Oncorhynchus tshawytscha (Chinook salmon): 112257498
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Entry
112257498 CDS
T05605
Name
(RefSeq) very low-density lipoprotein receptor isoform X1
KO
K20053
very low-density lipoprotein receptor
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112257498
Membrane trafficking [BR:
otw04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
112257498
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Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
EGF_CA
cEGF
SGL
Motif
Other DBs
NCBI-GeneID:
112257498
NCBI-ProteinID:
XP_024286877
LinkDB
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Position
LG09:18314796..18346165
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AA seq
856 aa
AA seq
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MLTSILEILILRICLQQCGFVHGSKTECEPSQFQCGNGRCIPSVWQCDGDEDCSDGSDEN
TCVRKTCAEVDFVCRNGQCVPKRWHCDGEPDCEDGSDERVEVCHTRTCHVNEFSCGAGST
QCIPVFWKCDGEKDCDNGEDEMSCGNITCASLEFTCASGRCISLNFVCNGEDDCGDGSDE
QECAPSSCGPSEFQCGNATCIPGNWVCDDDVDCQDQSDESPQRCGRQPTPPAKCSSSETQ
CGSGECIHRKWRCDGDPDCKDGSDEANCSVRTCRPDQFKCEDGNCIHGSRQCNGLRDCAD
GTDEVNCKNLTQCNGPDKFKCRSGECIEMSKVCNKARDCPDWSDEPINECNLNECLLNNG
GCSHICRDMVIGFECDCTPGLQLIDRKTCGDINECMNPGICSQICINLKGGYKCECHNSY
QMDPTTGVCKAVGKEPCLIFTNRRDIRKLGLERREYTQIVEQLRNTVALDADFTQQRIFW
ADLSQRAIFSTVLDKRGDVGSHVKVIDNVTPVGIAVDWIYNNIYWSDLGTKTIEVANFNG
TKRKVLFSSGLKEPASIAVDPLSGFLYWSDWGEPAKIEKSGMNGVDRQVLVQTDIQWPNG
ITLDLIKSRLYWVDSKLHMLCSVDLNGDNRRKVLQSPDYLAHPFALTVFEDRVFWTDGEN
EAIYGANKFTGSDVITLASNLNEPQDIIVYHELIQLSGTNWCNEKGLNGGCAYMCLPAPQ
INKYSPKYTCACPQDQTLASDALHCRPATTVPNVVPKPVPSEANSSTSIHEVNFTARGST
AAWAILPVLLLAMAAAGGYLMWRNWQLKNKKSMNFDNPVYLKTTEEDLNIDINRHTSNIG
HTYPAISVVNTEDDLS
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgttgacgtctattctggagattcttatcctacggatatgtcttcaacagtgcggtttt
gtacacggatcaaagacagaatgtgagcccagtcagttccagtgtgggaacggtcgctgc
atcccgtctgtctggcagtgtgacggggatgaggactgctcggacgggagtgacgagaac
acctgcgttcggaagacctgtgcagaggtggactttgtctgtcgtaatggccaatgcgtc
cccaagagatggcactgcgacggagagccagactgtgaggatgggtctgacgagcgtgtg
gaagtgtgccacaccaggacctgccatgtgaatgagtttagctgtggggccgggtccacc
caatgcatccccgtcttctggaagtgtgatggagagaaggactgcgataacggagaggat
gaaatgagctgtggtaacatcacgtgcgcctcgctggagttcacctgtgcaagcggccgc
tgcatctcccttaacttcgtctgtaacggggaggacgactgtggtgacgggagtgatgag
caggaatgtgctccgtcctcctgtggtcccagcgagtttcagtgtggcaatgccacctgt
atccctggcaattgggtctgtgacgatgacgtggactgccaggatcaatcggatgagtcc
cctcagcgatgtggtcgccaacccacgccgccggccaaatgttcatccagcgagacacag
tgtgggtctggggagtgcatccaccgcaagtggcgatgtgacggggacccagactgcaag
gatggcagcgacgaagccaactgttctgttcgtacctgcagaccggaccagttcaagtgt
gaggacggcaactgtatccacggcagcagacaatgcaacggtttgcgtgattgtgcagat
ggcaccgatgaagtcaactgcaaaaacttgacacagtgcaatggccctgacaaattcaag
tgtcggagtggagagtgtatagagatgagtaaagtgtgcaacaaggcccgggactgtcca
gactggagcgacgagcccatcaatgagtgcaacctgaatgagtgtctgctgaacaatgga
ggctgctcccacatctgcagggacatggtgattggcttcgagtgtgactgcacccctgga
ctgcagctcatagaccgcaagacctgtggcgacatcaatgaatgtatgaaccctgggatc
tgtagtcagatttgtatcaacctgaagggaggttataagtgcgagtgccacaacagctac
cagatggaccccaccacaggagtgtgcaaggctgtgggcaaggaaccctgtcttatcttc
actaaccgaagggacatccggaagctgggtctggagcggagggagtacacccagattgtg
gagcagctgcggaacacagtggcactggatgcagacttcacccagcagaggatcttctgg
gcagacctgagccagagggccatctttagcacggtgttggataagagaggagatgtagga
agtcatgtgaaggtgattgataatgtgacacctgtggggatcgctgtggactggatctat
aacaacatctactggtcagacctcggcaccaagaccattgaagtggccaacttcaacggc
accaagcggaaagttctcttcagcagtggtttgaaagagcctgcatccatcgctgtggat
ccactttctggattcctctattggtcagactggggtgaaccagcgaagattgagaaatct
ggtatgaacggggttgacaggcaggtcctggtccagactgatattcagtggcccaatgga
atcactctagacctgatcaagagcagactgtactgggtggactccaagctgcacatgctc
tgtagcgtggacctgaacggcgacaaccgtaggaaagtgctgcagtccccagactacctg
gctcacccctttgcgctcactgtgttcgaggatcgagtattctggacagatggggaaaac
gaggcgatctacggagcaaacaagttcacagggtctgatgtgattaccctggcaagcaat
ctgaacgagccgcaggacatcattgtttaccatgagctaatccagctgtccggaacaaac
tggtgcaatgagaagggtctgaacggaggctgtgcctacatgtgcctgccagcgccacag
atcaacaaatactcccccaagtacacatgtgcgtgtccccaagaccagacgctagcctca
gacgcccttcactgcagaccagcgaccacagtgccaaatgttgtccccaaacctgtccct
tctgaagccaacagcagtacatccatccatgaggtgaacttcacagctagaggatctaca
gctgcctgggctatcctccctgtgttgttgctggccatggctgcagcaggaggctacttg
atgtggcgtaactggcagctgaagaataagaagagcatgaacttcgacaatccagtgtac
ctgaaaaccacagaagaggacctcaacatagatatcaacaggcacacctccaatataggc
cacacatacccagcaatatcagtggtgaatacagaagatgacttgtcataa
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