Oncorhynchus tshawytscha (Chinook salmon): 112257388
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Entry
112257388 CDS
T05605
Name
(RefSeq) rab GTPase-activating protein 1 isoform X1
KO
K20284
Rab GTPase-activating protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112257388
Membrane trafficking [BR:
otw04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
112257388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RabGAP-TBC
DUF3694
PID
ERM_helical
PTB
UPF0242
Ig_mannosidase
Motif
Other DBs
NCBI-GeneID:
112257388
NCBI-ProteinID:
XP_042182492
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All DBs
Position
LG09:complement(13231893..13413984)
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AA seq
1099 aa
AA seq
DB search
MDDKALVGKISVSSDSVSTLNSEDFVLVSRLGDDTPGSSINNGSDDEKTGLKVISEEGVS
FKIVGNGSEQQLQKELEDVLMDPSVADQILSGGGGGWGDQVGGGDHVSQPTTAVPPQSVP
QPCPDPLSDPLNTLPKVEMVLPVQSAQGAQESELNERSYRGDESSSECSPSTPIPDEDSV
VFNKLTYLGCASVNAPRSEVEALCMMTVLRGQCQLPLDVTLSVPGVSEGTVRLLDPQTST
EIASYPIYKIMFCVRGHDGTPETDCFAFTESHYNAEIFRIHVFRCEIQEAVSRILYSFAT
AFRRSAKKTVLSGLAPPLTPDSDVFTFTVSLEIKEDDGKGTFSAVAKDKDKNSFKLRPGM
DKKVFIYVQQTSNKELSIERCFGLLLSPGKNVKNSDMHLLDLESMGKSSDGKSYIITGSW
NPNTPQFQAVNEETAKDTFIYMTTAVDLVITEVEEPVRFLLETRVRVCSPNERLFWPFSK
RSYTETFYLKLRQMERKRNKDTLYEVLSLESELKRERKKTTASPNILQSASQGSMVPSPP
EDDEEEDNDEPLLSGSGDVSKECAEKILETWGDLLSKWHLNLSVRPKQLPALVRSGVPEA
LRGEVWQLLAGCHNNDHQVEEYRTLITKESPQDSAITRDINRTFPAHDYFKDTGGDGQDS
LYKICKAYSVYDEEIGYCQGQSFLAAVLLLHMPEEQAFSVLVKIMFDYGLRDLFKQNFED
LHCKFFQLERLMQEYIPDLYNHFLNVGLEAHMYASQWFLTLFTAKFPLYMVFHIIDLLLC
EGISVIFNVALALLKTSREDLLATDFEGALKFFRVPVPKRYRSEENAKKLMELACSMKIS
QKKLKKYEKEYDSMREQQEQQEAPIERYERENRRLQEANMRLEQENDDLAHELVSSKIAL
RKDLDNAEEKADALNKELLMTKQKLVDSEDEKRRLEEESAQLKEMCRRELGKSESEIKKN
GSIIGEYKQICSQLSERLEKQQIANKGEVEKIRLKVEGCEKCSILFNKEGRLKAVRKMKE
GSEEETDEEKEGLKNQLREMELELAQTKLQLVEAECKIQDLEHTLGLALNEVQAAKKTWF
NRTLTSIKTVTGAQGKETT
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atggatgacaaggccttggtggggaaaattagcgtgtcgtccgactccgtgtccaccctg
aacagtgaggactttgtgctggtgtcgcggctgggggacgacaccccaggctcctccatt
aataacggtagtgatgacgaaaagacaggactgaaggtgatttctgaggaaggggtcagc
tttaagattgtgggaaacggcagtgagcagcagttgcagaaggagctggaggatgttctg
atggacccctctgtagctgaccagattctgagcggtggcggtggtggctggggagaccag
gtgggagggggggaccatgtgtcccagcccaccacagcagtaccaccccagtccgtgccc
caaccgtgccctgaccccctcagcgaccccctcaataccctgccaaaagttgagatggtt
ctgcccgtccaatccgcacaaggtgcacaggagagcgagctaaatgaacgatcgtaccgc
ggggatgagtcatcatcggagtgcagccccagtacacccatcccagacgaggacagtgtg
gtcttcaataagctgacctacctgggctgtgcctcggtcaacgctccccgcagtgaggtg
gaagctctctgcatgatgaccgtcctcagagggcagtgccaactacccctggacgtcacc
ctatctgtgcccggtgtctcagagggcaccgtcaggttgctggacccccagacaagcaca
gagatagccagttaccccatctacaagatcatgttctgtgtgcgtggtcatgacggtacg
cctgagactgactgctttgccttcacagagagccactacaacgcagagatcttccgtata
catgtcttccgctgtgagatccaagaggcggtcagcaggatactgtacagctttgccacg
gcctttaggcggtccgccaagaagacggtcctctcgggcttggctccacccctgacgcca
gacagcgacgtcttcaccttcaccgtcagtctagagatcaaggaggatgatgggaaaggg
acctttagcgctgtggcgaaagacaaagacaagaacagctttaagctgcgtcctggaatg
gacaagaaggtcttcatctacgtacagcagacgtccaataaggagctgtctatagagagg
tgcttcggcctactgctgagcccagggaagaacgtgaagaacagtgacatgcacctgcta
gacctggagtcgatggggaagtcctctgatgggaagtcctacatcatcacagggagctgg
aatcccaacacgcctcagttccaggctgtcaacgaggagacagccaaagatacgttcatc
tacatgacgacggcggtggacctggtgatcactgaggtggaggagccggttcgtttcctg
ctggagaccagggtcagagtctgctcccccaacgagaggctcttctggccattcagcaaa
cgcagctacacagagactttctacctgaaactcagacagatggaacgtaagaggaacaag
gacaccctgtacgaggtgctgagcctggagagcgagttaaagagggagaggaagaagacg
acagccagccccaacatcctgcagtctgcctcccaaggatccatggtgccatcgccccct
gaggatgatgaggaggaagacaatgacgagccgttgctgagtggctcaggagacgtgtca
aaagagtgtgctgagaagatcctggagacctggggagacctgctgtccaaatggcatctg
aacctgtctgtgcgtcccaagcagctcccggctttggtgcgtagcggggtcccagaggcc
ctcagaggagaggtatggcagctcctggctggttgccataacaacgaccaccaagtggag
gagtaccgcaccctcatcactaaggagtctccccaggacagtgccatcaccagagacatt
aacaggactttcccagctcacgactacttcaaggacactggaggagacgggcaagactca
ctctacaagatctgcaaggcctactcagtgtatgatgaggagattggttactgccaggga
cagtctttcctggccgctgtgctgctgctgcacatgcctgaggaacaggccttcagtgtt
ctggtcaagatcatgtttgactacggactcagggacctcttcaagcagaactttgaggat
ctacactgcaagttcttccagctggagagactcatgcaggaatacatcccagacttgtat
aaccacttcctgaacgtgggtctggaggctcatatgtacgcctctcagtggttcctcacg
ctcttcacagccaagttccccctctacatggtgttccacatcatagacctgctactctgt
gagggcatcagtgtgatcttcaacgtggctctggctctcctgaagacctcaagggaagac
ctgcttgcaacagactttgagggggcgctcaagttcttccgggtcccggttcccaaacgc
taccgctcagaggagaacgctaagaaactgatggagctggcctgcagcatgaagatcagc
cagaagaagctgaagaagtatgagaaggaatatgacagcatgagagaacagcaggagcag
caggaggctcccattgagagatatgagagggagaaccgtcgtctccaggaggctaacatg
cgtctggagcaggagaatgatgacctggcccatgaactggtcagcagcaaaatcgctctg
cgcaaagacctggacaacgctgaggagaaagcagacgctctgaacaaggagctgttgatg
accaaacagaagctggtggattcagaggacgagaagagacgactagaggaggagtctgca
cagctgaaagagatgtgcagacgggagctgggtaaatcagagtctgagataaagaagaat
ggttccatcataggagagtacaaacagatctgctctcagctcagtgagcgtctggagaaa
cagcagatcgccaacaagggagaggtggagaagatccggctgaaggtggagggctgtgag
aagtgctctatcctcttcaacaaggagggtcgtctaaaggcagtgaggaagatgaaggag
ggcagcgaggaagagacggacgaggagaaggagggtctgaagaaccagctcagagagatg
gagctggaactggcccagaccaaactacaactggtggaggcagagtgcaagatacaggac
ttggagcacaccctgggtctggccctgaacgaggtccaggcagccaagaagacctggttc
aacagaaccttaacctccatcaagaccgtgaccggagcacaggggaaggagacgacctaa
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