KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112257247
Entry
112257247         CDS       T05605                                 
Name
(RefSeq) roquin-2 isoform X1
  KO
K15690  RING finger and CCCH-type zinc finger domain-containing protein
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:otw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:otw03000]
    112257247
   04121 Ubiquitin system [BR:otw04121]
    112257247
Transcription factors [BR:otw03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    112257247
Ubiquitin system [BR:otw04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    112257247
SSDB
Motif
Pfam: Roquin_1_2-like_ROQ ROQ_II zf-CCCH zf-RING_5 zf-RING_UBOX zf-RING_2 zf-CCCH_4 zf-C3HC4_3 zf_CCCH_4 Prok-RING_4 zf-CCCH_UNK zf-C3HC4
Other DBs
NCBI-GeneID: 112257247
NCBI-ProteinID: XP_042182494
LinkDB
Position
LG09:complement(13421100..13463193)
AA seq 1255 aa
MPVQAAQWTEFLSCPICYNEFDSSGHKPISLGCSHTVCKTCLLKLHRKACPFDQTAINTD
IDLLPVNSALLQLVGAQAVESQAVTLSSAVEVGHYEVCRVCVEELALYLKPISGEKGVVT
LSPSVLSRPMQRKLVTLVNCQLVEEEGRLRAVRAGRSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPATQEDALKLVLLALEDGSALSRKVLVLFVVQKLEARFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRAYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLIHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNSLRPHLELLANI
DHNPDAAAAPWWEELESVMLAVKVVVHGLVEFIHNFSRKSHETAQPQPNSKYKTSICRDL
RQQGGCPRGSNCTFAHTQDELEKNRMRNKKISGVGRPFLLAQGSMGSGLSMEGGDSGEEA
CTGGLKSSDSGGSGSLKEEASPSQLMPRGEDMMEEMKRERSVLNGSTGSSRSSSGSMEQK
SISPPKTPVNSSSAPSTYGPGSRPECDSAHPKQAQYLMIRPLPQPPPHQPQSSELCYQDP
QPPYDVQPYQPASNSYPSAIHHHKPCVARFLRSSHVPESSLPPSMAPLYSEQYTSLPPPR
EHAGPSPYGPSSVPQYGPLAPAHGGYAPLYDSRHMWRPQLYHREDARSNSLPPEVLHSSV
YQPPLRERYASLDSPYGSAGEHRAALHRNSYGRFPLGCEDLFRRKQEQWAHHHHGNVNRP
SQSSPVFTVDFGAEHDDGGGGQCMNCKFRGEENLSHYSPWSCGTISTCISPFEPEHHKAS
AHSRSENLEVDNGERTRWLHTFETYRRLKDEDPSIPFEPYRRLKDEDPSIPFETYRRLKD
EDPSIPFEPYHRLKDEDPSIPFEPYRRLKDEDPSIPFEPYRRLKDEDPSIPFEPYRRLKD
EDPSIPFEPYRRLKDEDPSIPFEPYRRLKDEDPSIQFETYRRLKDEDPSIPFETYRRLKD
EDPSIPFGEGPIIPFGEGPIISKWGVISRASRTGYHTTDPVQATACQGSNSTIPINFRDY
GPHIGHGDYRWSSGGSDSSSHSSFIEGEQLASLRRSFSSGEKVGAGDMLQTDYCKDTTDH
QLDRDVELELSVLDVEDTVLQDNSQQSEKPLELREPHLLTPPSSEPMRTQTDKLSADKME
AQLLKKMAFRRSLSPGGLGSGGLSVGKLMMRTGPLRLGDMGPCPNTGPEMLLNGN
NT seq 3768 nt   +upstreamnt  +downstreamnt
atgccagtgcaggcggcccagtggacagagttcctctcctgccccatctgctacaacgag
ttcgacagcagcggccacaagcccatcagtctgggctgctcgcacactgtgtgtaagacc
tgtctcctcaagctgcaccgcaaggcctgtccgttcgaccagacagccatcaacactgac
atcgacctcctgccagtcaacagtgccctgctacagctggtgggagctcaggctgtggag
tcccaggctgtgactctgagcagtgctgtggaggtagggcactatgaggtgtgcagggtg
tgtgtggaggagctggctctctatctcaaacccatcagtggagaaaaaggtgtggtgacc
ctcagtccgagcgtgctcagtcggcccatgcagaggaagctggtgacactcgtcaactgt
cagctggtggaggaggaggggcggttgcgggcggtgcgggcgggcaggtcgctaggggaa
cgtaccgtcacagagctcatcctgcagcaccagaacccacagcagctctctgctaacctg
tgggccgccgtcagagcacggggatgccagttcctggggcctgccacgcaggaggatgct
ctgaagctggtactgttggcgctagaggacggctcagctctgtccaggaaagttcttgtc
ctttttgtggtccagaagctggaggctcggttccctcaggcctccaaaacctccatagga
catgtggtccagctactctacagggcctcctgctttaaggtgaccaagcgtgacgaggac
tcgtcgttgatgcagctaaaggaagagttccgtgcgtacgaggcgctgcgtcgcgagcat
gacgcccagatcgtacacatcgccatggaggcggggctccgtatctcccctgaacagtgg
tcctctctgctctatggagacctcatccacaagtcacacatgcagtctatcatcgacaag
ctccagtccccagagtcctttgcaaagagtgtccaggagctgacgatagttctacagaga
acaggagacccagccaatctgaacagcctcagaccacacctggaactactggccaacatc
gaccacaacccagatgcagcggcggctccgtggtgggaggagctggagagtgtgatgctg
gcggtgaaggttgtcgttcatggtctggttgagtttatacacaacttcagtaggaagagc
catgagacagcacagccgcagcccaacagcaaatataagaccagtatctgtcgagacctc
cggcagcagggtggctgtccccgaggatccaactgcaccttcgcacacacacaggacgag
ctagagaagaacagaatgagaaacaagaagatcagtggcgtgggccggcccttcctcctg
gcccaggggagtatgggtagtggtctgagtatggaggggggcgactcaggagaggaggcc
tgcactgggggcctgaagagctcagacagtggggggtcagggtccctaaaggaggaggcc
tcaccctcccagctcatgcccaggggagaggatatgatggaggagatgaagagggagagg
tctgtacttaacggatccacaggctccagccgatcctcatctggctctatggaacagaag
tctatttctcctccaaagacaccagtcaattcctcctcagctccttctacctatggccca
gggtctagaccagagtgtgactctgcacaccccaaacaggcccagtacctaatgataaga
ccccttcctcagccccctccccaccaaccccagtcctctgaactgtgttaccaggacccc
caacctccctacgacgtgcagccctaccagccagccagtaactcctacccctctgcgata
caccaccacaaaccctgcgtggctcgcttcctccgttccagccacgtcccagagtcctct
ctgcctccctccatggcccctctgtactcagagcagtacacctccttgcccccaccacgg
gagcacgctggtccctctccctacggtccctcatcggtcccccagtacgggcccctggcc
ccagcccacggtggctacgctcccctgtatgacagccggcatatgtggaggccccagctg
taccaccgagaggacgccaggagtaactcgctgcctcccgaggtgctgcactcctctgtg
taccagcccccccttcgagagagatacgcctccctggacagcccctacggctcagcgggg
gagcacagagcagcactgcacaggaactcttatgggcgttttcctcttggatgcgaggat
ctgttcaggcggaaacaggagcagtgggcacaccatcaccacggcaacgtgaacaggccc
tcccagtcctcccccgtcttcaccgtagactttggtgcagagcatgatgacggtggtggt
ggtcagtgtatgaactgtaagttccgtggagaggagaatctgtcccactactctccctgg
tcctgtggaaccatcagtacctgcatcagcccctttgaaccagagcatcacaaggcctca
gctcactcccgctccgaaaacttagaagtagacaatggtgaaaggacgcggtggttacac
acgtttgaaacctaccgccgtctgaaagacgaggaccccagcataccgtttgagccctac
cgccgtctgaaagacgaggaccccagcataccgtttgaaacctaccgccgtctgaaagac
gaggaccccagcataccgtttgagccctaccaccgtctgaaagacgaggaccccagcata
ccgtttgagccctaccgccgtctgaaagacgaggaccccagcataccgtttgagccctac
cgccgtctgaaagacgaggaccccagcataccatttgagccctaccgccgtctgaaagac
gaggaccccagcataccgtttgagccctaccgccgtctgaaagacgaggaccccagcata
ccgtttgagccctaccgccgtctgaaagacgaggaccccagcatacagtttgaaacctac
cgccgtctgaaagacgaggaccccagcataccttttgaaacctaccgccgtctgaaagac
gaggaccccagcataccgtttggagaggggcccatcataccgtttggagaagggcctatc
atctccaaatggggggtgatatcccgcgcctcccgtacaggataccacaccaccgacccg
gtccaggccacagcctgccagggaagcaacagcaccatccccatcaacttcagagattat
ggtccacacatcggccatggggactacaggtggagctccggggggtctgactcttccagc
cactccagtttcatagagggtgaacagctagcctcccttcggcggtccttcagcagtgga
gagaaggttggtgcaggagacatgctgcagactgactactgtaaagacacgacagatcat
caactggacagagacgtagaactggagctgtctgtactagacgtagaggacactgtcctg
caggacaacagtcaacagtctgagaagcccctggagctgagagagccccacctcctcacc
cctcccagcagtgaacccatgaggacacagacagacaagctgtcagcagacaagatggaa
gctcaactgctgaagaagatggccttcaggaggtctctctcccctggaggtctgggctca
ggaggcctcagcgtggggaagctgatgatgaggaccggccctctgagactgggggacatg
ggcccttgccctaacacaggccctgagatgctgctcaacgggaactga

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