Oncorhynchus tshawytscha (Chinook salmon): 112257427
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Entry
112257427 CDS
T05605
Name
(RefSeq) thrombospondin-4-B
KO
K04659
thrombospondin 2/3/4/5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04145
Phagosome
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112257427
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
112257427
09144 Cellular community - eukaryotes
04510 Focal adhesion
112257427
09142 Cell motility
04820 Cytoskeleton in muscle cells
112257427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112257427
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112257427
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112257427
Membrane trafficking [BR:
otw04131
]
Endocytosis
Phagocytosis
Opsonins
112257427
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112257427
Exosomal proteins of colorectal cancer cells
112257427
Exosomal proteins of bladder cancer cells
112257427
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112257427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
EGF_3
cEGF
EGF
EGF_MSP1_1
Motif
Other DBs
NCBI-GeneID:
112257427
NCBI-ProteinID:
XP_024286735
LinkDB
All DBs
Position
LG09:complement(15686956..15703702)
Genome browser
AA seq
939 aa
AA seq
DB search
MGLWTTLIVASQLILNLCSEVGAQGSVYDLLNSPDCLPDLLQGGLVEQGVNEAFILTTFK
LQPKTGTTVFGLYNPRDNSKYFEFTVLGKLNRAVLRYLRSDRRMSSVTFNNIPLADGQRH
RLLFHLKGMQQGPGGVELHLDCRLVETVRDLPSVFQGLPAGYGVVELKSMQGKAEEELEE
LKLVVGDTFENVASLQNCHQQGDSVQTLGVNTKQLSNQMLDLTKVINELKDVLIQQVKET
SFLRNTISECQACGLGGSEVMKQKCAPGVCFRGDMCIETEEGVECGPCPDGYTGDGFSCD
DVDECQFNPCFPGVKCVNTAPGFRCDACPLGYSGLAVEGVGVVYAQTNKQVCDDIDECKE
PNNGQCTANSLCHNSAGSYVCGGCKTGYTGDQAKGCKPERSCGNSLTNPCDVNAQCIQER
DGSITCQCGIGWAGNGYLCGKDTDIDGYPDEKLKCKDMLCKKDNCMRVPNSGQEDADKDG
QGDACDTDADGDGILNEQDNCWLKPNVDQRNSDKDSHGDACDNCRTVENPDQRDTDSDGK
GDACDDDMDGDGLKNFLDNCQQVVNRDQLDRDGDGVGDACDSCPDIPNPNQSDIDHDLVG
DSCDTNQDSDGDGHQDTKDNCPNVINSSQLDTDKDGLGDECDDDDDNDSIPDFLLPGPDN
CRLVPNPDQLDENSDGVGDVCESDFDQDKVIDRIDNCPENAEVTLTDFRAYQTVVLDPEG
DAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFSGVDFEGTFHVNTVTDDDYAGFIFGY
QDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSKSGPGEHLRNSLWHTGDTNDQ
VRLLWKDPRNVGWKDKVSYRWYLQHRPQVGYIRARFYEGTELVADSGVTIDTTMRGGRLG
VFCFSQENIIWSNLKYRCNDTIPGDFQEFSMQHGVVDGL
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggggttgtggacgacactgatcgtggcttcgcaactgatcttgaacctgtgttcggaa
gtgggagcccagggctcagtgtatgatctcctcaattccccggactgtctgccagacctg
ctgcagggtggcttagtggagcagggcgtgaatgaggctttcatcctcaccaccttcaag
ctgcagcccaagactggcaccacagtgttcggcctgtacaacccacgggacaacagcaag
tactttgagttcactgtgctggggaaactcaacagagccgtgctgcgttacttgaggagt
gatcggaggatgagctccgtgaccttcaacaacatcccgctggcagacggtcagcgccac
cgcctccttttccacctgaagggcatgcagcagggacctgggggggtggagctacacctg
gactgcaggctggtggagacggtccgggatctcccctccgtgtttcagggtctgcctgca
ggctacggtgtggtggagctgaagagcatgcagggcaaagcagaggaagagctggaggag
ctgaaactagtggtgggagacacgtttgagaacgtagcttctcttcaaaactgccaccaa
caaggagactcagtgcagactctgggggtcaacacaaagcagctgtccaatcaaatgctt
gatctcacaaaggtgataaatgagctgaaagatgtcctcattcagcaggtcaaagagaca
tcttttctcagaaacaccatctctgagtgccaggcttgtggactgggtggaagcgaagtc
atgaagcagaagtgtgcccctggagtttgtttccgcggtgacatgtgtattgagacagag
gaaggggttgagtgtggaccctgccctgacggatacacaggggacggcttcagctgtgac
gatgtggatgagtgtcaatttaacccatgcttccccggggtgaaatgtgtgaacacggct
ccagggttccgctgtgacgcctgtcctctgggctactctggtctggctgtggaaggggtg
ggagtggtctacgcacagacaaacaaacaggtctgtgatgacattgacgagtgcaaagaa
cccaacaatggacagtgcaccgccaactctctctgtcacaactctgcgggttcatatgtc
tgtgggggctgtaagacaggctacacaggagaccaggcgaagggctgtaagccagagagg
agctgtggtaacagtttgaccaacccctgtgatgtcaacgcccagtgtatccaagaaaga
gacggctccatcacctgtcagtgtgggattggctgggctggtaatggctacctatgtgga
aaggatacagacattgatggataccctgatgagaaacttaagtgcaaggatatgctctgt
aaaaaggataactgcatgcgcgttcctaactctggccaagaggatgctgacaaggacgga
caaggagacgcttgtgacaccgacgctgatggtgacggtattctgaatgaacaggataac
tgctggctgaagcctaacgtggaccagaggaacagtgacaaggacagccatggtgacgcc
tgtgacaactgtcgcacggtggagaaccctgatcagagggacactgacagtgatgggaaa
ggagacgcctgcgatgatgacatggatggagacggcttgaagaacttccttgacaactgc
cagcaggtggtgaaccgggaccagttggaccgggatggagatggagtgggagatgcctgt
gacagctgccctgatatccctaatcctaaccagtccgacattgaccatgacctggttggg
gattcttgtgacacaaatcaagacagtgatggcgatggtcaccaggacaccaaggacaac
tgtcccaatgtgatcaacagctcccagctggacacagacaaagacggcctgggggatgag
tgtgacgatgacgacgacaacgacagtatccctgacttcctgctaccaggacccgacaac
tgcagactggtgcccaaccccgaccagctggatgagaacagtgatggtgttggagatgtg
tgtgagtcagactttgaccaggacaaggtgatagacaggatagacaactgtccagagaac
gctgaggtcactctgacagacttcagagcctatcagacggtggtgctggacccggagggc
gatgcccagattgaccccaactgggtggtacttaatcagggaatggagattgttcagacc
atgaacagtgaccctggacttgctgtgggttacactgcgttcagtggagtggactttgag
gggacattccatgttaacacggtgaccgacgatgactacgcaggcttcatctttggctac
caggactcctcctccttctacgtggtcatgtggaaacagactgaacaaacctactggcag
gcaacaccctttagagcagtggccgagcctggcatccagctcaaggctgtgaagtctaag
tcaggtccaggggagcacctgaggaactccctgtggcacacaggggacaccaacgaccag
gtgcgtctgctgtggaaggaccccaggaacgtgggctggaaggacaaggtttcctaccgt
tggtacctgcagcaccgaccccaggttggatacatcagggcccgtttctatgaggggaca
gagctggtggctgactctggtgtgaccatcgacaccaccatgagaggaggccgactgggc
gtgttctgtttctctcaggaaaacatcatctggtccaacctaaagtaccgttgcaatgat
accatccctggggacttccaggagttcagcatgcagcatggcgttgtcgacggtctctaa
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