Oncorhynchus tshawytscha (Chinook salmon): 112257260
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Entry
112257260 CDS
T05605
Symbol
clip1b
Name
(RefSeq) CAP-Gly domain-containing linker protein 1 isoform X1
KO
K10421
CAP-Gly domain-containing linker protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
112257260 (clip1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112257260 (clip1b)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
otw04812
]
112257260 (clip1b)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
112257260 (clip1b)
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
112257260 (clip1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAP_GLY
CLIP1_ZNF
Prefoldin_2
SlyX
Motif
Other DBs
NCBI-GeneID:
112257260
NCBI-ProteinID:
XP_042182569
LinkDB
All DBs
Position
LG09:17426570..17470293
Genome browser
AA seq
883 aa
AA seq
DB search
MSTGKPSGIKPPSKISRPTGLPTRTSPSSAASKPVPPEKSPTQDGAVDYRVGEKVWVNGN
KPGYVHFLGDTQFAPGQWVGIVLDEAIGKNDGSVAGVQYFQCEDGRGIFTRPSKLTKTAM
PEREANGGQPNPGETGAKSPSSATAGAATTTGNSTKTPLSRTVTGNGSMSNLSETDSARK
TRRELRLGDRVLVGGTKAGVVRFMGETEFAKAEWCGVELDEPLGKNDGAVAGTRYFQCLP
RYGLFAPVHKVTRIGFPSTLAKAKASSRRRSTMKRSPSASSMSSLSSVTSSVSGKPSQAG
LLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDMERGEVAKATSHAGEVQQELCL
LRKVQEQNAMEMEDKLDQLRKLVETADRDKVELLSQLEEEKRKVEDLQFTVEEACITKGD
LETQTKLEHAHIKELEQSLLFEKTKADKLQRDLEDTRVATVSEQSRIMELEREVAALQLR
LRSSQQTGGAVSLSPEALSNLKAQAQSQEKKISELNVNLDSRQKQLCSVEEDKSSLEQQL
TSLRQKLDVAEEKNKRTTRTMQELEKRGEQTEKEREAQREENQGKEKELQDRLTQAAESS
ERIAHSLEQLIIEKTALEAQLEALKQQNSKFQEELSLSQVRGSSESQRIGTLCKEIEVLK
LASLTSQNQPDMKDRETLSNQETDEDKELETLRDEIAVLRGENAMAKTLQSAVETLERDK
AQLQERVTSLEQRLLGRQASEGGDSGVPSSGDTALDQLREEKEFAEGQINFLNSVIVDLQ
RKNEELKVKLKKMALAEFNGNDGTDGLEEGGSKKDKKAPPRLFCDICDCFDLHDTEDCPT
QAQSPDSVPHSSFKGKPADQRPYCDICEAFGHSIESCQEDQTF
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atgagcacaggcaagcccagcggaatcaagccccccagtaagataagcaggccaactggg
ttaccaacacgcacctccccttcctctgctgcttccaagcctgtaccccctgagaagtct
cccacccaggatggagcagtggactaccgggtgggggagaaggtgtgggtcaacggcaac
aagccaggatatgtccacttcctgggggatacacagtttgccccgggccagtgggtcggc
atcgtcctggatgaggcaatcgggaagaacgacgggtcggtggcaggtgtccagtatttc
cagtgtgaggacggcagagggatattcacacggccctccaagctgaccaagacagctatg
ccggagagggaggccaatggtgggcagcctaaccctggcgagacaggggccaagtcccct
agctctgctactgctggggctgctactaccactggtaacagcaccaagacaccgctgagt
agaaccgtgaccggcaatgggtcaatgtccaacctctctgagaccgactcagccaggaag
accagaagagaactaagactgggagaccgcgtgctggtggggggtactaaggcaggggtg
gtgaggttcatgggagagacagagtttgccaaggcggagtggtgtggagtggagctggac
gaacctcttgggaagaatgatggcgctgtggctggaaccaggtatttccagtgcctgccg
cgatacggtctgtttgctccagtccataaggtgactcgtatcggcttccccagcaccctg
gctaaagccaaggcttcctctcggagacgctccaccatgaagaggagtcccagtgcctcc
tccatgagctccctgagctctgtcacctcctctgttagtgggaaacccagccaggctggc
ctgttgacagagacctcgtcacggtatgctcgtaagatctctggcaccacagcgctacag
gaagcgctgaaggagaagcagcagcacatcgagcagctattggccgagagggacatggaa
cgcggggaggtcgccaaagcaaccagccatgctggagaggtgcagcaggaactgtgtctg
ctcaggaaggttcaggagcagaatgctatggagatggaagataagctggaccagctgcgt
aaactggtggagacagcagacagagacaaggtggagctgctcagccaactggaggaggag
aagaggaaagtggaagacctgcagttcactgtggaagaggcttgcatcactaaaggtgac
ctagagacgcagaccaaactggagcatgcccatattaaggagcttgagcagagccttctg
tttgaaaagaccaaagctgacaaactgcagagggatttagaggacactagggtggcaaca
gtgtctgagcagtccaggatcatggagctggagagagaagtagcggcgctgcagttgaga
ctacgctcctcccagcagacagggggcgctgtgtcgctgtcaccagaggcgctcagcaac
cttaaggcacaggcccagtcccaggagaagaagatcagtgaactgaatgtgaatctggac
agcaggcagaaacagctatgctctgtagaagaggacaagagctccctggaacagcagcta
accagcctgagacagaaactggacgtagcagaggaaaaaaacaagaggacgacacgaacc
atgcaagagctggagaagagaggagagcagacggaaaaagagagggaggcacagagagaa
gagaaccaaggcaaagagaaagagcttcaggatagactgacgcaggctgctgagtcatca
gagaggatcgcccactcactggagcagctgatcattgagaagacagcgctagaggctcag
ctcgaggcactgaaacagcagaattccaaattccaggaagaactcagtctctcgcaggtg
cgaggcagctcagaaagccagcgcatcggaactctgtgcaaggaaattgaggtactgaag
ctggccagtctgacatctcagaaccagccagacatgaaagacagggaaactctgtccaac
caggagacagatgaggacaaggagctggagactctgagggatgagatcgcggtgctgcga
ggtgagaacgccatggccaagacgctgcagtctgccgtggagacgctggagagagacaag
gcccagctacaggaacgcgtcaccagcctggagcagaggctattgggacggcaggcctcc
gagggaggggacagtggagtgccttcctcaggtgacacagctctggaccagttgagagaa
gagaaggagtttgcagagggacagattaacttcctgaacagtgtgatcgtggacctacag
aggaagaatgaggagttgaaggtcaagctgaagaagatggctctggcggagttcaatggc
aatgacggcactgatggtttggaggagggtggatctaagaaggacaagaaggctcctcct
cgtctgttctgtgatatctgtgactgttttgacctgcatgacactgaggactgtccaacc
caggcccagagccccgactcagtcccccactcttccttcaagggcaaacctgccgaccag
cggccgtattgcgacatctgtgaggccttcggtcactccatagagtcctgccaggaagac
cagaccttctag
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