Oncorhynchus tshawytscha (Chinook salmon): 112257753
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Entry
112257753 CDS
T05605
Name
(RefSeq) transcription initiation factor TFIID subunit 1 isoform X1
KO
K03125
transcription initiation factor TFIID subunit 1 [EC:
2.3.1.48
2.7.11.1
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112257753
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
otw01001
]
112257753
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112257753
03036 Chromosome and associated proteins [BR:
otw03036
]
112257753
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.48 histone acetyltransferase
112257753
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
112257753
Protein kinases [BR:
otw01001
]
Serine/threonine kinases: Other
TAF1 family
112257753
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
112257753
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
HATs (histone acetyltransferases)
112257753
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3591
Bromodomain
TBP-binding
zf-CCHC_6
Cac1_C
Motif
Other DBs
NCBI-GeneID:
112257753
NCBI-ProteinID:
XP_024287341
LinkDB
All DBs
Position
LG09:29695872..29714478
Genome browser
AA seq
1942 aa
AA seq
DB search
MSDSDSDEDQDRPFSLTGFLFGNINEDGQLEGDSVLDTESKKHLAGLGSLGLGNLITEIT
ASEEDDPDEDGDTGGTNAEGWVKNDADAVDYSDINEVAEDETKKYRQAMGSLQPTRRTDD
EDDYDADCEDIDAKLMPPPPPPSLPTPGGKKEDSSPTAASVGDEGDGIILPSIIAPSSLV
DKVDFSSSSDSESETDRPSTGSGSGGPPTCLSLPLAGIMQKDAAKALPGVTQLFPEFRPG
RVLRFLRLFGPGKNMPSVWRSARRKRKRKHRDPQPETPPPEGAEPMEQQGPEKKSGWDYE
YAPPPPPEQCLSDDEITMMAPVESKFSQTAGDGDKVTESRPKVAEWRYGPAQLWYDMMGV
PEDGSGFHYGFKLKEEEEDEQEKQERPEPPPPFSQPPKEEGSGDEKDEQALENELFLMVT
QLQWEDDIIWNGEDVKHKGTKTQRASLAGWLPSSMTRNANAYNAQQGLCRSNSQLVPPTP
PPMPKAPSIGSGSKRDKHHHDHYASHEDDAPWFSIFPIDNEELVYGRWEDNIIWDDQAMD
RMLSPPVLTLDPNDENIILEIPDEKESERTSHSPSKENKKESALKKSRILLGKTGVIKEE
PQQNMSQPEVKDPWNLSNDEFYYPKQQGLRGTFGGNIIQHSISAVELRQPFFPTHMGPMK
LRGFHRPSLKKYSFGTLSQPGPHAAQPLLKQIKKKAKMREQERQASGGGDMFFMRTAQDL
TGKDGDLILAEYSEEYPPLIMQVGMATKIKNYYKRKPGKDPGAPDCKYGETVYCHTSPFL
GSLHPGQLLPAFENNLFRAPIYLHKMPETDFLVLRTRQGYFIRELVDIFVVGQQCPLYEV
PGPNSKRANTHIRDFLQVFIYRLFWKSKDRPRRIRMEDIKKAFPSHSESSIRKRLKLCAD
FKRTGMDSNWWVLKPDFRLPTEEEIRAMVSPEQCCAYYSMLVAEQRLKDAGYGEKSFFAP
EEENEEDFQMKIDDEVRTAPWNTTRAFIAAMKGKCLLEVMGVADPTGCGEGFSYVKVPNK
PTQQKAQDDREPQPAKKTVTGTDADLRRLSLKNAKQLLRKFGVPEEEIKKLSRWEVIDVV
RTMSTEQARSGEGPMSKFARGSRFSVAEHQERYKEECQRIFDLQNKVLESTEVLSTDTDS
SSAEDSDFEEMGKNIENMLQNKKTSSQLSREREEQERKELQRMLMGEESDHKGRKARKGF
SSALSTGSHKDDDTSSVTSLNSSATGRRLKIYRTFRDEDGKEYVRCETVRKPSVIDAYTR
IRTTKDDDFIKKFALFDEQHREEMRKERRRIQEQLRRLKRNQEKDRFKSPPEKKAKKIKE
RPDLKVKLKCGACGAIGHMRTNKFCPLYYQTNAPPSNPVAMTEEQEEELEKTVIHNDNEE
LIKVEGTKIVLGKQLIESADEVRRKSLVLKFPKQQLPPKKKRRVGNNVHCDYLNRPHKSI
HRRRTDPMVTLSSVLESIINDMRDHPNTYPFHTPVNAKVVKDYYKIIPRPMDLQTLRENV
RKRVYPSREEFRENVELIVKNSATYNGAKHPITQVAQTMLDLCDEKLKEKEDRLVRLEKA
INPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVQPMDLENVR
KNISKHKYQNRDVFLFDVSLVHTNSVKYNGPDSPYTNTALEIVNVCKQTLAEYDEHLTQL
EKDISTAKEAALDAADLDSLDPMTPGTYTPQGRHRRLGEEESDVDIEGFEEEDDDGKPKT
PAPAEDGEGDLEDEEDEEEMLLLPPRRRLQGHEDDDYDEDEGSSRPAQASVLYQDLLMSD
GEDDASEEEGDNPFSSIHLSESGSDSDREVEVRPPPPPRPHHETARMGLEQDESMMSYGE
ELPDETHLEDSNVSYGSYEGQTHTQTSSMGNGEGYGISEEEEEEAARRRGPSVLSQVQLS
EDEEDSEEFRSIGGESDLDSDN
NT seq
5829 nt
NT seq
+upstream
nt +downstream
nt
atgtcggactcagacagtgatgaagaccaagaccgccccttctctctcactggctttctc
ttcgggaacatcaatgaagatggtcagctggagggagacagtgtgctggacactgagtcc
aagaagcacctggctggcctgggctctctgggcctgggcaacctcatcacagagatcaca
gccagtgaggaggatgatcctgacgaggatggagacacaggtggcacaaatgcagaggga
tgggtgaagaacgatgccgatgcagttgattattctgacatcaacgaggtggctgaagat
gagactaagaagtatcgtcaggccatgggcagcctgcagcctaccaggagaacagatgat
gaggatgactatgatgcggattgtgaggatattgatgccaagcttatgccccctccacct
cctccaagtctccccacgcctggtggcaagaaagaggattcctctcctacggctgcaagt
gttggggatgaaggagacgggatcatcctgccctccatcatcgctccctcctctctagta
gacaaagtggacttcagcagctcctcagattctgagtcagagacggaccggccctccaca
ggctctgggtctgggggtcctccaacctgcctcagcctgcccctggctggcatcatgcag
aaggatgctgccaaagccctgcctggcgtcacacagctcttcccagagttcaggcctgga
agggtgctgcggttccttcgactgtttggccctgggaagaacatgccgtcggtgtggcgg
agtgcacgacgaaagaggaagaggaagcaccgcgacccccagccagagacacccccacca
gagggcgctgagcccatggagcagcagggaccagagaagaagtctggctgggactatgaa
tacgccccacctccacccccagaacagtgcctgtctgatgatgagatcacaatgatggcc
ccagtagagtccaagttctctcagaccgctggagacggggacaaggtgacagagtccagg
cctaaggtggcagagtggcgctatggtccagcccagctctggtacgacatgatgggggtc
cctgaggatggaagtggtttccactatggcttcaaactgaaggaggaggaggaagatgag
caggagaagcaggagaggccagaaccaccaccaccattttcacaacctcccaaagaggag
ggaagtggtgacgaaaaggatgaacaggccctggagaacgagctctttctgatggtcacc
cagcttcagtgggaggacgacatcatctggaacggagaggacgtgaaacacaaaggcact
aagacccagcgagccagtctggcagggtggctgccttccagcatgacgcgtaatgccaat
gcctacaacgcacagcagggtctgtgtaggagtaactctcagctggtgccccccactcct
ccacctatgcccaaagccccctccatcggctctggctccaagagagacaaacaccaccat
gaccattatgcctctcatgaagatgacgccccctggttctccatcttccccattgacaat
gaggagctggtgtacggccgctgggaagacaacatcatctgggacgaccaggccatggac
cgcatgctctcaccccctgtcctcaccctggaccccaacgatgagaacatcattttagaa
atcccagatgagaaggagtctgagcgtacgtcccactccccgtccaaggagaacaagaag
gagtcggcactgaagaagagtcgcatcctgctggggaagactggggtcataaaggaggag
cctcaacagaacatgtcccagcctgaggtgaaggacccatggaacctgtccaatgatgag
ttctattaccccaagcagcagggcctgaggggcaccttcggtggcaacatcattcagcac
tccatctctgcagtggagctgaggcagccgttcttccctactcacatgggacccatgaag
ctgcgtgggttccaccgaccctctctgaagaagtactcgttcgggacgttgtcccagcca
ggtccccacgcagcacagcccctactcaaacagatcaagaagaaggccaagatgcgagag
caggaacgccaggcttctggtggcggtgacatgttcttcatgcggacagctcaggacctg
acagggaaagacggagacctgattctggcagagtacagcgaggaataccctccgctcatc
atgcaagtcggcatggcaaccaagatcaagaactactacaagagaaaaccaggcaaggac
cctggagctcctgactgtaagtacggagagacggtgtactgccacacctctcccttcctg
ggctccctgcaccccgggcagctgctcccggcttttgagaacaaccttttccgtgccccc
atctacctccacaagatgccagagacagatttcctggtgctgcgtacacggcagggctac
ttcatcagagagctggtggacatatttgtggttggacagcagtgtccgctctatgaggtc
cctggacccaactccaaacgagccaacacccatatcagagatttcctgcaggtgtttatc
tatcgactgttctggaagagtaaagatcgccctaggagaatccgtatggaggacataaag
aaagccttcccctcacattcagaaagcagcatccgcaaacgcctaaaactctgtgctgac
ttcaagcgtacagggatggactctaactggtgggtgctgaagcctgacttcaggctgcct
actgaggaggagatcagggccatggtgtctccagagcagtgctgtgcctactacagcatg
ctggtggcagagcagagactgaaggatgctggatatggtgaaaagtccttctttgctcca
gaggaagagaacgaggaagacttccagatgaagattgatgatgaggtccgcacggcccct
tggaacacgactcgagccttcatcgctgccatgaaggggaagtgtctgctggaggtcatg
ggggtggccgaccccacagggtgtggagagggattctcctacgtcaaagtgcccaacaag
cccactcaacaaaaggcccaggatgaccgggagccacaacccgctaagaagactgtgacg
gggacagacgctgatctgagaagactatcactaaaaaatgccaagcagctgctgcgcaag
tttggtgttccagaggaggagataaagaagctgtctcgttgggaggtgattgacgtggtg
aggaccatgtctacagagcaggcacgctctggcgaggggcccatgagcaaatttgcccgc
gggtcccgcttctctgtagccgaacaccaggagcgctacaaggaggagtgccagaggatc
tttgacttgcaaaacaaagtattggagtccacagaggtcttgtccacagacacagacagc
agctcagcggaggacagtgactttgaggagatggggaagaacattgagaacatgctgcag
aacaagaagaccagctcccaactgtccagagagagggaggagcaggagaggaaggagctg
cagaggatgctgatgggagaggagagcgaccacaagggacgcaaagcacgcaagggcttc
tctagtgctttgtccacgggctcccataaagatgacgacacgtcctcggtcaccagcctg
aactcgtccgctacgggacggcgcctcaaaatctaccgcaccttcagagacgaggacggc
aaggagtatgtccgctgtgagacggtccgcaaaccctccgtcatagacgcctacaccaga
atcagaaccaccaaggacgacgacttcataaagaagtttgcgctgtttgacgagcaacat
agagaggagatgaggaaggagcgccggcggatccaggagcagctgaggaggctgaagagg
aaccaggagaaggacaggttcaagagcccccctgagaagaaggccaagaagatcaaggag
aggccagacctcaaggtaaaactgaagtgcggagcttgcggtgccatcgggcacatgcga
accaacaagttctgcccactgtactaccagaccaatgctccaccctccaatccggttgcc
atgacggaggagcaggaggaggagctggagaagactgtcatccacaatgacaacgaggaa
ctcattaaagtggagggaaccaagatcgtcctgggcaagcagctcatcgagagtgctgat
gaggtgcgcaggaagtccctggtgctgaagttccccaaacagcagcttccccccaagaag
aagagacgtgttgggaacaatgtacactgtgactacctaaataggccccacaaatccatc
caccgcagacgcactgaccccatggtcaccctgtcctcagtcctggagagtattatcaat
gacatgcgggatcaccccaatacataccccttccacacaccagtcaatgccaaggtggtg
aaggactactataagatcatccctcgtcccatggatctgcagacgctacgggagaatgtg
cgcaagcgtgtgtacccctcccgggaagagttcagagagaacgtggagctcattgtcaag
aacagcgcgacatacaacggtgccaagcatccaataacccaggtggctcagactatgctg
gacctttgtgatgagaaactgaaagagaaggaagacaggctggtgagactggagaaagcc
attaaccccctgctggacgatgatgaccaggtggccttttccttcatcctggacaacatc
gtcactcagaagatgatggccgtgcctgactcttggccgttccaccatccagtcaacaag
aagtttgttccagattactacaaagtgatagtccaacccatggacctagagaatgttcgc
aagaacatatccaaacacaagtaccagaaccgggatgtgttcctgtttgatgtcagcctg
gtccacaccaacagtgtcaagtacaacggaccagacagcccttacaccaatacggccctg
gagatagtcaacgtatgcaagcagaccctggcagagtatgatgagcacctgacccagctg
gagaaggacatctccacagctaaagaggcagctctggatgcagcagacctggatagcctg
gaccccatgactcctggaacctacacaccacagggtcgtcatagaaggctaggagaggag
gagtcggacgtggacatcgagggctttgaggaggaggatgacgacgggaagcccaagaca
ccagctcctgcagaggatggtgagggagacctggaggatgaggaggatgaagaggagatg
ctgctgctgccgccccgcagaaggctgcagggccacgaggatgatgattatgacgaggat
gaaggctccagtcggccagcccaggccagcgtgctgtaccaggacctgctcatgtcagac
ggagaggatgacgccagcgaagaggagggagacaacccgttctcctctatccacctgtca
gagagtggcagtgactcagacagagaggtcgaggtgcgtcccccgccccctcccagaccc
caccatgagacggcccgcatgggcctggagcaggacgagagcatgatgtcatacggggaa
gagttgccggatgagacccacctggaggacagtaatgtcagttatgggagttatgagggt
cagacccacacccagacctccagcatgggcaatggagagggctacggcataagtgaggaa
gaggaggaagaggcagctcggaggagaggtcccagtgtgttgtcccaggtgcagctgagt
gaggatgaggaggacagtgaagagttcaggtccatcggaggagaaagtgacttagactca
gacaactag
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integrated database retrieval system
