Oncorhynchus tshawytscha (Chinook salmon): 112257540
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Entry
112257540 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: PDZ and LIM domain protein 5
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112257540
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112257540
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
112257540
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GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
PDZ_2
Zn_ribbon_IS1595
Motif
Other DBs
NCBI-GeneID:
112257540
NCBI-ProteinID:
XP_042182606
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Position
LG09:complement(20762026..20893806)
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AA seq
623 aa
AA seq
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MNSNYSVSLGGPAPWGFRLQGGKDFCLPLTISRLTDGGKAAKAKMSVGDVVLSIDGIATN
GMNHLEAQNKIKACTDNLNLTLQKASSVPKADTPKDEPLEIIKPVPITHPAPPFTSPSPQ
PGAAYNKTARPFGGGSNVGAVTSSLTAPKVASIPSASSAFTPAXPSSQQPQPPFPLASRS
RSPAPPSSAPXPRPGSGRSPTTPSSTPSSSSSSSPARVTAPSSNPGAPQSSCYNTPINLY
SNANACEVAIGQRRGLLEAQGVVVDQIKEQFNGNRVEPELTHASPLSEASKKRLIEDTED
WHPRTGTSQSRSFRILAQITGTEKDQAQENSAGKNKVVENAPPSGHITTSVKTMTKVPGA
PRNGSSVPPPTFKTPSAQVKPSWPAGGSAGFSKGGAAPSFGRVSNTAPVPTVPKVSDRPA
PQAHPKDQNSLVQRAEHIAAGTRTPMCGHCDKVIRGPFLVAMGMSWHPEEFNCSHCHMSL
VESGFVEERGTVYCAHCYEKFFAPTCTSCQQKVLGEVINALKQTWHVYCFLCASCQQPIG
NNTFHLEDGLPYCERDYYQLFGTSCHGCDFPIEAGDKFLEALGFTWHDTCFVCAVCNTSL
EGQAFFSKKDKALCKKHANTVKI
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcaactacagcgtctccctgggtggccccgccccctggggcttcagactgcag
ggaggaaaggacttctgtctgcccctcactatctcacggctgaccgatgggggcaaagca
gccaaagccaaaatgagtgtgggagatgtagttctgtctatcgacggaatcgccaccaac
ggcatgaaccatctggaggcccagaacaagatcaaagcctgcactgacaacctcaacctc
accctgcagaaagcttccagtgttcccaaggctgatacaccaaaggacgagccactggag
atcattaagcctgtgccaatcacccatccagctccgcccttcaccagcccctccccccaa
cccggtgctgcctacaacaagacggcccgcccctttggcgggggcagcaatgtgggtgca
gtcacttcctccctgaccgccccaaaggtggcctccatcccctctgcatcgtctgctttc
acccccgccngcccctcctcccagcagccccagcctcccttcccactagctagccgctcc
cgctccccagccccacctagctcggccccancccccagacccggctctggccgttcccct
accaccccctcctccactccctcctcttcttcctcatcctccccggccagagtgacagcc
ccctcctccaatcccggtgctccgcagtcctcttgctataacacgccaataaacctgtac
tccaatgccaatgcctgtgaggtggccataggacagaggcggggcctgttggaagcccag
ggtgtggtggtcgaccagatcaaagaacagtttaatgggaacagagttgaaccagagttg
acccacgcctcgcccctcagtgaggccagtaagaagcgtctgatcgaggacacagaggac
tggcatcctcgcaccggaacctcccaatccaggtccttcagaatcctggctcagatcacc
ggcacagagaaagaccaagcccaggagaacagcgctggaaaaaataaagttgttgagaat
gccccgcccagtggccacatcacaacatcagtgaagaccatgaccaaagtcccaggagcc
cccaggaatggcagcagtgtcccgccacccaccttcaagaccccgtctgcccaggtcaaa
ccctcctggccagctggaggttcagcaggtttctctaagggtggcgctgcgccctctttt
gggagggtcagcaacactgcaccagtacccacagtacccaaagtttctgaccgccctgcc
ccccaggcgcaccctaaggaccagaactccctggtacagcgggccgaacacatcgcagcg
ggaacacgcacccccatgtgtggccactgtgacaaggtcatcagaggtcctttcctggtg
gccatgggcatgtcctggcaccctgaggagtttaactgttcccactgccacatgtctctg
gtggagtctggcttcgtggaggagaggggaacagtgtactgtgctcactgctatgagaag
ttctttgcccctacctgcaccagctgccagcagaaggtcctgggggaagtcatcaatgcc
ctgaagcagacatggcatgtgtactgcttcctgtgtgcgtcctgccagcagccaatcgga
aacaacaccttccacctggaggacggcctgccatactgtgaaagagactactatcaactc
tttggtaccagttgccatggttgcgactttcccatcgaggcaggagacaagtttctggag
gcgttgggattcacctggcatgatacctgcttcgtgtgtgcagtctgcaacaccagtttg
gagggccaagccttcttctctaaaaaggacaaggctctgtgcaagaaacacgccaataca
gtcaagatctga
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