Oncorhynchus tshawytscha (Chinook salmon): 112257246
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Entry
112257246 CDS
T05605
Name
(RefSeq) guanine nucleotide exchange factor subunit RIC1-like isoform X1
KO
K20476
RAB6A-GEF complex partner protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112257246
Membrane trafficking [BR:
otw04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Rab associated proteins
112257246
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIC1
ANAPC4_WD40
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
112257246
NCBI-ProteinID:
XP_042182476
LinkDB
All DBs
Position
LG09:complement(11825501..11923283)
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AA seq
1429 aa
AA seq
DB search
MYFLTGWPRRLLCPLKSEEEPFHVQPSSQRFYFAVLSETQLSVWFSRPSVLIVSYIESAK
ASSQFGFYQQAEWKQDDSMIAVAAANGYILLFDVVGGGEDKYLYEPVYSKGSRGVKVTPG
YKEEQCAPALSLEMKRPIDLEAPITSMQSLQEDLLVSTADGYLHILHWDGVSNGRKAISL
CSVPFSLDLQSARGGLCLDLKGVYIRDMTYCVTLDGFAVVLDDGRLGFITPLANRITADQ
LQGVWAADVTDGTCVAVNNKYRLVTFGCASGSVLVYSIDTTTGSMQLSHKLELTPKHYPD
VCNKTGAVKLIRWSPDYSVAMVTWECGGLSLWSVFGAHLICTLGEDFAYRSDGTKKDPIN
ISSMCWGAEGYHLWVITSREEAELVENMEEAPPQTQQAGILQFNFIKSALTVNPCTSNQE
QVLLHGEDRLYLTCGDPTQLSSGSSESPHPHKLPHGGEGSPTHHPSPNSTSQGLSTLLGY
KHWHVVQIHSTYLESNWPIRFAAIDTAGQCIAVAGRRGFAHYCMSTRKWKLFGNITQEQN
MTVTGGLVWWNGFVVVACYNFIDRQEELRLYLRSSNLDNTFSSVTKLHSDTLLLNVFRDM
IILFRADCSICLYSMERRHDGPNPSASVELLQEVSMSRYIPHPALVVSVTLTSVRTETGI
TLKAPQQACMADSIILNLAGQLIMLQRDRSGPQLQEKLPFCPPVVLAQYVENVWTTCRSN
RKKRHLLEALWLSCGEAGMKVWLPLFPRDHRKPHSFLSRRIMLPFHINIYPLAVLFEDAL
VLGASNETVVYDSLQGPREGRESLEGLFPYCTVERTSQIYLHHILRQLLVRNLGEQALLL
AQSCAALPYFPHVMELMVHVVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTIVHCARK
TEFALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLLFNTAL
EQGKWDLCRHMIRFLKAIGSGEMETPPPTPTTQEPSSTGGFEFFRNRSISLSPSADSIAA
GKFNLQKTFSMPSGPSAKGSERWSKDSDCAENMYIDMMLRRHARHLLEHVRLKELGCFSA
QLGFELIGWLCHERTRVARVDDFVMALKCLHKDFLWPFPVTPAGSISSPFKNGHRRTVLS
QHLLKSQSADSLLNSDMDTAPPQAAARNSNHTWLDGLGALGPTEPTEMDTALSHGGPQTQ
EAFLSPLTNKTEECSIGSATDLTETSSMVDGDWTMVDENFSALSLTHSELEHISMELANK
GPHKSQVQLRYLLHVFMEAGCLEWCVVIGLILREATVIKQVVNFLDSPEVPHETVQSVRS
GLLGVDAWASTDCLGYKPFLNMIRPQLQKLIETSVEQIQPEAFLPGASNSKLAEPQPGGP
SAEDSRGPALLGLALPLEPPGGLGTEDGGVPEEQEEQAVDEGVYDCTLS
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atgtattttctaactggctggcctcggaggctactttgtccactgaaaagtgaagaagaa
ccgtttcatgttcaacccagctcccagaggttttacttcgctgtattgtccgagactcaa
ctaagcgtctggtttagtcggcccagtgttctgatagtgagctacatagagtcggcgaaa
gcatcatcccagtttggcttctatcagcaggccgaatggaagcaggacgattccatgata
gcagtagcggctgccaatggctacatcctcctgtttgacgtggtgggaggaggagaggac
aagtatctttatgaacccgtctattccaaagggagtcgtggtgttaaggtcaccccaggt
tataaagaggagcagtgtgcccccgctctcagcctggagatgaagagacccatagacctg
gaggctcccattaccagcatgcagtctcttcaggaggatctattggtgtctactgctgat
ggctacctccacatcctccactgggatggagtcagcaacggcaggaaggccatcagtctc
tgtagtgtccctttctccctggacctacagtctgccagaggtggtctgtgtctggacctg
aagggggtgtacatcagagacatgacctactgtgtgacactggatggctttgctgtggtg
cttgatgatggcaggctggggttcatcactcctctagccaacaggatcactgcagatcag
ctgcagggcgtctgggcagcagatgtaacagacggcacgtgtgtggctgtcaacaataag
tacagactggtgacctttggctgtgccagtggctcagtgttggtgtacagtatcgatacc
actacagggtccatgcagctctcccacaagctggagctcactcctaaacactaccccgac
gtgtgtaacaagacaggcgcggtgaagctgatccgctggtcccccgactacagtgttgcc
atggtgacctgggagtgcggtggactgtctctgtggagtgtgttcggagcccacctcatc
tgtaccctgggggaggactttgcgtatcggtcagatggaactaaaaaggaccctataaat
atcagctcaatgtgctggggagcagagggctaccacctgtgggtcatcaccagcagagag
gaggcggagctagtagagaacatggaggaggctcctccccagacccagcaggctggcata
ctgcagttcaacttcatcaagagcgccctcacggtcaacccctgcacgagtaaccaggag
caggtgttacttcacggggaggaccgtctctacctaacctgtggtgaccccacccagctc
tcctccggcagctcagagagcccccacccccataaactcccccacggcggggagggcagc
cccacccaccacccctcgcccaattctacctctcagggactcagcactttactgggatac
aagcactggcacgtggtccagattcacagcacatacctagagagcaactggcctatacgg
tttgcagccatagacacagcaggccagtgtatagctgtagcagggagacgtggctttgca
cattactgcatgtccaccaggaaatggaagctgtttgggaacatcactcaggagcagaac
atgaccgtgacaggagggctggtctggtggaacggctttgttgttgttgcctgttacaat
ttcatcgaccggcaagaagagctgcgactgtacctgcggtcgtctaacctggataacacc
ttctcctccgtcaccaagctgcactctgacactctgctgctcaacgtgttcagagacatg
atcatcctcttcagagcagactgctccatctgcctctacagcatggagaggagacatgac
gggcccaatccatcagccagtgttgagctgcttcaggaggtgtccatgtctcgctacatt
cctcatcctgccctggtggtgtcagtcaccctcacctccgtacgcacagagaccggcatc
acgctcaaagccccacagcaggcctgtatggcagacagcatcatactgaacctggcaggc
cagctcatcatgctacagagagaccgttctggaccccagctacaggagaagctgccgttc
tgtcctccagtggttctggcccagtatgtagagaatgtgtggacgacgtgtcgtagtaac
aggaagaagcgccacctactggaggctctgtggctgtcgtgtggagaggctgggatgaag
gtgtggctccccctgttccctcgtgaccatcgtaagccccactccttcctgtcccgccgc
atcatgctgcccttccacatcaacatctaccccctggctgtgctgtttgaagatgctctg
gttctgggagcttccaacgagactgtggtctatgacagcctgcagggtcccagagagggc
cgggagtccctagaggggttgttcccctactgcacggtggagaggacttcccagatctac
ctccaccacatcctgaggcaactcctggtccgtaacctgggggagcaggcccttctcctg
gcccagtcctgcgcagcgctcccctacttcccccacgtcatggagctcatggtccacgtg
gtgctggaggaggaggccacctcccgggagcccatccctgacccgctgctacccaccgtg
gccaagttcatcaccgagttccccctgttcctccagacaatcgtgcactgcgccaggaag
acagagtttgccctgtggaactacctgtttgctgccgtgggaaaccccaaggatctgttt
gaggaatgtctgatggcccaggacctggacaccgctgcatcctatctcattatactacag
aacatggaggttccagcagtgagcaggcaacacgctacgctactcttcaacacggctctg
gagcagggcaagtgggacctctgtcgtcacatgatccgattcctcaaggccattggctct
ggagagatggagaccccacccccaacaccaaccactcaggaacccagttcgacgggaggt
tttgagttcttcaggaatcgcagcatcagtctgtctccgtcagctgacagcatcgctgct
gggaagtttaacctacagaagaccttcagcatgccctctgggccctctgctaaggggtct
gagaggtggtctaaggacagtgactgtgcagagaacatgtacatagacatgatgttgagg
cgtcacgcccgccacctccttgagcacgtcagactaaaagagctgggttgtttctctgcc
cagctgggtttcgagctgattggctggctgtgccacgagcgcacgcgggtggcgcgggtt
gatgattttgtcatggcgctgaagtgtctccacaaggacttcctgtggccatttcctgtc
accccagccggctccatcagctcgcctttcaagaacggacaccgcaggacagtgctgagc
cagcatctactgaagtcccagtcagcagacagcctgttgaacagtgacatggacacagcg
cccccacaggccgcagcacgcaacagcaaccacacttggctagacgggctgggagctctt
ggacctacagagcctacagagatggacactgccttgtcccacggggggccacagacacag
gaggccttcctctctccactaaccaacaaaacggaggagtgcagtatcggttctgccaca
gacctgacagagaccagcagtatggtggatggagactggaccatggtggatgagaacttc
tctgctctcagtctgacccactctgagctggaacacatctccatggagctggctaacaag
ggaccacacaagtctcaggtccagctacggtacctcctgcatgtgttcatggaggctggc
tgtctggagtggtgtgttgtgattggtctgatcctgagagaggccacagtcatcaagcag
gtggtcaacttcctggacagccccgaggttcctcatgagaccgtccagagtgtccgctcc
ggcctgctaggggtcgatgcatgggcctccacagactgcctgggctataagcccttcctg
aacatgatccggccccagctacagaagctcatagaaacttctgtagagcagatccagcct
gaagccttcctgccaggggcttccaactcgaagctggctgagccccagcccggaggcccc
agtgcggaagatagtagggggcctgctctcctgggtctggcccttcctttggagccccct
ggggggttagggacagaggacggcggagttccagaggagcaggaggaacaggcggtggac
gagggggtgtacgactgcactctgtcctga
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