Oncorhynchus tshawytscha (Chinook salmon): 112257656
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Entry
112257656 CDS
T05605
Name
(RefSeq) sortilin-like isoform X1
KO
K12388
sortilin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
112257656
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Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
BNR_6
DUF7859
Motif
Other DBs
NCBI-GeneID:
112257656
NCBI-ProteinID:
XP_042160153
UniProt:
A0AAZ3NTA9
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Position
LG22:complement(40339449..40375260)
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AA seq
818 aa
AA seq
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MGVLAHCVILFIFQHLTSSYDFKEGQYNSGQYAFVKDPSLNIEKRSPDLDPFDSESSDHI
RSRRSADQGDCNRLQGFDTKLTNNTQTYSFNDLSGSVSLAWVGDATGVILALTTFQVPFF
MLRFGQSKLYRSENYGKSFQDVTNLINNTFIRTEFGIAIGPENSGKVILTGDVSGSLGSR
IFISRDFGNSFEQQDLPFNPLMQIIYNPIDANVLLVISNTNELWLSEDFGEKWRKIHDMV
CLAKWGMDSNLFFTTNLNGSCNERGMLDLRKTADYGKTIKTVAIKIFSFGLGGKFLFASV
MTGTGTLRMIHVSTNQGEDWNMAQLPPVGHEEFYSILSANDDMVFMHVDEPGDTGYGSIY
VSDDRGTVYSKSLERHLYTTTGGDTDFTNVTSLRGVFITSILAEDGSVQSVVSFDQGGEW
VPLQKPANTKCDSTAKDPDKCSLHIHAAYSTAMKLNVPMLPLSEPNAVGLIMAHGSVGDA
ISVMKPDVFVSDDGGYTWLQALEGPHHYAILDSGGLLVAVEHSAQPIKDIKFSTDEGQCW
HVHQFTSDPIHFTGLASEPGARSMNVSVWGYRDSLLSQYWVSVTIDFRELLTRDCEDQDY
VQWLAHSDDISDPNDGCMLGYKEKFLRLRKASVCLNGRDYEVNKQPAPCPCTLDDFLCDF
GYYRKENSSECVEQPDLKGHVLEFCLQGKKELLQTRGYRKIPGDKCEGGTQPERKEIDLS
KRCVNDLLGPQELLTDGHLSSSAPIVVTVLIIILLSVVAGFLFVKKYVCGGRFLVHRYSV
LQQHAEAQGDGVDEPLDSNHTRASNKTGLHDSDEDLLE
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgggagttctggcgcactgtgttattctttttatattccagcatttgacgtcatcttat
gattttaaagaaggacaatataacagcggtcagtatgcatttgtgaaagatcccagtttg
aatatcgaaaagagatcaccagatttagatccgtttgattctgaatcatccgaccacatt
aggagcagaagaagtgcggatcaaggagactgtaaccgtctccagggattcgacaccaag
ttgactaacaacacccaaacctattccttcaatgacctgagtgggtccgtgtcactggcc
tgggttggagacgccaccggggtcatcctggctctgacaacattccaggtgccgttcttc
atgttgcgattcggtcagtctaaactctatcgaagtgagaactacgggaagtcgttccag
gacgtcacaaacctcatcaacaacactttcatccggacagagttcggcatcgccatcgga
ccagagaactctgggaaggtgatcctgacaggtgatgtgtctggcagcctgggctctcgt
atctttatctccagagactttgggaacagctttgagcagcaggaccttccctttaacccc
ctgatgcagatcatatacaaccccatagacgccaacgttctcctggtcatcagcaacact
aatgaactctggctgtctgaggactttggggagaagtggaggaagatccacgacatggtg
tgtctggccaaatgggggatggacagtaacctattctttaccaccaacctcaatggatcc
tgcaatgaaagggggatgctagacttgagaaagacggcagactacgggaagaccatcaag
actgttgccattaaaatcttctctttcggcctggggggaaagttcctgtttgcttctgtt
atgactggaactggcactctgaggatgatccatgtgtcgactaaccagggggaggattgg
aacatggctcagctgcctccggttggccacgaggagttctattctatcttgtcagccaat
gacgacatggtgtttatgcacgtggatgaaccaggagacacaggctacggcagcatctac
gtgtcagacgacaggggtacggtgtactctaagtctctggagcgtcacctctacaccacc
acagggggagacactgacttcaccaacgttacctctctaagaggggtcttcatcaccagt
atactggcagaggacggctcggtgcagtccgtggtgtccttcgaccagggaggggaatgg
gtgcccctgcagaagcctgccaacaccaagtgtgactccacagccaaagaccccgacaag
tgcagtctccacatccacgcagcttacagcacggctatgaagctgaacgtccccatgctg
cctctcagtgaaccaaacgctgtaggactcatcatggcgcacgggagtgtgggcgatgcc
atctctgtgatgaagcctgacgtattcgtgtcagatgatggaggttacacctggctacag
gccctggagggaccacaccactatgccatcctggactctggtggactcctggtggccgtg
gagcactctgctcagcccatcaaagacatcaagttttccacagacgagggccagtgctgg
cacgttcaccagttcactagcgatcccatccacttcacagggctagcgtcggagccaggg
gcgaggtctatgaacgtcagtgtctggggctacagagactctctgctcagtcagtactgg
gtatcagtcaccatcgacttcagagagctgctcactagagactgtgaggaccaagactac
gtgcagtggctggcgcactctgatgacatcagcgaccctaatgacggctgtatgttgggt
tacaaggagaagttcctgcgtctgaggaaggcctctgtctgcttgaacggacgggactat
gaggtcaacaagcaacccgccccttgtccctgcaccttggatgactttctgtgtgacttt
gggtactatcgtaaagagaacagctccgagtgtgtggagcagccggacctgaagggccac
gttctggagttctgtctgcaaggcaagaaggagctgctgcagaccagaggctataggaag
atccctggggataagtgtgagggaggaacacagccggaaagaaaagagatagacctcagt
aagagatgtgtcaatgacctactgggacctcaggaactattgacggacggccatctgtcc
agctcagcacccatcgtagtgacggttctgatcattatcctgctcagtgtcgtggccggg
ttcctctttgtcaagaagtacgtctgcggtggaaggttcctggtacacaggtactctgtc
ctacagcagcatgctgaggcccagggagatggagtagacgagccattagacagcaaccac
actcgggctagcaacaagaccggcttacacgattcagacgaggatcttctggagtaa
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