Oncorhynchus tshawytscha (Chinook salmon): 112257859
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Entry
112257859 CDS
T05605
Symbol
ncor1
Name
(RefSeq) nuclear receptor corepressor 1 isoform X1
KO
K04650
nuclear receptor co-repressor 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
112257859 (ncor1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
otw01009
]
112257859 (ncor1)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112257859 (ncor1)
Protein phosphatases and associated proteins [BR:
otw01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
112257859 (ncor1)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
SMART complex
112257859 (ncor1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GPS2_interact
Myb_DNA-binding
Myb_DNA-bind_6
LOB
Motif
Other DBs
NCBI-GeneID:
112257859
NCBI-ProteinID:
XP_024287519
LinkDB
All DBs
Position
LG09:complement(35259883..35370715)
Genome browser
AA seq
2539 aa
AA seq
DB search
MSSSSGYPPTQGSFSSEQSRYPPHSVQYTFSTTRHQQEFTVPDYRGHLQDQQGRRRPSLL
SEFHPGTERPPERRHGYEQQFHSVTSQQQTDGHEALEAKRPRMETVSEAHFSHNALSGGI
ILPLQSHQVQDSLRASGGEVKKETQFSGMKAESQSPGGLHRVGEEQDGSPSKLSKEELIQ
SMDRVDREIAKVEQQIFKLKKKQQQLEEEAAKPVEPEKPATPPPIPQEHNKHRSIVQIIY
DENRKKAEEAHKIFEGLGPKVELPLYNQPSDTKVYHDNIKTNQVMRKKLILFFKRRNHAR
KQREQNICQRYDQLMEAWEKKVERMENNPRRKAKDSRTREYYERQFPEIRKQREQQERFQ
RVGQRGTGMSATIARSEHEISEIIDGLSEQENNEKQMRQLSVIPPMMYDTEQRRVRFINM
NGLMDDPMKMYKARQFMNVWTEHEKDIFKEKFVQHPKNFGLIASYLERKCVSDCVLYYYL
TKKNQNYKTLVRRNYGRRRGRNQQITRPSQEDKSDDKIEEEKLEKSEKKEDEQNKEEEEK
DEKEDSRDIGKDKDKCDGGEDEDGKEQSTPRGRKTANSQGRRKGRITTRSMANEAASVAT
EEPLPPASAPEPVLPAESPQPLKAEPTTQKAVREPTKTAPGGAPMDPNRGALETAAAANI
ETGETSRWTEEEMEVAKKGLVEHGRNWPAIAKMVGTKSEAQCKNFYFNYKRRHNLDNLLQ
QHKQDIRRARGDRDPSQSESMASADDDENPEDSDGGENSSDTESAPSPSQADPSKVGGES
QRGDIAGGSESQRSDQDQASDRKGQDPSYGELRVKLEKSPEGEARDPDSQEDQERARAAY
EGQVHPKCEPQEVDMKPGGTDVQVKVEPDSAKEKGDNGEREEQREGHHSDNDSSATCSAD
EDVDAEPERQRIFSSMDKPSLLSPPGSVLMSTAKQAHLNMQQFQQGAAAIPPMVSHYSNP
HFSMIRYAHSERQAYGGRQQGESMSCLDQPTRQVGPFSTGGMPMGAPLSGFAMFQHQIKA
VHESAHAEDKQRQDQADPEHSRQPPNCPRFTTHSPTVLDREGKPFPYMPYDMKMALEQEA
QSGRPGSPYRLSPRDMSKASPQPNDPNASRYSVPPVLQPAPNQVVQSLPDGVRVTFSRHS
RPANIPSPPPLIPTSKPTDKPSFIQGGSISQGTPGTYLPSHAVYGGPEVAKSSVGSISLG
LPRQQDPTKPVSYIKQEECSPRCQSEGLLSQMQYEGVVRGGPMDGGISRGNPARGSITQG
TPALSGSSIATDLLKGTNTKLATEELSNPEKAREHLAKGHVIYEGKSGHILSYDAIKNPR
EATCSPRSGHELKRSHDMMEAARGHPGREGAPFEGLIIRALPRESPHGESKERPMMTGSI
MQGTPRTSAEAYEESMKYGKQIKRESPPIRSFEGGIGKGKPYEGVNTIKEMGRSIHEIPR
QEQPGQDPRKTPDMAANSRAAMEGSISQGHPLSQSAIKHNVKSLITSPSRLPHGPTMPQL
EAMERAKYEESKATAEQQQRARHTSVVNSATSVLRSTHQEQGKSQLSPGMYQDADARRTP
VNYSTSSMSRGSPMLGRGQEGTGKPTSHDRKSTMTPNQRDSIPAKSPVSGGDPNHPMASH
SPFDPHHRPMAPGEPRFHLPPHLDPTLFHRAVLDPAAYMFPRQPSPTGYHNTYQLYTMEN
TRQTILNDYITSQQMQVIPRPDVARGLSPREQQQIAISYPPGARGIIDLAQMPPTILLPH
PGGTGTPTMDRITYIPGAQPPFPPRPFNPASISPVCFFVSTGHQAHLAATVAACQERERE
REREREREHREKEREKERERENREREREEYRQRERERVVAAAVANDYMRGGPGQPDRPGS
RGYLRSPSPSMRSQEAQQQRPSIFQGTNSKGVITPLMPSAAAQAGARYSTAADALAALVD
AAASAPQMDVNKGKDSSKHDRDDDMSSSSSSAARRQHEQQQQEADRRSMQSPYMSLPGGK
PHPGYAEGSGGPQGGKDKGPPTKSRIEEELRTRGKTTITAANFIDVIIKRQIASDKDSRE
RGSQSSDSSSSLSSSRYEVPSGGAIEVISPANSPAQAQQEKQQQDDRERADRDRAAQAAT
QAAGMRSFDMIRYRQSAESQQPPSSQADGGYSQSQQVPKTHRVMTLADHISHIITQDFAR
NQDPPQSSTTISSSATTTFQSAQLPVSSSGPGGRAKGHSRYSPENQNQATSHHQRPTPSR
VSPENAPDKPRARPGKSPDRGGRGAVESYEPISPPQSYQDKQQEAREQQQQPQRREADQP
EMRGDSRSPGSVSYLPSFFTKLENTSPMVKSKKQEIFRKLNSSGVGDSDVGNAQPGTEIF
NLPAVTSSSSVNPRNHSFSDPASNLGLEDIIRKALMGNLDERPEEHQGGPQPSCNTPSNE
ARQEANPSPSMGKQKLQSKANSRKSKSPNPGQAYAAAAQAAGGERPSSVSSVHSEGDYHQ
QATGWAWEDRPSSTGSMQFPYNPLTMRMLSSTPPTSMASPSMQAQQPPPGGPLGSQQQRV
WEREPLLSEQYETLSDSDD
NT seq
7620 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtagctcgggctacccccctacccaggggagcttcagcagcgagcagagccgc
tacccaccacactctgtccagtacaccttcagcaccacacgtcaccaacaggagttcacc
gtcccggactaccgaggtcacctgcaggaccagcagggtcggcgaaggccttccttgctt
tctgaattccaccctggaactgagaggcctccagagagacgtcatggctatgagcaacag
ttccacagtgtcacctcccagcagcagaccgacggacatgaggccctggaagccaagcgg
cctcgcatggagaccgtctctgaggcccacttttcccacaatgccctgtccggaggcatc
attctgcccctgcagtcccaccaggtccaggacagcctcagagcctccggaggggaggtc
aagaaggagacccagttcagtggcatgaaagccgagtctcagtccccaggagggctgcac
cgtgtgggggaggagcaggacggctcgccctccaaactgtccaaggaggaactgatccag
agcatggaccgtgtggacagagaaatcgctaaagtggagcagcagatcttcaaactgaag
aagaagcagcaacaactggaggaggaagcggcgaagccagtggagccagaaaagccggcg
acccctccccccataccacaggaacacaacaaacaccgcagcatcgtccagatcatctat
gacgagaacaggaaaaaagctgaagaggcccataagatatttgaaggtcttggtcccaag
gttgaactgcccctttataaccagccgtcggatactaaagtataccatgacaacataaag
actaatcaagtgatgaggaagaagctgattctgtttttcaagagaaggaaccatgctcgt
aaacaaagggaacagaacatctgccagcgctacgaccagctgatggaggcgtgggagaag
aaggtggagcggatggagaacaacccgcgtcgcaaggccaaggatagccgcaccagggag
tactacgagagacagttccccgaaatacgcaagcagagagagcagcaggagcgcttccag
agggttggtcagagaggaactggaatgtctgcgaccatcgccagaagcgagcatgagatt
tctgaaatcatcgacggcctttctgaacaggagaacaacgagaagcagatgagacagctg
tccgtcatcccgcccatgatgtacgacacagagcagaggcgagtcaggttcatcaacatg
aacggcctgatggacgacccaatgaagatgtacaaggctcggcagttcatgaatgtgtgg
accgaacacgagaaagatattttcaaggaaaagtttgttcagcacccaaagaattttggc
ctcattgcttcctatctagagagaaagtgtgtctccgattgtgtcctgtactactacttg
accaagaagaaccagaactacaagacgctggtgagacgtaactacggaagacggcgaggg
agaaaccagcaaataacacgaccctcgcaagaagacaagtcagacgacaaaatcgaagag
gagaaattggagaagtcggagaaaaaagaggacgagcagaataaggaagaggaagagaaa
gatgaaaaggaggactccagggacatcggcaaagacaaagacaagtgtgacggtggggaa
gacgaggacggaaaggagcagagcacgccacgcggcagaaagaccgccaacagccagggc
cggcgcaagggaaggatcaccacgcgctccatggccaacgaggctgcctctgtggcgacc
gaggagccactaccgccggcctccgcccctgagcctgtcctgcctgcagagtctcctcag
cccctcaaagctgagcctactacacagaaggctgttagagagcccaccaaaactgcacca
ggtggagctcccatggaccctaacagaggagcactagaaactgctgccgccgcgaacatt
gaaaccggtgagacttctcgctggaccgaggaggagatggaggttgccaaaaaaggcctt
gtggagcatgggcgtaactggccagccattgccaagatggtgggcaccaagagcgaggct
cagtgcaagaacttctacttcaactacaagagacggcacaacctggacaacctgctccag
caacacaagcaggacatccggcgggcgcggggtgatcgggacccgtctcagagcgagagc
atggcctcagctgacgatgatgaaaacccagaggatagtgacggtggagagaacagctca
gacacagagagtgccccttccccgtcccaggcagacccctccaaggtcggaggagagtcc
cagaggggagacattgctggagggtcagagagccagcggtctgatcaggaccaggccagc
gatagaaagggccaggatccgtcctacggggagctgagggtcaagctggagaagagcccg
gagggagaggccagagaccctgactctcaggaggatcaggagagggcccgggcggcctat
gagggccaggtgcaccccaagtgtgagccccaggaggtggacatgaagccagggggtact
gatgtacaggtgaaggtggagcctgactcggctaaggagaagggggacaatggggagaga
gaggagcagagagaggggcaccactcagacaatgactccagcgccacctgcagtgcagat
gaggatgtggacgctgagcccgagagacagaggattttttctagtatggacaagccttcg
ctgctcagccctcccggctcagtgctgatgtccacggccaagcaggcccacctcaacatg
cagcagttccagcagggcgccgctgccatcccgcccatggtcagtcactatagcaaccca
cacttttctatgatcagatatgcccattcggagaggcaggcatacggaggcaggcaacag
ggtgaaagcatgtcttgtttagaccaacctacccgtcaagtgggtcctttcagcactggc
gggatgcccatgggagcccccctcagtggctttgccatgttccagcaccagatcaaggcg
gtgcacgagtcggcccacgcggaggataaacagagacaggaccaggccgaccccgagcac
agcagacaacctcccaactgcccgcgcttcactacccacagccccactgtactggacagg
gagggtaagcccttcccctacatgccttatgatatgaagatggctctggagcaggaggcc
cagtctggtcggcctggctctccctacaggctctctcccagggacatgagcaaggcctct
cctcagcccaacgaccccaacgcctcccgctacagcgtgcctccagtgctccagccagct
cccaaccaggtggtccagagtctgcctgatggagtccgtgtgactttctccagacacagc
cgacccgccaacattccatctcctcctccactcattccaacctccaaacccacagacaag
ccttcctttatccagggcggctccatctcccagggaactcctggtacgtacctgccatcc
catgctgtctacggtggcccagaggttgcaaagagctcagtgggctccatatccctgggc
ttgcccaggcagcaggaccccaccaaacctgtgtcctacattaagcaggaggagtgttct
ccgcgttgccagtcggagggcctcctttcccagatgcagtatgagggggtagtcagagga
ggcccaatggatgggggtatcagcagaggcaacccagccagaggatcaatcacacagggc
acgccagccctgtctgggtccagcattgcgactgacctgctgaagggcaccaacaccaag
ctggccacggaggaactgagcaacccagagaaggcccgggaacatctggccaagggacac
gtcatctacgagggcaagagtggacacatcctatcctacgatgccattaagaacccaaga
gaggccacgtgtagccccaggtcaggccatgagctcaaacgctcccacgatatgatggag
gccgccagaggccaccccgggagagaaggagcccccttcgaggggttgataatccgagcc
ctgcccagagaaagtccccatggggagtctaaggagaggcccatgatgactggatccatc
atgcaaggtacacccagaacctctgcagaggcctatgaggagagcatgaagtacggcaag
cagataaagcgggagagcccacccatccgctcatttgagggggggataggtaagggtaag
ccctatgagggggtgaacaccattaaggagatgggtcgctccatccatgagatccctcgc
caggagcagcctggacaggacccccgcaagacccccgacatggctgccaacagccgagct
gccatggagggctccatatcccagggccatcctctgagccagtcggccatcaagcacaac
gtcaagtccctgatcaccagtcccagtaggctgccccatggccccaccatgccccagctg
gaggccatggagcgggccaagtacgaggagagcaaggcgacggcggagcagcagcagcga
gcgcgccacacctctgtggtcaactcggccacctccgtgctgcgctccacccaccaggag
caaggcaagtcccagctcagccctggcatgtaccaagacgcagatgcccgcaggaccccg
gtcaactacagcaccagctccatgtccagaggctcgcccatgctgggccgaggacaggag
ggcactgggaagcctacgtcccacgataggaagagtaccatgacccccaatcagagggac
agtattccagccaagtcccctgtgtcagggggtgatcccaaccaccctatggcctcccac
agcccctttgacccccaccaccgccccatggcccccggagagcctcgctttcacctgcct
ccacacctagaccctaccctcttccaccgggccgtcctggaccctgctgcatacatgttc
ccgaggcagccgtccccgacaggctaccacaacacctaccagctgtacaccatggagaac
acaaggcagaccatcctcaacgattatatcacctcacagcagatgcaggttataccacgg
cccgatgttgccaggggcctgtcgccacgggaacagcaacagattgccatctcttatcct
cccggagcgcgagggattattgatctagcccagatgcctccaactatcctgttgcctcac
cctgggggaacaggtactcccactatggaccgcatcacctacatccccggagctcaaccc
cctttccctcctaggcctttcaacccagcctccatatctccagtctgtttctttgtgtcc
acaggccaccaagcccacctcgcagctacagtagctgcctgtcaggagcgagaacgggag
agggagcgcgaaagagaaagggagcatcgagagaaagagagggaaaaggagcgagaaagg
gagaacagggagagggaaagggaggagtacagacaacgagagcgtgagcgagtggtggct
gcagcggttgccaatgactacatgcgtggaggtccagggcagccagatagaccaggaagc
cgtggttacctgcgtagcccctccccatctatgaggtcacaggaagcccagcagcagcga
cccagcatcttccaaggaaccaacagcaagggtgtcatcacccctctcatgccatctgca
gcagcccaggcaggagcccgttacagcactgcagccgatgccctggctgccctggtggac
gctgccgcatccgcccctcagatggacgtcaacaagggcaaggactcctccaagcacgat
cgagatgacgacatgtcttcatcatcgtcctctgcggccaggcggcagcacgagcagcag
cagcaggaggcagacaggcgctccatgcagtctccctacatgtctctgccaggggggaaa
ccccacccaggatacgctgaggggtctggtggtccccaggggggcaaggacaagggtccc
cccaccaagtcacgcatcgaggaggagttgaggaccagaggaaagaccaccatcacggcc
gccaacttcatcgatgtcatcatcaagcgtcagatcgcctcggacaaggactcacgggag
agaggctcccagagctccgattcctccagcagcttgtcatccagtcggtatgaggtcccc
agtggaggagccatcgaggtgatcagcccagccaactctccagcccaggcccagcaggag
aaacagcagcaggatgacagggagagggctgacagggacagggctgcacaggcagcaaca
caagcagctggcatgcgttcctttgacatgatccgctaccgccagtcagcggagtcccag
cagcccccctcctcccaggctgacggagggtactcccagtcccagcaggtccccaagacc
caccgggtcatgaccctggctgaccacatctcgcatattatcacccaggactttgccagg
aaccaggatcctcctcagtcctccaccaccatctcctcctctgccaccaccacattccag
agcgcccagctgccagtatctagctcgggccccgggggccgtgccaagggccacagccgc
tacagcccagagaaccagaaccaggccacatcacaccatcagagacccacgcccagcaga
gtgtctcctgagaacgcccctgacaagcccagagccagacctggtaaatcccctgatcgg
ggtggcaggggggcggtggagagttatgagcccatctcccctccccagagctaccaggat
aaacaacaggaggccagagagcagcagcaacaaccccagagacgagaggctgaccagcct
gagatgaggggcgactctcgatcccctggcagtgtcagctacctgccctccttcttcacc
aagctggagaacacctcccctatggtgaaatccaagaagcaggagatatttcgtaagtta
aactcctctggtgtcggggattctgatgtaggaaatgcacaaccaggcacagagatcttc
aacttgcccgctgtgaccagctcaagcagcgtgaaccccaggaaccactccttcagcgac
ccggccagtaacctgggcctggaggacatcatccggaaggccctgatgggcaacctggat
gaaaggccagaggagcaccaaggagggcctcagcccagctgtaacacccccagcaacgag
gcccgccaggaggccaacccctcacctagcatgggcaagcagaaactgcagagcaaagcc
aacagtcggaagtccaagtcgcccaacccaggtcaggcatacgcagcagcagcccaggca
gcaggaggggagcggccctcgtcagtctcctccgtccactcagagggagactaccaccag
caggccacgggctgggcctgggaggaccggccctcgtccacaggctctatgcagttcccc
tataaccccctgaccatgcgcatgctgagcagcacgccccccacctccatggcctccccc
tccatgcaggcccagcagcccccaccaggaggccctctgggttcccagcagcagcgtgtg
tgggagcgggagcccctactgtcggagcagtatgagaccttgtcagacagcgatgactga
DBGET
integrated database retrieval system
