Oncorhynchus tshawytscha (Chinook salmon): 112257472
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Entry
112257472 CDS
T05605
Name
(RefSeq) protein strawberry notch homolog 1-like isoform X1
KO
K26273
protein strawberry notch
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112257472
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
112257472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
SBNO
ResIII
Helicase_C
OspG_kinase
Motif
Other DBs
NCBI-GeneID:
112257472
NCBI-ProteinID:
XP_042182562
LinkDB
All DBs
Position
LG09:complement(17338041..17370171)
Genome browser
AA seq
1427 aa
AA seq
DB search
MVEDFPRITVKMMDPGQDLLLAALSESGICPNDLFDFDPQDAAMPSPTQQSISISALGLD
SGMEPTGVTAPPNPTGTIRHKPQPSTTTFVLNQLNQLPSLGTIVVTKPSTGGTARHTITV
TKVVHTTPSALRGSTSTLTSSTALPSAVSTVVSSSLEQIQLKDLLRTGSLKGSTMKGSSL
VELMRLKPPHDIAQPVATAIATGAKIILVSTKMMHKSAELNNGIKEVSGKDSARVWVNDD
VKVRSFSPTLKLPGMEEEAEEEEDEELGHAETYAEYMPMKLRIGLRHPDPVVETSSLSSV
NPPNVWYRMSIPEETIDRGWLSALQLEAITYAAQQHETFLPNGDRASYLIGDGAGVGKGR
TIAGIIYENYLLGRKRSLWFSVSNDLKYDAERDLKDIGAKNIPVYSLNKFKYGKISSKHN
GSVKKGVIFATYSSLIGESQSGGKYKTRFKQLLHWCGQVFDGVIVYDECHKAKNVCPIGS
SKPTKTGLAVLELQNKLPKARVVYASATGASEPRNMAYMSRLGIWGEGTPFREFSNFIQA
VERRGVGAMEIVAMDMKLRGMYIARQLSFTGVTFKIEQVPLTTHYIKMYNKSVHLWVAAR
EKFQAAANLMDAEQRMKKSMWGQFWSAHQRFFKYLCIASKVRRVVQLAREEVKNGKCVVI
GLQSTGEARTLEALEEGGGELNDFVSTAKGVLQSLVEKHFPAPDREKLFSLLGIDLPAMK
IPFPSEAAAEQKGKKRKGANIKKAEKRKRKSGGLSGNSSDDSKSEESHKDDAESDDSFKS
VSSGEDDEDDFNPFKDDSSEDEEDDPWLSGKRKGVKKCKEKKKKKSIDPDSIHSALLASG
LGSIRPAFTTPPVKTSSTPAIAKVEVDDSCMTSQDAVEDAQQMKRDLLDQLDKLAQDLPP
NTLDELIDELGGPDNVAEMTGRKGRVVSNDDGSISYESRSELDVPVEILNLTEKQRFMDG
EKNIAIISEAASSGISLQADRRVKNQRRRVHMTLELPWSADRAIQQFGRTHRSNQVTAPE
YVFLISELAGEQRFASIVAKRLESLGALTHGDRRATETRDLSRFNFDNKYGRNALEIVMK
SIVNLDFPLVNPPSNFEGDFYKEILHGLIGVGLIHVEDRSGILSLDKDYNNIGKFLNRIL
GMAVQEQNALFQYFSDTLAAVIQNAKKNGRYDMGILDLGSGDEKVKKMEAKKFLTPGYST
SGHVELYTVSVERGMSWEDATHAWAEQSGPDDGFYVQIRNNKKTAILVKEVNSKKRLFLV
YRPNTGKQLKLEAYADIKKKCKKVLSDDAKQHWMDQYQSSAEICSHAYWRGNCKKVSVGL
QCEVGLRCRTYYVLCGSVLSVWTKVEGVLASVSGTNIKMQIVRLRTEDGQRIVGLIIPIN
CVSPLTNILSSSDQSQQLAVQQQQKWQQLHPQSLSHMHNMGSPPSLT
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atggttgaggatttcccgaggatcacagtaaaaatgatggatcctggacaggatttgctc
ctagcagccctgagcgagagcggcatctgccctaacgacctgtttgactttgaccctcag
gatgctgcaatgccctctcccacccaacagtccatctccatcagtgccctgggtcttgac
tcagggatggagccaacgggagtcacagctccacccaatcctacaggcacaatcaggcac
aaacctcaaccctcaaccaccacatttgtcttaaatcaactgaatcagttgccatcgctg
ggaacaatcgttgtgactaagccctcaactggaggcacggccagacataccatcacagtc
accaaggtagtccataccaccccctcagccctgcgggggtccacttccacactcacctcc
tccacggctctcccctccgcagtctccacagtggtttcttccagtctagagcagatccag
ctgaaggacctgttgaggacaggcagtctgaagggcagcaccatgaagggtagtagtctg
gtggaactcatgaggctcaagccgcctcacgacatcgcccagccggtcgccacagcaata
gccacaggcgccaagataatactggtctcgacaaagatgatgcataaatcagcggaactg
aacaacgggataaaagaggtgtcgggtaaagactccgctcgggtctgggtgaacgacgac
gtgaaagtgcggagcttctcacctacactaaaactcccaggaatggaggaggaggctgag
gaagaggaggatgaagagttgggtcatgctgagacatacgctgagtacatgcccatgaaa
ttgcggatcgggctgcgtcacccagacccggttgtggagacaagctccctgtccagtgtg
aatcctcccaacgtgtggtacagaatgtccataccggaggagaccatcgaccgtggctgg
ctgtctgctctgcagctggaggccatcacatacgctgcccagcaacatgaaacattcctc
cctaacggcgaccgagcgtcctatctgataggagacggggccggagtggggaagggccgg
accatcgctgggataatctacgagaactacctcctgggcagaaagagatcactctggttc
agtgtttctaatgacctgaagtatgatgcagagagggatctgaaagacataggagccaag
aacattccagtctattccctcaacaagtttaagtatggtaagatctcgtccaaacacaac
ggcagtgtgaagaagggggtgatcttcgctacgtactcctctctgataggagagagccag
tctggagggaagtacaagacccgcttcaaacagctgctccactggtgtggacaggtcttc
gacggagtcattgtgtatgacgagtgtcacaaagcaaaaaatgtctgtcccatcggctcg
tccaaacccaccaagactggactggctgtcctggagctgcaaaacaaactgcccaaggcg
cgggtggtgtacgctagcgccactggtgcgtctgagccccgtaacatggcctacatgagc
cggctgggcatatggggggaggggacccccttcagagagtttagcaacttcattcaggct
gtggagcgccgaggtgtgggtgctatggagatagttgccatggatatgaagctgaggggg
atgtacatcgccaggcagctgagcttcacgggtgtcacgttcaagattgagcaggttcct
ttgacaacccactacatcaagatgtacaacaagtctgtacacctgtgggtggctgcgcgg
gagaagttccaggcggctgctaacctgatggatgcagagcagcggatgaagaagtccatg
tggggtcagttctggtcggcccaccagaggttcttcaagtacctctgcattgcgtccaag
gtccgcagagtggtgcagctcgccagggaggaggtcaaaaacggaaagtgtgttgtgatt
ggtctccagtcgacaggagaggccagaacactggaggccctggaggaaggaggaggagag
ctcaacgactttgtctccaccgccaaaggtgtgctccagtccctggtagagaagcacttc
ccagctccagacagagaaaagctgttcagcctgctgggcattgacctgccggccatgaag
atccccttccccagcgaggctgcagcagagcagaagggaaagaagaggaaaggtgccaac
ataaagaaggcagagaagaggaagagaaaatcaggtggtctgtcggggaacagctctgat
gacagcaaatcagaagagtctcataaggacgatgcggagagtgacgacagcttcaagtcg
gtcagctcgggagaagatgacgaagacgacttcaatcccttcaaggatgattccagcgag
gatgaggaggatgacccctggctgtctggaaagaggaaaggggtgaagaaatgcaaggag
aagaagaagaagaagagcattgacccagactctatccacagtgccttgttagcttctggt
ctgggctccatcaggcctgctttcaccacccccccagtcaagacctccagcacacctgcc
atagccaaggtagaggtagatgacagctgtatgaccagtcaggatgctgtggaagatgct
cagcagatgaagagagatctgttggaccagctagataagctggctcaggatctacctccc
aacactctggatgaactcatagatgagctgggaggacctgacaacgtggctgagatgact
gggcgtaaaggccgggtggtcagtaacgacgatggcagcatctcctacgagtctcggtct
gagctggatgttcctgtggaaatcctcaacctcacagagaaacagaggttcatggacgga
gagaagaacatagccatcatctcggaagcagccagctcgggcatctccctgcaggctgac
cggcgagtaaagaaccagaggaggagggtccacatgaccctggagctgccctggagtgca
gacagagccatacagcagtttgggaggacccataggtctaaccaggtgactgctcctgag
tatgtgttcctcatctctgagctggctggggaacagaggtttgcctccattgtggccaag
agactggagagcctgggtgccctcacccatggagacagaagagcaacagagacgagagat
ctcagcaggttcaacttcgacaacaaatatggcagaaatgctctggagattgtgatgaaa
tccatcgttaacctggactttccgttagtgaatcctccatcgaacttcgaaggggatttc
tacaaagagatccttcatgggttgatcggagtgggtctgatccatgtggaggacagatca
gggatcctgtctctggacaaagactacaacaacatagggaagttcctgaaccgtatcctg
gggatggcggtgcaggagcagaacgctctgttccagtacttttctgacacgctggcagcc
gtcatacagaatgccaagaagaatggacgctacgacatgggcattctggacctaggttct
ggggatgagaaggtgaagaagatggaagccaaaaagttcctgactccaggctactccacc
tccggacatgtggagctctacacggtgagtgtggagagaggcatgtcctgggaggatgct
acccatgcctgggctgagcagagtggacccgatgatggcttctatgtacagataaggaac
aacaagaagactgctatcttggtgaaggaggtgaacagtaagaagaggctgttcctggtc
tacagacccaacacaggcaaacagctgaaactggaggcctacgctgacatcaagaagaag
tgtaaaaaggtgctgtcagatgatgccaagcagcactggatggaccagtaccagtcttca
gctgagatctgctctcatgcttactggcgtggtaactgtaagaaggtgtcggtgggtctg
cagtgtgaggtgggtctgcgctgcaggacgtactatgtgctgtgtggatctgtgctcagt
gtgtggaccaaggtggagggagtcctggcctccgtcagcggaaccaacatcaagatgcag
atcgtccgtctcaggacggaggacgggcagaggattgtgggcctgatcattccaattaac
tgcgtctctcctctgaccaacatcctgtcgtcgtctgaccagtctcagcaactggccgtt
cagcagcaacagaagtggcagcagctgcaccctcagagcctcagccacatgcataacatg
ggttcaccacccagtctgacctga
DBGET
integrated database retrieval system
