Oncorhynchus tshawytscha (Chinook salmon): 112257534
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Entry
112257534 CDS
T05605
Name
(RefSeq) nipped-B-like protein B isoform X3
KO
K06672
cohesin loading factor subunit SCC2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
112257534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112257534
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
112257534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
HEAT_EZ
HEAT
Cnd1
HEAT_GCN1_C
Cnd3
ARM_ECM29
Motif
Other DBs
NCBI-GeneID:
112257534
NCBI-ProteinID:
XP_024286943
UniProt:
A0AAZ3NS48
LinkDB
All DBs
Position
LG09:19910090..19980120
Genome browser
AA seq
2679 aa
AA seq
DB search
MNGDMPHVPITTLAGIASLTDLLNQLPLPSPLPATTTKSLLFNGRIAEEVNCLLACRDEN
LVSQLAHSLNQVSTEHIELKDNLGSDDPEGDVPVLLQTVLSRNPNIFREKNIMQQPMMPQ
YKMSQNSMHGSPASTNYQQTTISHSPSSRFAPPQMGSDARFTPQQNSPVPSPYAPQSPAA
YMQQYPHPPSYSQHQQIQQGSPQRPVQPCLEVQTQPQASPHQNPSTPTLVASPMVPGGMR
NIHDNKVSGQISSNSANHNARHGSNDDYMNIVHRLGNEESDPSMRNASFPLRSPQSVCSP
AGSEGTPKAGLRPSLILHSPNPYASPRDSAPDLLLDSPDCKKKQKKLTKEEKEQLDKAAM
YDIVSSPSKDSTKLTLKLSRVKSTEMDPSGELLPGAEDQDTDLAYNSLQFSRAQQDLAHR
LAPGQGEQSGYQQVPVLQNTKQAGGVISGAVYDDAEMDALAEIERIERETLIERERCSKE
VQDKDKPLKKRKQDSYPQEPGAGGTAGATQPGVGGGNAGSKLAPQEASAASNGASRPALM
VSIDLQQAGRADGQPEVNIGTHTPALRSWPEERLCPGDGPDSTGVLRLNSKTEGDTLQTA
DVRPEVIKQRADTPKKLGPDVRPETPKHKHENRRDSSKHRHDGKPDNSKARPDARMPDKP
RQRHEGRSDSGHREDRSRDSDPSRIRRPETPSKSSRGEHDSKHGRDRDRERGDKDRERKH
RTEAGDPRDRRSPEQRSRPESPRVKQEGRGGVDHSGRQRTDRPGPNLKSPNKEERRSGEE
RRSGDGSRNRQDSKQQPAENKQEFPAYLLGGVKSGGFKNFVIPKVKRDKDGHVLAAEMRK
PGLGSVVEGWKEPRVKLERLGLVEKMKTAAKPVVVLQKLSIDEVQKIIRERKDRSARSSK
SSKSRPSHWISEKESTMPLCERVKMNKRKRSTIKEKPKYAEVNSDDDDDDDDSVTESTRK
RHKKEREKTWEPDERRGSGRRGSGSRHRERSPEDSYDESPPPSMSDLARKMKKKEKQKKR
KAYEPKLTAEELMDSSTFKRFSASVDNILESLEDIDFNAMDDDEIPQELLLGKHQLSELA
SESAKIKAMGITFRLSSGKLVKVLNILEKNIQDGSKLSTLMNHDADAEDEERLWRDLIME
RVTKSADACLTALNIMTSARMPKAVYIEDVIERVLQYTKFHLQNTLYPQYDPVYRVDPHG
GGLLSSRAKRAKSSTHKQRVIIMLYNKVCDIVSNISELLEIQLLTDTTILQVSSMGITPF
FVESVSELQLCAIKLVTAVFSRYEKHRQLILEEIFTSLARLPTSKRSLRNFRLNSSDKDG
EPMYIQMVTALVLQLIQCVVHLPNNRDSHDEYDKKVDQDVLITNSYETAMRAAQNFLSVF
LKKCGSKQGEEDYRPLFENFVQDLLSTVNKPEWPAAELLLSLLGRLLVHQFSNKQTEMAL
RVASLDYLGTVAARLRKDGVTSKMDQRSIDRILRETQGNDETQQLQKALLDYMDENAETD
PSLVFARKFYIAQWFRDTLTEMEKAMKSQNQRGDEDSSEGQHHAKDIETTGEIMQRAEAR
KKYLRNIIKTAPSQFSTLRMNSDTVDYDDSCLIVRYLASMRPFAQSFDIYLTQILRVLGE
SAIAVRTKAMKCLSEVVAVDPSILARLDMQRGVHGRLMDNSTSVREAAVELLGRFVLSRP
QLTEQYYDMLIERILDTGISVRKRVIKILRDICLEQPTFNKITEMCVKMIRRVNDEEGIK
KLVNETFQKLWFTPTPNHDKDAMTRKILNITDVVSACKDTGYDWFEQLLQNLLKTEEDAA
YKPARKACVQLVDNLVEHILKYEESLTDIENKGVNSNRLVSCITTLFLFSKIRSQLMVKH
AMTIQPYLTTKCNTQSDFMVICNVAKILELVIPLMEHPSETFLTTIEEDLMKLIIKYGMT
VVQHCVSCLGAVVNRVTRNYKFVWACFNRYYGALTKLKTQHSEDSNNPVLAANKPALLRS
LFTVGALCRHFDFDEEEFKGPTKVVIKEKVMELLLYFTKHEDEEVQTKAIIGLGFQFIQY
PGLMFMQDVMSLYNGILSDRKSSVNLKIQVLKNLQTYLQEEDSRMQEADQQWKKLSKQED
LKEMGDISSGMSSSIMQLYLKQVLEAFFHTQSTVRHFALNVIALTLNQGLIHPVQCVPYL
IAMGTDPEPTMRNKSDQQLVEIDKKYSGFIHMKAVAGMKMSYQVQQAIWSAKGTVIRGYR
QDETTSALCAHLFSMVRSNRQHRRAFLISLLNLFDDSSKIEVNMLLYMADNLACFPYQIQ
EEPLFIMHHIDITLSVSGSNLLQSFKESLLKEPRQREKKSKERKYQSEEENSSSSSSSEE
EHHRHSISSNSSDEDNEVVHRPKKPKHRAQAPVESDSDSDLEMEDLDKVMQRLPDNPIPL
LDFANASQGILLLLVLKQHLKNLYGFSDSKIQKYSPTESAKVYEKAVNRKGHVHFSPHQT
LDFLTSDLANVELTYDIKRRIVKQYLDFKLLMEHLDPDEEDEEGEASASANARNKAITSL
LGGPSHQDHKNHHQDHKNHHQAPIETDDDESDGDEKTPVSSRRSRKHGDSAEASGHMNET
LAARDVIALCCPKYKDRPQIARIIQKTNTGYRVQWMAGSYSGVWGEAKKRDGRKTVPWVD
TIKESDIIYKKIALTSAHKLTNRVVQTLRSLYSAKEGTS
NT seq
8040 nt
NT seq
+upstream
nt +downstream
nt
atgaatggggatatgcctcatgttcccatcactactcttgctgggatcgctagccttact
gacttgttaaaccagctgcccctgccatcccctctccccgccaccaccactaagagtctg
ctgttcaatgggaggattgcggaggaagtcaactgtctgctggcctgccgggatgagaac
ctggtgtcccagctggctcatagcctcaaccaggtttccacagagcacatagagctgaag
gacaacctgggcagtgatgacccggagggagacgtgcctgtgctgctgcagacagtgctg
tctaggaaccccaacatcttcagggagaaaaatataatgcagcagccaatgatgccgcag
tacaagatgtcccagaattccatgcatgggagtccggcgtcgacaaactaccagcaaacc
actatctcacacagcccttctagtcgctttgcccctccacagatggggtcggatgccagg
ttcacgccccagcagaacagccctgtgcccagcccctatgccccccaaagccctgctgct
tacatgcagcagtaccctcacccacctagctactctcagcaccaacagatccagcaagga
agcccccagaggcctgtgcagccctgcctagaggtgcagacccagccccaggcctccccc
caccagaacccctccaccccaaccttagttgccagccccatggttcctggcggcatgcgg
aacatccatgacaacaaggtctccgggcaaatttcaagcaactcagccaatcacaatgcc
agacatggctccaacgatgactacatgaacatagtccacagattagggaatgaggagagt
gatccttccatgagaaatgcctccttcccactccgttcgccccagtctgtttgttcccct
gctggcagcgaagggaccccaaaagcaggattacgacctagcctcatccttcactcccca
aacccttacgcttccccccgtgacagcgctcccgacctcctcctggactctcctgactgc
aagaagaagcagaagaagctaactaaagaggagaaggagcagttggataaagctgctatg
tacgatattgtcagctctccctctaaagactctaccaagctgaccctcaaactgtcccgg
gtgaagtccactgagatggacccgtccggagagctcctacctggggcagaggaccaggac
actgacctggcctacaacagcctgcagttctcccgggcgcagcaggaccttgcccacagg
ttagccccgggccagggggagcagtcaggctaccagcaggtccctgtgctccagaacact
aagcaggctggaggggtgattagtggagctgtttacgacgatgctgaaatggacgcgctc
gctgagatcgagaggatagaacgggagacgctcatagaaagggagcgttgctccaaagag
gttcaggataaagacaagccactgaagaagcggaagcaggactcatatccccaagagcct
ggagctggaggtacagcgggggcaacccaacctggcgtgggagggggaaatgctggcagc
aagctggcaccccaggaggctagtgctgccagtaatggtgcgagccggcctgccctaatg
gtcagcatcgacctgcagcaagcaggtagagctgacgggcagccagaggtaaacataggc
acccacacccctgccctgaggagctggcctgaggaacgcctgtgtcctggggacggcccc
gactccactggagtcctgcgactaaactccaagacagaaggagacacactacagactgca
gacgtccggccagaggtcatcaagcagcgtgccgacacccccaagaagctgggacccgac
gtccgaccggagaccccgaaacacaagcacgaaaacagacgagactcgtccaaacatcga
cacgatggcaaacctgacaatagcaaggcccgccccgacgccaggatgcctgacaagcca
cgacaacggcacgagggtcgctcagactctggtcacagggaggacaggtcccgggacagt
gacccatcccgcatccgcaggccagagacccccagcaagtccagcaggggggaacatgac
tccaaacatggacgggacagagacagggagcggggggataaggacagggagaggaaacac
aggacagaggcaggggatccacgggaccgacgatctccagagcagcgctccaggccagag
agcccgcgggttaagcaggaagggcgagggggggtggaccacagtgggcgccagaggact
gaccggccaggccccaacctcaaatcccccaataaagaggagaggaggagcggggaggag
aggaggagtggggacggcagcaggaaccgacaggactctaagcaacaacctgctgaaaac
aagcaggagttccctgcttacctgctggggggtgtaaagtctggaggctttaagaacttt
gtgattcccaaagtgaagcgggataaggatgggcatgtgttggcagctgagatgaggaag
cctggtctgggttcagtagtggagggctggaaggagccccgggtcaagctggagcgactg
gggctggtagagaagatgaagacagcagccaaaccggttgtggtgctgcagaaactcagc
atcgacgaggtgcagaaaatcatcagggagaggaaagatagaagtgcacgtagctccaag
tcctccaagagcagaccctctcattggatatctgagaaagagtccaccatgccactgtgt
gagagggtgaagatgaacaaacgcaagcgcagcaccatcaaggagaagcccaagtacgcc
gaggtcaactccgatgatgacgatgatgacgacgactctgtgacggagtctacgcggaag
cgtcacaagaaggagcgggaaaagacatgggagcctgatgagaggagaggctcagggcgc
agggggtccggcagccgccaccgtgaacgcagcccagaggattcatacgatgagtcccca
ccgcccagcatgagtgaccttgccagaaagatgaagaagaaggagaaacagaagaaaaga
aaggcatacgagcccaagctgacagcagaagaactgatggactcctccacgttcaagagg
ttctcagccagtgtggacaacattctggagagcttggaggacattgacttcaatgccatg
gatgacgatgagatcccacaggagcttctgctggggaaacaccagctgagtgaactggcc
agtgaatctgctaagatcaaggccatgggcatcaccttcaggctttcatctggtaagttg
gtgaaggtcctgaacatcctggagaaaaacattcaggacgggtccaaactctccacactg
atgaaccatgacgcagacgcagaagacgaggagcgactgtggcgtgacctcatcatggag
cgcgtgacaaagtcagctgacgcctgtctgactgccctcaacatcatgacgtcggcccgc
atgcccaaggcggtgtacatcgaggacgtgattgagagggtgctgcagtacaccaagttt
cacctgcaaaacaccctctaccctcagtatgaccctgtctacagagtggaccctcacgga
ggtggcttgctgagctccagggctaagagagctaaaagctctacacacaagcagagggtg
atcatcatgctctacaacaaggtgtgtgacatcgtcagcaacatctctgagctcctggag
atacagctgttgactgacaccaccatcctgcaggtctcctccatgggcatcactccattc
tttgtggagagtgtcagtgagctacagctgtgtgccatcaaactagtgactgcggtgttc
tctcgctatgaaaaacacaggcagctcatcctggaagagatcttcacctctctggccaga
ttacccaccagcaaacgcagcctcaggaacttcaggctgaacagcagtgataaggatggg
gagcccatgtacatccagatggtcacagctctggtgcttcagcttatccaatgtgtggtg
cacctcccgaacaacagggacagtcacgacgagtatgataagaaggtggaccaagatgtc
ctgatcacaaactcttatgagacggcaatgcgagcagctcagaacttcctgtccgtcttc
ctaaagaagtgtggcagtaagcagggagaggaggactatcgcccactgtttgaaaacttt
gtccaggacctgctgtctacggtgaacaaaccagagtggccagctgctgagcttctcctc
agtctgctgggtcgtctactggtgcatcagtttagcaataagcagacagagatggctctg
agggtggcatcgctagactacctgggcactgtcgctgcccgcctgcgcaaagacggcgtc
accagcaagatggaccagcgctccatcgaccgcatcctcagagagactcaaggcaatgat
gagacccagcagctgcagaaggccctgttggactacatggatgagaacgcagagacggat
ccatctctagtttttgccaggaagttctacattgcccagtggttcagggacactttgaca
gagatggagaaggccatgaagtctcagaaccagcgaggggacgaggactcttctgaaggc
cagcaccacgccaaggacatcgagaccaccggagagatcatgcagagagccgaggcacgc
aagaagtacctccgcaacattatcaagaccgcgccctcgcagttcagcacactgaggatg
aactctgacactgtggactatgatgactcttgcctgattgtcagatatttggcctctatg
aggccattcgctcagagcttcgatatttatttaacacagattctgagagtgctgggggag
agtgccatagctgtcagaactaaagccatgaagtgtttgtctgaggtggtggctgtagac
cccagtattctggccaggttggacatgcagcgcggggtccatggtcgtctgatggacaac
tccaccagtgtacgcgaggctgcggtggagctgctggggcgttttgtgctgagcagaccc
cagctcacagagcagtactacgacatgctgatcgagaggatactggatacgggtatcagt
gtgaggaagagggtgattaagatccttagagacatctgtctggagcaacccaccttcaac
aagatcactgagatgtgtgtcaagatgatccgcagggtcaacgacgaggagggcatcaag
aaacttgtgaacgagaccttccagaaactctggttcacccctacacccaatcacgataaa
gacgccatgacccgcaagatcctcaacatcacagatgtggtgtctgcatgcaaagataca
ggctatgactggtttgagcagctgcttcaaaatctgctgaagacagaggaagatgctgcc
tataagccagccagaaaggcctgcgttcagctggtggacaatctagtggaacacatccta
aaatatgaagagtctctcactgacattgagaacaagggggtgaattccaaccgtctggtg
tcctgcatcaccaccctctttctgttcagtaaaatccgatcccagctgatggtcaaacat
gccatgaccatccagccttatctcaccaccaagtgcaacacccagagtgacttcatggtg
atctgtaatgtggccaagatccttgagctggtgatccctctgatggagcacccctctgag
accttcctcaccaccatagaggaagacctgatgaagctcatcatcaaatacggcatgacg
gttgtacaacactgtgtgagctgtcttggagctgtggtgaacagggtcactcgcaactac
aagtttgtgtgggcttgtttcaaccgttactatggtgccctgaccaagctgaagacccag
cactctgaggactccaacaaccctgttctggctgctaacaaaccggccttgctgcgctcg
ctgttcactgtgggggcactctgtcgccactttgactttgacgaggaggaattcaagggc
cccacaaaggttgtgataaaggaaaaagtgatggagcttttgctgtacttcactaagcat
gaagatgaggaagttcagaccaaggccatcattggtctaggcttccagttcatccagtac
ccagggctgatgttcatgcaggatgtgatgagtctgtacaatggcatcctgtcggacagg
aagagctctgtcaacttaaagatccaggtgctgaagaacctgcagacatacctgcaggag
gaagactcgcgcatgcaggaggccgaccaacagtggaagaagctgtcgaagcaggaggac
ctgaaggagatgggtgatatctcgtcaggtatgagcagctccatcatgcagctgtacctg
aagcaggtgctggaggccttcttccacacacagtccaccgtacgacattttgccctcaac
gtcattgccctgacactcaaccagggcctcatccatcctgtacagtgtgtgccctacctg
attgccatgggaacggacccagagcccaccatgaggaataagtcagaccagcagctggtg
gagattgataagaaatacagcggcttcatccatatgaaggccgtggcggggatgaagatg
tcttaccaggtgcagcaggctatctggtcagctaagggtacggtgatccggggttaccgg
caggacgagacaacctccgccctctgcgcccaccttttctccatggtccgatccaaccgg
cagcaccgacgagccttcctcatctcactgctcaacttgtttgatgacagctcgaagatt
gaggtcaacatgctcctgtacatggcagacaacctagcctgtttcccctaccagatccag
gaggagcctctcttcatcatgcaccacattgacatcaccctgtctgtgtccggcagcaac
ctgctacagtcattcaaggagtccctgctcaaagagccaaggcagcgggagaagaagtcg
aaagagaggaagtaccagtcagaggaggagaactcgtcatcatcgtcgtcatcggaggag
gaacatcaccgccacagcatcagctccaacagtagtgacgaggacaacgaggtggtccac
aggcccaagaagcccaaacaccgggcccaggcccctgtggagtcagactctgactctgac
ctggaaatggaggacttggacaaggtgatgcagcgtctgcctgacaacccaatccccctg
ttggactttgccaacgcctcacagggaatactactactattggttctaaagcagcatctc
aagaacctctacggcttctcggacagtaaaatccaaaagtactctccgacggaatcggcc
aaggtatacgagaaggcggtgaacaggaagggtcacgtgcacttcagccctcaccagaca
ctggacttcctgacctctgacctggccaacgtagaactcacctacgacatcaagaggagg
atcgtcaaacagtacctagatttcaagttactgatggagcatttggaccctgatgaagag
gatgaggaaggtgaggcgtcagccagcgctaacgccagaaacaaagccatcacttcattg
ctgggagggcccagccaccaggaccacaagaaccaccaccaggaccacaagaaccaccac
caggctcctatagagacggacgacgacgagagcgacggagatgagaaaaccccagtgtca
tcacggcggtcgaggaagcacggcgactctgcagaggcatcaggtcacatgaatgagacg
ttggccgccagggacgtcatcgccctctgctgccccaagtacaaggaccggccgcagatc
gcccgcatcatccagaagaccaacaccggctacagagtgcaatggatggctggctcctac
tctggagtctggggcgaggctaagaaacgggacggacgtaaaacggtgccttgggtggac
actatcaaggagtctgacattatttacaagaaaatcgccttgacgagtgcacacaagctg
acgaacagagtggtgcagactttacggtcactgtactcagcgaaggagggaacttcctaa
DBGET
integrated database retrieval system
