Oncorhynchus tshawytscha (Chinook salmon): 112257499
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Entry
112257499 CDS
T05605
Name
(RefSeq) cingulin-like protein 1 isoform X1
KO
K21110
cingulin-like protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
112257499
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Gene cluster
GFIT
Motif
Pfam:
Myosin_tail_1
DUF4201
CENP-F_leu_zip
Fez1
DUF1664
Motif
Other DBs
NCBI-GeneID:
112257499
NCBI-ProteinID:
XP_042179566
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Position
LG01:6930093..6962066
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AA seq
1233 aa
AA seq
DB search
MESHRHGVSGSSPDFSRIQQGYNMQQPRPGPRGSPRPHSDSSSMFGVRVQVQGIEGLPYV
VLNGDSRAALPSGGLESYSRNWDHQEVFVNAHSQSEYTFMVNDGRSSFGTPNVERSSFGS
PNVERRPPNHQREYARGGALTEVKESQRIPLASAAFMFDFQESHLQQSQRTVPTSNTVLN
FQRHPELLKPYNPDRNSLSPLLASTRRLSVPPTQTASVPRPGHLTTSLQSGAEATLIQAA
GSRPGAARIPLPAGGVEWAPTPVSTTSQTQCPGPVSAPTQAQCPGPAPVSAPTQIQCPGP
APVSAPTQTQCPGPAPVSAPAPHHSSLATLLSPPNEVTNIPRRYPNSVYTEPISSIGSLI
NQFDSPQQMGRAGPRRGRIAPEDRRRSRSVDSRQQCHSYPLDPSSPASFIRGARGETSGG
STSAPGSPKVRGANGPSTVMFNRLQWEEKEPSGRSSRAVNVLYGVEETSMTRSRSLNHTE
EESERDIQIITPDLLGGQRGQHEVSIEPQPNEDTAKKILFTYLNDGTTDKTSITEKKVNL
VFDRISQLKWKTAENVEEEIRDYAAKAKEAKELQRTGAELEREVSQLKTQLEHKIMSGRS
LAEVCYKAQTDMKTIQEELDRRQEELSTLRDRLAQMEAELEVAIEELVRVKTEREQGRTE
MKDLQQQLSEMHDELDQAKNTTQADGTEKQLLLKDLAQLRLDFQGLIQVQEEQEEVLHWR
ERELTALKGALNEEVESHDKELGIMKEVRDKEVQKLREEVEEVKESNTVLGQEKREMEEE
RGEARGQVNQLMQEREELRGQVEELESRVEQLNLVIKDSKSLQRQLVKCIEQLGEREKRQ
VEETLEEVREKEEEMSQANKALLVRLENVQSEMTQLNHQHREMKERLKEEMRRTEELKRM
KSDLDEERRLQNSTVEELQKEMSTIVEGCEVSTEKLQLQVDEVREKSHSALSELQQQLQE
KGVELEKSRQTARKLQEELLPLEQGLERGRREWEEAQQRGRQLERKVEELEERNAHAHED
HARQVKLMEGEVSHLERDLSEERNSADLLMDRVDQWKQQMELIRVELLQESAVKQDLECE
KITLERQNKDLKSRVSHLEGSQRSNQDVVVSRLEGRVQELEGRLEGEERDNINLQQANRK
LERKVKEMTIQVDDEHISMQNQNDQLNQRLKSVKRQMDGAEEEIERLENSKRKLQRDLDE
RIETNDQVLSQLNTLRSEMRRKQQKSAPLLNDP
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atggagtctcacagacacggagtgagtggctcttctccagacttcagtagaatacaacag
ggctacaacatgcagcagcctaggcctggtcccagaggcagccctcgacctcacagcgac
agcagcagcatgttcggggttagggtacaagttcagggaattgagggtcttccttacgtt
gtgttgaacggggatagtagagcagctctgccatctggtggcctggagagctacagcagg
aactgggaccaccaggaagtgtttgtcaatgcccacagccagtctgagtacaccttcatg
gtgaatgatgggcgatcttcattcggtactcccaatgtggagcgatcttcattcggtagt
cccaatgtggagcgcagacctcccaaccaccagagggagtatgctcgtggaggtgctctg
actgaggttaaggaatcacagaggattccgctggcgtccgctgcgttcatgttcgacttc
caggagtcacatttacagcagtcacagaggaccgtgccgacatctaacacagtgttgaac
ttccagagacacccagagctgctgaaaccctacaacccagataggaacagcctcagcccc
ctcctagcctccacccgaagactctctgttccgcccactcagacagcctctgtacctagg
ccgggacatctcaccacatctctccagagtggggcagaggccaccctgatccaggcagca
gggtctagaccaggagcagccaggatccctctgcctgctgggggtgtagagtgggccccc
acccctgtctcgaccaccagccaaacccaatgcccaggccctgtctcagcccccacccag
gcccaatgcccaggccctgcccctgtctcagcccccacccagatccaatgcccaggccct
gcccctgtctcagcccccacccagacccaatgcccaggccctgcccctgtctcggcccca
gcgccccaccactcttctttggccaccttactaagccccccaaacgaggtcaccaacatc
cccagaagatacccaaactcagtgtacacagagcccatctcctccataggtagcctgatc
aaccagttcgacagcccccaacagatgggtcgagctgggcctaggagagggaggatagcc
cctgaggaccgaaggaggtcacgtagcgtggacagcagacaacagtgtcactcataccca
ttggacccctccagccctgcctcgttcatcagaggggccaggggagagacttcaggagga
tccaccagcgccccagggtcacctaaggtgagaggggccaacggaccctccactgtaatg
tttaatagactacagtgggaggagaaggagcctagcgggaggtcatccagagcggtgaat
gtgctgtacggagtggaggagacctccatgaccagatccaggtctctcaaccacactgag
gaggagtcagagagagacattcagatcatcactccagatcttctgggaggtcagaggggt
cagcacgaggtctcaattgaaccacaaccaaatgaagacaccgccaaaaagatactgttc
acttacctcaatgatgggactactgataaaacctcaatcactgagaagaaggtgaacctg
gtgtttgacagaatcagccaactgaagtggaagactgcagagaacgtggaggaggagatc
agggattatgctgcgaaggccaaggaggcgaaggagcttcagaggacaggagcagagctg
gagagagaggtgtcacagctgaagacacagctggagcataagatcatgagtggtcggagt
ctggcggaggtgtgttacaaagcccagacagacatgaagactattcaggaggaactggac
aggagacaggaagaactctctacgctacgggataggctggctcagatggaggcggagctc
gaggtcgccatagaggagctagtccgggtgaagactgagagagagcagggccgtacagag
atgaaggaccttcagcagcagctgtctgagatgcacgatgagctggaccaggctaagaac
acaacacaggcagacggcacagagaaacagctccttctaaaggatctggcccagctgcgg
ttggacttccaggggctcattcaggtgcaggaggagcaggaggaggtgctacactggagg
gagagggagctgactgccctgaagggagccctgaacgaggaggtggagagtcatgacaag
gagctgggcattatgaaggaggtgcgcgacaaggaggtgcagaagctcagagaggaagtt
gaggaggtgaaagagagtaacacagtgctgggccaggagaagagggagatggaggaggag
agaggggaggcacggggacaggtgaatcagctgatgcaggagagggaggaactgagggga
caggtggaggaactggagagtagggtggagcagcttaacctcgtcatcaaggactccaaa
tccctgcagagacagctggtgaaatgcatagagcaactcggtgagagggagaaacggcag
gttgaggagactctagaggaggtgagggagaaggaagaggagatgtcccaggcaaacaaa
gcccttctcgtacgtctggagaatgtacagagtgagatgacccagctgaaccaccagcac
agggagatgaaggagaggctgaaggaggagatgagaagaacagaggagttgaagaggatg
aagagtgatctggacgaggagaggagactgcagaacagcactgtggaggaactgcagaag
gagatgagtactatagtagagggctgtgaggtgtccactgagaagctccagctccaggtt
gatgaagtcagagagaagagccactccgcgctgtctgagctccaacaacagctgcaggaa
aagggagtggagttggagaaatcccgacagactgccagaaaactgcaggaagagctgctt
cccctggagcagggtctggagcggggtcgtagggagtgggaggaggcccagcagagaggc
agacagctggagaggaaggtggaggagctggaggagaggaatgcacacgcccacgaggac
cacgcccgacaggtcaaactcatggagggtgaggtgagccatctggagcgtgatctgagt
gaggagaggaacagtgcagatctcctgatggacagagtggaccaatggaaacaacagatg
gagctgataagagttgagcttctgcaggagagtgcagtcaaacaggacctggagtgtgaa
aagatcactctggagagacagaataaggatctgaagagcagggtgtctcatctagagggc
tcccagaggtccaaccaggatgttgtggtctccaggctggagggaagggtccaggagctg
gaggggaggctggagggagaggaaagagacaacatcaacctgcaacaagccaacaggaaa
ctagagagaaaagtgaaggagatgacgatacaggtggacgatgagcacatatctatgcag
aaccagaatgaccagttgaaccagaggctgaagagtgtgaagagacagatggatggggct
gaggaggagatagagcgactggaaaactctaagaggaagttacagagagatctggatgaa
cggatagagaccaatgaccaggtcctcagccagctcaacaccctgcgatcagagatgagg
cgtaagcaacagaaatcagcaccgctcctgaatgatccttaa
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