Oncorhynchus tshawytscha (Chinook salmon): 112257850
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Entry
112257850 CDS
T05605
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04142
Lysosome
otw04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112257850
04142 Lysosome
112257850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112257850
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112257850
Membrane trafficking [BR:
otw04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
112257850
Exosome [BR:
otw04147
]
Exosomal proteins
Proteins found in most exosomes
112257850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
Coatomer_WDAD
Motif
Other DBs
NCBI-GeneID:
112257850
NCBI-ProteinID:
XP_042182761
LinkDB
All DBs
Position
LG09:complement(34390563..34455412)
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AA seq
1680 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDNAVYHWSMEGDSQPIKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPPTG
NQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAG
AEELFARKFNNLFAGGNYSEAAKVAANAPKGILRTPDTIRKFQSVPAQPGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVY
LRANVPNKVIQCFAETGQFPKIVLYAKKVGYTPDWIFLLRNVMRISPEQGLQFSQMLVQD
EEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAI
LGNQMFTNYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTNSLTELFESFKSFEGLFYFLGSIV
NFSQDAEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKSLILVVRGQ
FSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPY
YDSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRRDPDLWASV
LLETNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFKKFDVNT
SAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYME
VVQAADQSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNAIITMM
NHPTDAWKEGQFKDIITKVANVELYYKATQFYLEFKPLLLNDLLIVLSPRLDHSRAVNFF
SKVKQLPLVKPYLRSVQNHNNKSVNEALSNLFITEEDYQALRTSIDAYDNFDNISLAQRL
EKHELMEFRRIAAYLFKGNNRWKQSVELCKKDRLYKDAMQYASESKDTELAEELLGWFLM
EDKKECFAACLFTCYDLLRPDVVLETAWKHNIMDFSMPYFIQVMREYLSKVDKLETSESL
RKEEEQATETQPIVYGTPQLMLTAGPSVPVPPQQAYGYGYQAPAGYPQAPQAQPGFGYSM
NT seq
5043 nt
NT seq
+upstream
nt +downstream
nt
atggctcagattctgcctatccgctttcaggagcacctgcagctccaaaacttggggatc
aacccagccaacatcgggttcagcaccctgacgatggagtctgataagttcatctgtatc
cgagagaaggtcggcgagcaagcgcaggtggtgatcatagacatggccgaccccaacacg
cccatccgcaggcctatctctgcagacagcgccatcatgaaccccgcctccaaagtcatc
gcacttaaagacgctgccaaaacccttcagatctttaacattgagatgaagagcaagatg
aaggcccacaccatgaccgacgacgtcaccttctggaagtggatctccctcaacacagtg
gcacttgtgactgacaatgccgtctaccattggagcatggagggggactcccagccaatc
aaagtctttgaccggcactccagcctggcgggctgtcaaatcatcaactaccgcactgat
gccaagcagaagtggctgctgctcatcggcatctccgcacagcaaaaccgtgtggtgggc
gccatgcagttgtactctgtggacagaaaggtgtcacagcccatcgagggccacgccgcc
ggcttcgcccagttcaaaatggagggcaacacagaggagtccacactgttctgctttgct
gtgagaggacaggccggaggaaagttgcacatcattgaggtgggcaccccacccacaggg
aaccagccttttccaaagaaagcagtggatgtgttcttccctccagaggctcagaatgac
ttccctgtggccatgcagataagctccaagcaggatgtggtgttcctcatcaccaaatat
ggctacatccacctgtacgacctggagactggcacctgcatctacatgaacaggatcagc
ggggagaccatctttgtcacggccccacacgaagccaccgctgggatcatcggggtcaac
aggaaaggacaggtcctgtcggtgtgtgtggaggaggagaatatcatcccctacattacc
aatgtcctccagaacccagacctggccttgcgcatggctgtccgtaacaatctagctggg
gccgaggagctgttcgcacgcaagttcaacaacctgtttgctgggggaaactactctgag
gctgccaaggtggctgccaacgcaccaaagggtatcctgcgtactccagacaccatccgt
aagttccagagtgtgccagcccagccgggccagacctctcccctgctgcagtactttggc
atcctgctggaccagggccagctcaacaagtttgagtccctggagctgtgcaggcccgtc
ctacagcaggggcgcaagcagctgctggagaagtggctcaaagaggacaagctggaatgt
tctgaggagctgggggacctggtgaagtcagtggaccccaccctggctctctccgtctac
ctgagggccaacgtacccaacaaggtcatccagtgctttgctgagaccggacagttcccc
aagatagtcctgtacgccaagaaggtgggctacactccagactggatcttcctgctgagg
aacgtgatgaggatcagtccagaacagggcctgcagttctcacagatgctggtccaggac
gaagagcctctggctgacatcacacagatcgtggatgtgttcatggagtataacctgatc
cagcagtgtacctcattcctgttggacgccctgaagaataacaggccatctgaggggccg
ctgcagacacgcctactggagatgaacctcatgcacgccccacaggttgccgatgctatc
ctgggcaaccagatgttcaccaactacgaccgtgcccacatagcccaactgtgtgagaag
gctggcctgctgcagagggctctggagcactacaccgacctatacgacatcaagcgggcc
gtggtgcacacacacttgctcaacccagagtggctggtgaatttctttggctccctctca
gtggaggactctctagagtgcctgagggccatgttgtctgccaacatccgtcagaacctg
cagatttgtgtccaggtggcctccaagtaccacgagcagctctccaccaactccctcacc
gagctcttcgagtccttcaagagctttgagggtctgttctacttcctgggttccatcgtt
aacttcagccaggatgcagaggtccactttaagtacatccaggctgcctgcaagacggga
cagatcaaagaggtggagaggatctgcagagagagcaactgctatgacccagaacgagtc
aagaacttcctcaaggaggccaagctcaccgaccagctcccgctcatcatcgtgtgtgac
cgctttgactttgtccacgacctggtcctctacctgtaccgcaacaacctgcagaaatac
attgagatctacgtgcagaaagtgaaccccagccgtctgccggtggtgattggagggctt
ctggacgtggactgttctgaggacgtcattaagagtctgatcctggtggtcagaggacag
ttctccactgacgaactggtggccgaggtggaaaagaggaacaggctgaagcttctcctg
ccctggctggaggcccgtatccatgagggctgtgaggagcccgctacccacaatgccctg
gccaagatctacatcgacagtaacaacaaccctgagcgcttcctgcgtgagaacccctac
tacgatagccgcgtggtgggcaagtactgtgagaagagggacccccacctggcctgcgtg
gcctacgagagaggacagtgtgaccaggaactcatcaatgtgtgcaatgagaactccctg
ttcaagagtctgtctcgctacctggtacgtcgcagggacccggacctgtgggccagcgtg
ctgctggagaccaaccccttcagaagaccactcatcgaccaggtggtgcagaccgcccta
tctgagacccaggacccagaggaggtgtcagtcacagtcaaggccttcatgactgcagac
ttgcccaatgaactcattgagctactggagaagatcgtactggataactccgtcttcagt
gaacacagaaacctgcaaaacctgctgatcctgacggccataaaggcggaccgtacccgt
gtgatggagtacatcaaccgcctggataattatgacgccccagacatcgccaacatcgcc
atcagcaacgagctcttcgaggaggcattcgctatcttcaagaagtttgacgtcaacaca
tccgctgtgcaggttctgattgagcacattgggaacctggaccgggcctatgagttcgct
gagcgttgcaacgagccggccgtgtggagccagctggctaaggctcagctgcagaagggc
ctggtcaaggaggccattgactcctacatcaaggctgacgacccctctgcctacatggag
gtggtacaggccgctgaccagagtggtaactgggaggacctcgtgaagttccttcagatg
gcccgtaagaaggcccgggagtcctatgtggagacagagcttatctttgccctggccaag
accaaccgcctggctgagctggaggagttcatcaacggacccaacaacgcccacatccaa
caggtcggcgaccgctgttatgacgagaaaatgtacgatgcggccaagttactgtacaac
aacgtgtccaacttcggccgcctggcgtccaccctggttcacctcggggagtaccaggcg
gcggtagacggggcgcgcaaggccaacagcactaggacctggaaggaggtgtgcttcgct
tgcgtggatgggaaggaattccggctggcccagatgtgtggcctccacatcgtggtgcat
gctgatgaactggaggaactcatcaactactaccaggaccgtgcttactttgaggagctg
atcaccatgctggaggcagccctggggctggagcgggctcacatgggcatgttcactgag
ctggccatcctctactccaaattcaaaccccagaagatgagggagcacctggagctcttc
tggtccagagtcaacattccaaaggttctgcgggcggcagagcaggcccacctgtgggcg
gagctggtgttcctgtacgataagtacgaggagtttgacaatgccatcatcactatgatg
aaccaccccacagacgcctggaaggagggccagttcaaagacattatcaccaaggtggcc
aatgtggagctgtattacaaagcaactcagttctatttggagttcaagccgttgttactg
aatgacctgctcattgtgctgtcccccagactggaccactcccgtgctgtcaacttcttc
agcaaggtgaaacagctgcccctggtcaagccctacctgcgctcagtacagaaccacaac
aacaagtctgtcaatgaagcacttagcaacctcttcatcacagaggaggactatcaggct
ctgaggacgtctatagatgcctatgacaacttcgacaacatctcgctggcccagcgcctg
gagaaacacgagctgatggagttcaggagaatcgctgcgtacctcttcaagggtaacaac
cgctggaaacagagtgtggagctctgcaagaaggacagactctacaaggatgccatgcag
tacgcgtcagagtctaaggacacggagctggctgaggagctgctgggctggttcctgatg
gaggacaagaaggagtgctttgccgcctgccttttcacctgctacgacctgctgaggcca
gacgtggtgctggagactgcctggaagcacaacatcatggacttctccatgccctacttc
atccaggtcatgagagagtacctctccaaggtggacaagctggagacctccgagtcccta
cggaaagaggaggagcaggcgacagagacccaacccatagtctatggcacaccccagctg
atgctgactgctggccccagtgtgcccgtacccccccagcaggcctacggctatggttac
caggcccctgcgggctatccccaggcccctcaggcacagccaggcttcggctacagcatg
tga
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