Oncorhynchus tshawytscha (Chinook salmon): 112257672
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Entry
112257672 CDS
T05605
Symbol
abca5
Name
(RefSeq) ATP-binding cassette sub-family A member 5 isoform X1
KO
K05648
ATP-binding cassette, subfamily A (ABC1), member 5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
112257672 (abca5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
otw02000
]
112257672 (abca5)
Transporters [BR:
otw02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA5, 6, 8, 9, 10 subgroups
112257672 (abca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
RsgA_GTPase
AAA_29
AAA_23
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
112257672
NCBI-ProteinID:
XP_024287201
LinkDB
All DBs
Position
LG01:complement(78992571..79089438)
Genome browser
AA seq
1687 aa
AA seq
DB search
MYFIPIAPSCGERPHSCPRQLKHAGSNVSMQPNIIRRDAGVWHQTKSLLYKNLLIKWRTK
QQSLQELILPLLLLCLLILISTLNPHVYYGGISTMELEREDYHLLKGLGYTPINNATNHI
MEEVAQEMHLQDRLEMFSSEEDLENASLYEPSGYVGVVFMGSTPTSYRLRFPYNHLPLPS
DYTESIANCFASSVNCRAANYWYSGFIRLQTLIDAAIIQMQTKRSVWSEMDHLRVVMMGQ
PGSVEVQKFPHALISIYLVLAFTPFITFLIVNVAAEKEHRLKDTMTMMGLYDSAFWLSWG
LLYAALVTTMSILMSIIATYTALFPNSDFIVIFLLIFLYGISSIFFSFMLTPLFKKPKFA
STVGSMLTVVFGCLSLFTVLMKDFPQPLVWVLCLLSPSAFSIGIAQVVYLEAQGDGAVFA
TLANGPHPLYAPLLMLVLDCILYLLLAVYLDQVLPGEFGMRRSLVYFMKPSYWSRRSKRY
VEVSSAYETEVNGATGVNESVEPVSPEFRGKEAIRINNIRKVYKEKDSIVEALRGLTFDI
YEGQITALLGHSGAGKSTLMNILCGICPPTDGHASIYGSPVAEIAEGAEMRQLVGICPQF
NIIFDVLTVEEHLRIFAAIKGILPSDIDNEVSKVLKDLDLEKIMDAQAKNLSGGQKRKLS
VGIAILGDPKILLLDEPTAGMDPCSRHQVWSLLKSRRAGRVTVLSTHYMDEADILADRKA
VISQGQLKCVGSSLYLKTKCGVGYHLRMSIGGRCEVDGVTSLVKHHVPKAQLSRQQEAEL
TFTLPFESMDTFSGLFSELDCRPDLGIINYGVSMTTLEDVFLRLEAEAEVDQADYSVFNQ
EQVEDEGDASSLDDTDQRLLTFSDSKPEAVQGHALWRQQFSTVAWLHMLNMQRERKAFVY
TLALFLVFLAAVLVLSLATGNIQIHAPERQFLPIYLLRPNQAPRKYTTSLLVQNSSGSDI
SDFIRNLESQDIKVEMMKNTDYMSCAPHSAAINVTGSNKGFRYSVAFNSTTVHSLPMTVN
VLSNAILRGLNGTQRIHTWTKPFDYQIPDATSYALVYIEAIILGMLAAGMPAYFAMDHTR
DREIKCRSTLRISGLVPSAYWCGQAAVDIPFYYLILTTMTSILFSFHTANLLTSSNVTAV
ILCLIGFGPAMILFAYVVSFMFTRVQSNRDFFSVVSMMVCVVSASIVQLSFVNDNPGLTR
ILHNTLCFFNPLYPLMGCLNSITKATFLPSLYEEDFLWKNLLIAVLSPYLQCILLLFMLR
WLEIRYGGRTMKNDQFCRISSNTKAKVERNPEEGINEDEDVQMEKARVKEALTCQCCEEK
PVVVVSNLRKQFKCPREGISLKKRRTVATKNISFCVRKGEVLGLLGPNGAGKSTIMHMLS
GDTVPTAGQVLMGDYSTEFRPVDNPLEHIGYCPQVSPLWPRITLEEHLEIYAAIKGLRGQ
DVPGIITRVVNALELKGHLHKQAKNLSAGIKRKLCFALSMLGNPQIVLLDEPSTGMDPKS
KQRMWRAIRAAFKNRQRGAILTTHYMEEAEAVCDRVAIMVSGQLRCIGSIQHLKGKYGRG
YSLELKLREELTGLQQVALLHKEIRRIFPHAARQESFATLMVYKIPMEDVKSLAKSFSQL
ESAKQAFNFEEYNFSQSTLEQVFMEFAKEQENEEEEVGSLSTTFQWQRLRQDGPVPVNHT
DSIVHQL
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atgtatttcatacctattgcgcccagctgtggagaacgtcctcattcatgccccagacag
ttgaagcatgctggtagtaacgttagtatgcagcccaacataatcagaagagatgccgga
gtctggcatcaaacgaaaagcctgctttacaagaatcttctcatcaaatggaggactaaa
caacagagtctgcaggagttgatcctgccgctgctgctgctgtgcctgctgattctgatc
agcaccctgaacccacatgtctactacggaggcatcagtaccatggagctggagagggag
gactatcacttactcaagggcctgggatacacccccattaacaatgccaccaatcacatc
atggaggaggtggcccaggaaatgcacttgcaggatcgcctggagatgttctctagtgaa
gaggatctggagaatgccagtctttatgagccctcaggctacgttggggtggtcttcatg
ggcagcacacccacctcttacaggttgcgcttcccttacaaccatctgcccctgcccagc
gactacactgaatctattgccaactgttttgccagctcagtgaactgcagagcagctaat
tactggtactctggcttcatccgcctccagactctcatcgacgccgccatcatacagatg
cagaccaagcggtcagtatggagtgagatggaccacctgcgtgtggtgatgatgggccag
ccagggtcagtggaggtccaaaagtttccccacgctctcatctccatctacctggtgctg
gctttcacacccttcatcaccttcctcatcgtcaacgtggcagcagagaaggaacacagg
ctcaaagacaccatgaccatgatgggcctctacgactctgccttctggctatcgtggggc
ctgctgtatgcagctctggtcaccaccatgtccatcctcatgtccatcatcgctacctat
acagctctcttccccaacagtgacttcatcgtcatcttcctcctcatcttcctctacggc
atctcctctatcttcttctccttcatgctgacccctctgtttaagaagcctaaatttgcc
agtacggtgggctcaatgctgactgtggtgttcggctgcctgtccctgttcactgtcctg
atgaaggacttcccccagccgctggtctgggttctttgtctgctgtcccccagtgcattc
tccatcggcattgcccaggtggtgtaccttgaggcccagggggacggagctgtgttcgct
accctggccaacggcccccatcccctatacgccccccttctcatgctcgtcctggactgt
atactctacctgctgctggctgtctacctggaccaggtcctaccaggtgagtttggcatg
cggcgctccctggtatacttcatgaagccatcctattggtccaggcgcagtaagcgctac
gtcgaggtgagctctgcgtacgagacggaggtgaacggggccacaggagtgaatgagtct
gtggagcccgtctctccggaattcagggggaaagaggccatccgcattaacaacatccgc
aaggtgtacaaagagaaggacagcatcgtggaagctctgaggggcttgacctttgacatc
tatgaaggtcagatcacagccctcctgggccacagcggagcagggaagtccactctgatg
aacatcctgtgtgggatctgtcctccgactgacggccacgcctccatctatggctcccct
gtggcagagatcgctgagggggcagagatgaggcagctggtgggcatctgccctcagttc
aacatcatctttgacgtgctcactgtagaagagcacctgaggatatttgctgccattaaa
gggattctgccctctgacattgacaatgaggtgtccaaggtgctgaaggatctagacctg
gagaagatcatggacgcccaggctaagaacctgagtggaggccagaagaggaaattgtct
gtgggcatagccatcctgggagaccccaagatcctgctcctggatgagcctactgctggt
atggacccctgttccagacaccaggtgtggtctctgctgaagagtcgcagagcaggcaga
gtcacggtgctcagcacacattacatggacgaggcagacatactcgctgaccgcaaagct
gtgatctctcagggccaacttaagtgtgttggttcttccctatatctcaagaccaagtgt
ggagtaggataccacctcagaatgtctattggtggacggtgtgaggtggatggtgtcaca
tcattggtcaagcaccacgtccccaaggcgcagttgtcacggcaacaagaggctgagctg
acattcaccctccctttcgaaagcatggacaccttttcaggattgttctcagaactagac
tgcaggccagacctgggcatcatcaactacggggtgtccatgacaacgctggaggatgtg
tttcttcgtctggaggctgaggctgaggtggaccaggctgactacagtgtgttcaaccag
gagcaggttgaggatgagggtgatgcatcctctctggacgacactgaccaaagactactg
accttctctgacagcaagccagaggcggtccagggccatgctctgtggagacagcagttc
agcaccgtggcctggctacacatgctcaacatgcagagagagaggaaggcctttgtctac
actctggcattgttcctggtcttcctagctgctgtgctagtattgtctctggctacgggg
aacatccagatccacgctccagaacggcagtttctccccatctacctgctgagaccgaac
caggctccccggaaatacaccaccagtctactggtccagaactcatcaggctcggatatc
tccgacttcatccgtaacctggaatctcaggacatcaaggtggagatgatgaagaacaca
gactacatgtcctgtgctcctcacagtgcagccatcaacgtcaccggatccaacaagggt
ttcagatacagtgtagcattcaacagtactaccgtccactctttgcccatgacagtcaac
gtcctcagtaacgccatcctacgaggtctaaacggcacacaacgcatccacacctggacc
aagcccttcgactatcaaattcccgacgccacgtcatatgctctggtctacattgaggct
atcatactggggatgctagctgcaggcatgcctgcctacttcgccatggaccacacccga
gacagagagataaagtgccgttcaacgctgcgtatctctggcctggtcccatctgcgtac
tggtgtggtcaggctgcagtggacatccccttctactacctcatactgaccaccatgacc
agcatcctcttctccttccatactgccaacctgcttacctctagcaacgtcaccgcagtg
atcctgtgtctgataggttttggtccagctatgatcctgttcgcctatgtggtgtctttc
atgttcacacgcgtccagagtaacagagacttcttctctgtggtctccatgatggtgtgt
gtggtgtctgcctccatcgtccagctgtcatttgtgaacgacaaccccgggctgacgagg
atcctccacaatacactatgtttcttcaaccctctctaccccttaatgggctgccttaat
tctatcaccaaggccaccttcctgccctccctctatgaagaggacttcctctggaagaac
ctgctcatagctgtcctatctccctatctgcagtgcatcctgctgctgttcatgctgcgc
tggttggagatccgctatggagggaggaccatgaagaatgaccagttctgcaggatctct
tccaatactaaggctaaagtggagcgtaacccagaggaggggatcaacgaggatgaagat
gttcagatggaaaaggctcgggtgaaggaggccctcacctgccagtgctgtgaggagaaa
ccagtagtggtggtgagtaacttgaggaagcagtttaaatgtccaagggaaggaatctct
ctcaaaaagaggaggacggtagccaccaagaacatctccttctgtgtacgcaaaggtgag
gtgcttggactgctggggcccaacggagcagggaaaagcaccatcatgcatatgttgtct
ggagacacagtcccaaccgctggacaggtcctgatgggggactacagtacagagttccgt
ccagtagacaaccccctggagcatataggctactgtccccaggtcagccctttgtggccc
cgcatcaccctggaggaacacctggagatctacgctgccatcaagggcctccgcggacag
gacgtccctggcatcatcacacgtgtggtgaatgctctggagctgaagggccacctccac
aagcaggccaaaaacctctcagctgggatcaagaggaagttgtgctttgctctcagcatg
ttggggaaccctcagatagttctgttggacgagccttctacagggatggaccccaagtcc
aaacaacgcatgtggagggctatccgggcagcgtttaagaaccgccagcgtggggccatt
ctgaccactcactacatggaggaggctgaggctgtgtgtgaccgcgtggccatcatggtg
tcagggcagctcaggtgtattgggtctatccagcacctgaaggggaagtatgggcgtggc
tacagcctggaattgaagctgagagaggagctgacggggctccaacaagtggccctgctc
cacaaggagatccgtcgaatcttccctcatgctgcaagacaggagagctttgccaccctg
atggtttacaagatccccatggaggatgtcaagtcactggccaagtccttctctcagcta
gagagtgctaagcaagccttcaactttgaagagtacaacttttcacaatcaaccttagag
caggtcttcatggagtttgctaaggagcaggagaacgaggaggaagaggtgggttccctc
agcaccacgttccagtggcagcggctccgccaggacggccctgtgcctgtcaaccacaca
gacagcattgtgcaccagctctga
DBGET
integrated database retrieval system
