Oncorhynchus tshawytscha (Chinook salmon): 112257742
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Entry
112257742 CDS
T05605
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
otw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112257742
09122 Translation
03013 Nucleocytoplasmic transport
112257742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112257742
03041 Spliceosome [BR:
otw03041
]
112257742
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
112257742
Spliceosome [BR:
otw03041
]
Complex C
Other components
EJC/TREX
112257742
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
112257742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
112257742
NCBI-ProteinID:
XP_024287317
LinkDB
All DBs
Position
LG09:29366982..29437966
Genome browser
AA seq
1570 aa
AA seq
DB search
MATRIIPADWIKNWEKSGKHEFVQLCKNLAYKTNHDSTIKDIQAALYELCWHVIQGNFKL
DLSASVLCDMMDLRDDMPSILADVFSILDIETSSLEEKNKRDHYTQLVGACLFFVPDAIL
KERLDPETLESLGLIKQAHQFNQKIVKIKTKLFYKQQKFNLLREENEGYAKLITELGQDL
SGNITSHIVLESIKSLIGCFNLDPNRVLDIILEVYECRSDQDEFFLPLIKSYMCEPLTLC
HILGFKFKFNQEPNEETPTSLYHIAAALLHHNLIELEDIYVHLMPLDASIVEEHKREITE
AKQIARKLTMVVVPSEKTEDKEREKEEEKNDKAPDNQKLGLLEALLRIGDWHHAQSIMDQ
MPSFYATSHKAIALALCQLLHLTVEPLYRRAGVPKGAKGCLLRPLKNKRAPRPAESFEDL
RRDVFSMLCYLGPHLSHDPILFAKIVRLGKGFMKEYQSEGRNDHIKDKMDTLLSCFLSIA
DQVLLPSLSLMECNACMSEELWGLFKLFPYQHRYRLYGQWKNETYTSHPLLVKVKAQTVD
RAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQWYDNLIGPVVDSLKYLTSL
NYDVMAYCIIEALANPEKEKMKHDDTTISSWLQSLASLCGAVFRKYPIELAGLLQYVTNT
LKAGKSFDLLILKEVVQKMAGIEITDEMTSEQMEAMTGGEQLKAEGGYFGQIRNTKKSSQ
RLKDALLDHDLALPLCLLMAQQRNGVVFLEGGEKHLKLVGKLYDQCHDTLVQFGGFLASN
LSTEDYIKRVPSIDILCNQFHTPHDAAFFLSRPMYGHQILSKYDELKKAEKSNRQQQKVH
KYVAACELVMSPVHEAVVSLHPPRVWDDLRPQFYATFWSLTMYDLAVPHNAYDREVKKLQ
LQVQVIEENPDVPMNKKKKEKERCTALQEKLQEEEKKQLEHVQRVLHRLKLEKDNWLLAK
STKNETITKFLQLCLFPRCIFSAIDAVYCARFVELVHQQKTPNFCTLLCYDRVFSDIIYT
VASCTENESRRYGRFLCCMLETVTRWHSDRAVYEKECGNYPGFLTIFRATGFDGGNKADQ
LDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPCYPKVLNLGQALECR
VHKICLEEKEKRPDLYALAMGYSGQLKGRKAHMVPENEFHHKEQPVRSATPVSQQNGPGT
TAKPATNASKTEEGVSEDADRAKDKSQGAAKPANKANSTAAKVTTSNGNGAPNSTKSIKE
RDDKEKSGKEKKEKKEKTPGSTLETKGESRREKQRDERGAGGKEERAPREGKEKTPKADR
DKQKAEEKSNKEDNKAKTGNGEPKEPSRERDTGAKESKSKEKGGDRSAMSGSLKSPVPRL
ESAESERDHKRRKLETHSSPSHSSSVKDNSNEPKDSASKHHINYNSVARSKSRERETDKK
ESENTRGRSKEKKTDDKDRKDRKRDHMTTDREMSLESKRRKDENGTNSSNKHSKSASPCS
GSPVSADKEKTKRSKSSSKEKGESAKPERNSSGGKKESRHDKEKSDKKEKRDSSGGKDEK
KHHKSSDKHR
NT seq
4713 nt
NT seq
+upstream
nt +downstream
nt
atggcgacacgtatcatccctgctgattggatcaaaaactgggaaaaatctggaaaacac
gagtttgtacaactatgtaagaatcttgcatacaaaacaaatcatgacagcacaataaaa
gatatacaggcagctttgtatgaactctgctggcatgtcatacaggggaacttcaagctg
gacctttctgctagcgtcctctgtgacatgatggatctgcgggatgacatgccatccatt
ttagcagatgttttcagtatactagacatagagaccagctctttagaggaaaaaaacaaa
cgtgaccattacacccaactagtgggagcgtgtctgttctttgtgccagatgccatcctg
aaggagaggctggacccagagaccctggagtccctgggactcataaagcaagctcatcag
ttcaaccagaaaattgttaaaatcaagaccaaactattttacaagcagcagaaattcaac
ttgctgagggaagagaatgagggctatgccaagctgatcactgagctgggtcaagacctt
tcaggcaacatcactagccacatcgtcctagagagcatcaagtctctaataggatgcttc
aacctggaccccaaccgcgttctggacatcatcttggaggtgtacgagtgtcgctctgac
caagacgagttcttcctgcccctcatcaagtcctacatgtgtgaacccctcaccctctgc
cacatcctgggcttcaagttcaagttcaaccaggagccaaatgaggagacccccacgtca
ctctaccacatcgctgccgccctcttgcatcacaaccttatagagctggaggacatctat
gtgcacctgatgccactggatgccagcattgtagaggagcacaagagagaaatcacagag
gccaagcagatcgcccgcaagctcaccatggtggtggttccctccgagaagactgaggac
aaggagagggagaaggaggaagagaagaacgacaaggctcctgataaccagaagctgggt
ctgttggaagcgctgctgaggatcggagactggcaccatgcccaaagcattatggaccag
atgccctccttctacgccacctctcacaaggccattgctctggcgctgtgccagctgctg
catctgactgtggagccactgtaccgcagagccggggtccccaaaggggccaagggatgt
ttgttgaggcccctgaagaacaagcgggcccccaggcctgcagagagctttgaggacctg
cgcagggatgtgttcagcatgctctgctacctggggccccacctctcccatgaccccatc
ctctttgccaagatagtacgcctgggcaagggctttatgaaagagtaccaaagtgagggt
agaaatgaccacatcaaggacaaaatggacacattgctgagttgtttcctgagcattgca
gaccaggtgctgctgccctcgctctctctcatggagtgtaacgcctgcatgtcagaggag
ctctggggcctcttcaaactcttcccctaccagcacaggtaccggctatacgggcagtgg
aagaatgagacctacacaagccacccacttttggtcaaggtcaaagctcagactgtggac
agagccaaatacatcatgaagcgattaaccaaagagaatgtgaaaccatctgggcgccag
ataggcaagctgagccatagcaaccccaccatcctctttgactatatcctgtctcagatc
cagtggtatgacaacctcatcggtccagtggtagactcccttaaatacctcacctcactc
aactatgacgtcatggcttactgcataattgaagcgctggcaaatccagagaaagagaag
atgaagcatgacgacactacgatctcctcctggcttcagagcctggccagtctctgtgga
gcggtattcaggaaatacccaattgagttagctggcctcctccagtatgtgaccaatacg
ctgaaagcagggaagagttttgacctgttgattctgaaagaggtggtgcagaagatggcc
gggatcgagatcactgacgagatgacatcagagcagatggaagctatgactggaggggag
cagctcaaagcagagggtggttactttggtcagatccgtaacactaagaagtcgtcccag
cgtctaaaggatgccctgttggaccatgatctggccctgcccctctgtctcctcatggcc
cagcaacgcaacggagtggtctttctggaggggggtgagaaacacctcaaactggtgggc
aagttgtacgaccagtgtcacgacaccctggtgcagtttggtggcttcctggcctccaac
ctgagtactgaggactacatcaagcgtgttccctccattgacatcctctgtaaccagttc
cacacgccccacgatgctgccttcttcctctcacgccccatgtatggacatcaaatcctg
tctaagtatgatgagctgaagaaagctgagaagagcaaccggcagcagcagaaggtccat
aagtacgtggctgcgtgcgagctggtgatgtcgccggtgcacgaggccgtggtgtccctg
cacccaccccgtgtctgggacgacctccgaccccagttctacgccaccttctggtcgctg
accatgtacgacctggccgtaccacacaacgcctacgaccgcgaggtgaagaagctccag
ctccaggtgcaggtcatcgaggagaaccctgatgtgccaatgaacaagaagaagaaggag
aaggagcgctgcacggccctacaggagaagctgcaggaggaggagaagaagcagctggag
cacgtccagagggtcctgcaccgcctcaaactggagaaggacaactggctcctcgctaaa
tccaccaagaatgagaccatcactaagtttctgcagctgtgtctgtttcctcgctgtatc
ttctctgccatcgacgctgtgtactgcgcccgctttgtggagctggtgcaccagcagaag
acacccaacttctgcaccctgctctgctatgaccgggtgttctctgacatcatctacacg
gtggccagctgcacggagaacgagtcgcgacgctacggccgcttcttgtgctgcatgttg
gagacggtgacccgttggcacagtgaccgagctgtctacgagaaggagtgtggtaactac
ccaggcttcctgaccattttcagagccacaggcttcgacggagggaacaaagcagaccag
ctggactatgagaacttcagacatgtagtgcacaaatggcactacaagctgactaaagca
tcagtccactgcttggagacgggggaatacacccacatccggaacatcctgatcgtgctg
accaaaatcctgccctgctaccccaaagtgctgaacctgggccaggcactcgagtgccgt
gtccacaagatctgtctggaggagaaggagaagaggccagacctctatgccttggccatg
ggctattctggccagttgaaaggcaggaaggcgcacatggttcctgagaatgagttccac
cacaaggagcagccggtgaggagcgccactcctgtcagccagcaaaacggccctggcacc
acggccaagcctgccaccaacgccagcaagacggaggagggcgtcagtgaggacgccgat
cgagccaaggataaatctcagggtgcggcgaagccagcgaacaaagccaacagcacagcg
gccaaagtgaccaccagcaacgggaatggggctcctaacagcaccaaaagcatcaaagag
agggatgacaaagaaaagagcgggaaggagaaaaaagagaaaaaggagaagactccaggc
agcactctagagacgaagggggagagccggcgggagaagcagagagacgagagaggagca
ggcggcaaggaggagcgggcgccacgcgagggtaaggagaagacgcccaaggcagaccgg
gacaagcagaaggcggaagagaagagcaacaaagaggacaacaaggccaagaccggcaac
ggagagcccaaggagccatccagggaacgcgacaccggagccaaggaatctaagagcaaa
gagaagggaggtgacaggagtgccatgtccggatccctcaagtctccagttccccgattg
gagtctgctgaatctgagagggatcacaaaaggcgaaaactggagacccactcttcacca
tcccattcctcctctgttaaggacaatagcaacgaacccaaggactctgcatccaagcac
cacatcaactacaattcggtcgcgcggtccaagagcagagagagggagacggacaagaaa
gagtcagagaatacccggggccgttccaaagagaagaagaccgacgacaaagaccggaag
gacaggaagagagatcatatgaccactgaccgtgagatgagcctagaatccaaacgcaga
aaagatgaaaatggaaccaattcctccaacaaacacagcaagagcgccagtccctgctca
ggctccccagtctcggctgacaaagagaagaccaagaggtcaaagtcctctagcaaggag
aagggagagtctgctaaacctgagagaaactcctccgggggcaagaaggagtctaggcac
gacaaagaaaaatctgacaagaaggagaagagggacagcagtggtggaaaggatgagaaa
aaacatcataagtcttctgacaagcacagataa
DBGET
integrated database retrieval system
