Oncorhynchus tshawytscha (Chinook salmon): 112257479
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Entry
112257479 CDS
T05605
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
otw03009
]
112257479 (ddx55)
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112257479 (ddx55)
Ribosome biogenesis [BR:
otw03009
]
Eukaryotic type
Pre-60S particles
Helicases
112257479 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
Helicase_C_2
SBF_like
DUF1340
YbjM
HMUDK_HMUD1
RestrictionSfiI
Motif
Other DBs
NCBI-GeneID:
112257479
NCBI-ProteinID:
XP_024286832
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Position
LG09:complement(17503811..17508580)
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AA seq
607 aa
AA seq
DB search
MDNTTEGKWDSLPVKLNDGITQTLNELGFTHMTPVQSACIPLFMRNKDVAAEAVTGSGKT
LAFVIPIIEILIKREDKLKKMQVGALIVTPTRELALQISEVMGQFLQKFPQFRQILLIGG
SNPIEDVEKFKEQGANILIATPGRLEDMFRRKADGLDLALSVKFLEVLVLDEADRLLDMG
FEASLNVILGYLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAASCTQKTPA
RLCNYYTICRAEDKFNSLVAFLRQHKHEKQLVFFSTCACVEYFGRALEALIKSVTIHCIH
GKMKHKRNKIFSEFRSLKSGILVCTDVMARGIDIPEVHWVLQYDPPSCASAFVHRCGRTA
RIGNKGNATVFLLPMEESYVTFLSINQKCPLEQMAPVSDVVDVLPKVKALALADRAMFDR
GMRAFVSTVQAYAKHECSLIFRVKDLDFVALARGFALLRMPRMPELKGKNFPDFIETTID
TDNIRYKDKQREKLRQKLLIELKEKREERAAAPKRHNDKNKAWSRQKNRKDRRRKTAAKR
NRDEGSEMDDEDMKELLKDTRLLKRLKKGQISEEDFEKQVTAGPKSQRKTAAGPSEDPPS
SAGEEDE
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggacaacacaactgaaggaaaatgggatagtttacccgttaaacttaacgacggtatt
acgcaaactctcaatgagcttggatttacacatatgacaccagttcagtctgcctgtatt
ccactgtttatgcgaaataaagatgtggctgccgaagctgtgactggcagtggaaagaca
ttggccttcgtgattcccatcatagagatacttataaagcgagaggacaaattgaagaaa
atgcaggttggtgctctgatcgtcacgccgaccagagagctggccctgcagatcagtgag
gtgatgggccagttcctccagaagttccctcagttcagacagattctgttgattggaggg
agcaaccccattgaggatgtggagaagtttaaggaacagggggccaacatattgattgcc
accccggggcgtctggaggacatgttcagaaggaaggcagatggtctggacctggccttg
tcagtcaagtttctggaggtcctggtcctggatgaggctgaccgcctactggatatgggc
tttgaggccagtctgaatgttatcctggggtacctccctaagcagcgtcgtacaggtctg
ttttcagccactcagactcaggagctggaaaagctggtgagagctggtctcaggaaccct
gtacgaatcaccgtgaaggagaagggcgtggccgccagctgcacccagaaaacacctgcc
aggctctgcaactactacacaatctgcagagcggaggacaagtttaacagtctggtagcg
tttcttagacaacacaaacatgagaaacagctggtgttcttcagtacatgtgcgtgtgtg
gagtactttggccgagccttggaggccctgattaagagcgtcaccatccactgcatccac
ggcaagatgaaacacaaacgcaacaagatcttctcagagtttaggagcctaaagagtggt
atcctggtgtgtactgacgtcatggccagaggcattgatatcccagaagtccactgggta
ttgcagtacgacccccctagttgtgccagtgcctttgtgcaccggtgtggacggactgcg
cgcattggtaacaaaggcaacgccacagtcttcctgctccccatggaggaatcttacgtt
accttcctgtccatcaaccagaagtgtcctctggagcagatggccccagtgagtgacgtt
gtggatgttctgcccaaggtgaaggccctggctctggcagaccgggccatgttcgacagg
ggcatgagggctttcgtctccaccgtacaggcctacgccaaacacgagtgcagcctcatt
ttcagggtcaaagatctggactttgttgcgctggcccgtggcttcgccctcctccgcatg
cccaggatgcccgagctgaaagggaagaacttccctgacttcatagaaacgaccatagac
acagacaacatccgctacaaggacaagcagcgggagaagctgaggcagaagctgctgatt
gagctaaaggagaagagggaggaaagggccgctgcccccaagagacacaacgataagaac
aaagcctggtccagacagaagaacaggaaggaccgcaggaggaagactgctgccaagagg
aaccgggatgagggctcggaaatggacgatgaggacatgaaggagctgttgaaagacact
cgtctcctgaagagattgaagaagggacagatcagcgaggaggactttgagaaacaggtg
acagcaggaccgaagagccagaggaagacagcagcaggcccctcagaggacccacccagc
tcagcgggagaggaggacgaatga
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