Oncorhynchus tshawytscha (Chinook salmon): 112257691
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Entry
112257691 CDS
T05605
Name
(RefSeq) nuclear pore glycoprotein p62 isoform X1
KO
K14306
nuclear pore complex protein Nup62
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112257691
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112257691
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
112257691
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Nsp1_C
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
112257691
NCBI-ProteinID:
XP_024287234
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Position
LG09:complement(28077850..28087302)
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AA seq
583 aa
AA seq
DB search
MSGGFNFGQASSTGFSFGAPKTTAATAPATGFGMPSAAAPGGGFSFGTPSTPQAPVAAPQ
SSGLFAMPIQGSTNPTGGFSFGTPAQSSTPAGGGFSFGTPIAKLNLGTPVASQPALTGLT
MGMATPSSGTGFGLGGGLATQTTAAPAGGGFSFGAAGGLGAPVAQTQPQTQPAAAGGLSL
GTPAEATQIMGGGFSFGAAKVQATTAPAPTVTVGGGFSFGNSTPASLSLGTQPTSLTLNS
VASTAVPTTTQVGGFAFGVKPSATPAPTATAPATQASLGSSLFAVPASTAAPATAAITGF
LGAAPTSAAPAATSTAGSTLGFMLKPLGAVTATTTAPVGTVFVLAAPTTTTGFSLAMKSA
GAIGIGVTAPITGAATTIATVTASAPPVMSYIQLEGLINKWSLELEDQERHFLQQATQVN
AWDRTLVENGEKITSLHREMEKVKLDQRRLDQELDFILSQQKELEDLLSPLEESVKEQSG
TIYMQNADEERERTYKLAENVDAQLKRMSQDLKEIIEHLNTSSGPADNSDPLQQICKILN
AHMDSLQWIDQNSVLLQRRVEDVSKLCDNRRKEQEKTFRITFH
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgagtggaggattcaactttggacaagcgtccagtactggattcagctttggagctccc
aaaaccacagctgcaactgccccagccacaggctttgggatgcctagtgctgcagctcca
ggtggtggcttctctttcggaacccccagcactccccaggccccagtagctgccccccag
agctctgggctgtttgctatgcccatccagggtagcacaaacccaactggagggttcagt
tttgggacccctgcacagagcagtactcctgcaggaggaggcttctcttttgggactccc
attgctaaactcaatctgggtacaccagtcgcctctcaacctgcactgactgggctaact
atggggatggcaaccccctcctctgggacaggctttggacttggtgggggtctcgccaca
caaaccactgctgcccctgcaggaggggggttcagctttggggccgcaggggggcttgga
gcccctgttgcccaaactcagccccagacccaacctgctgcagctggtggactctcttta
ggaactcctgctgaagccacccaaattatgggaggtgggtttagttttggtgcagccaag
gtccaggcaaccacagccccagcccctactgtaactgtaggagggggcttctcatttgga
aacagcacacctgccagcctctccctggggacccagcccacaagtctgactctgaactct
gtggcctcaacagctgtaccaaccacaacccaggttggaggattcgcttttggtgtcaaa
ccttctgctactccagccccgactgcaactgccccggctacccaagcctcattaggttct
tctctttttgctgtaccagcatcaacagcagctcctgctacagcagcaatcacaggattt
ttgggcgctgcccctacctccgctgccccggctgccacctcaacagcgggaagtaccctg
ggcttcatgctcaaacccctgggagcagtcactgccacaactactgccccagttggcaca
gtgtttgttttagctgcccctaccacaaccacaggtttctcactggctatgaaatctgcg
ggcgccattggtattggtgtaacggcccccatcactggcgcagccacaaccattgctact
gttacagcaagtgctcctccagtgatgtcatatatccaactagagggtctcattaacaag
tggagtcttgagctggaggaccaggagaggcatttcttacagcaagccacccaggtcaac
gcctgggaccgcacgctggtggagaacggagagaagatcacatcactgcacagggagatg
gagaaagtgaaattggaccaaagaaggctggaccaggaactggacttcatcctgtcacaa
cagaaggagctggaggacctgctgtccccactggaggagtctgtcaaagaacagagtgga
accatctacatgcagaacgcagacgaggaacgcgagcggacgtacaagcttgcagagaac
gtggacgcccagctgaagaggatgtcccaagatctaaaggagatcattgaacacctgaat
acatccagcgggccagctgataacagtgacccgcttcagcagatctgtaaaattctcaat
gcccacatggactctcttcaatggattgaccagaactcggtgcttctacagagaagggtg
gaggatgtgtccaaactctgtgacaaccgacgcaaagagcaggagaagacttttcgcata
acatttcattga
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