Oncorhynchus tshawytscha (Chinook salmon): 112257918
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Entry
112257918 CDS
T05605
Name
(RefSeq) homeobox protein cut-like 1 isoform X1
KO
K09313
homeobox protein cut-like
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112257918
Transcription factors [BR:
otw03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain CUT
112257918
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CUT
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
112257918
NCBI-ProteinID:
XP_024287623
UniProt:
A0AAZ3S0W8
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All DBs
Position
LG09:37793377..38059875
Genome browser
AA seq
1587 aa
AA seq
DB search
MFNKRCPCSIAPLRVLRALPLLSTELQPLALSVSASHSVSICLKMAANAGSMFQYWKRFD
LQQLQRELDATATALANRQDESEQSRKKLIDQSREFKKNTPEDLRKLVAPLLKGFQAEID
AVSKRSKESEAAFLSVYKRFIDVPDPVSALEATQQLQLKVQRMHDIETENQKLRETLEGY
TQEIAEVKNHEVTIKALKEKIEEYEETLKKQAKELGQEERREDEKEKKEGEDVQLHNNHA
EEACQQQENQESAVSKLEEADSKAQSLQTALEATQAELLDLKSKYDEESTSKANEIEVVM
SDLERANQRADVAEREAEALREQLTSANKSLQLATQIQKAPDMEQALEVLSRSSLEVELN
AKEREVLHLAEDVQRLQASLANVRENSASQISQLEQQLSTKESSLKQLEEKLQEQADYEG
IKKELSFRKSVEFGSSNYSSAQDSKKPLELLLEKSRGLHSESSSLRLNNSELSSLRERKV
KESPEGQQRLCTTPMGTNLKGSPPPPSSQLLLRTGSGGSSDTTPVTAANGTHHFSPTSGG
LGGQDFFSPSSLASAGTAFPLGGKVVLNSLLQRQLMQTFYSKALQDSVSASGQALLFSPS
NYPTHNSLSASPLPPHQSLQSQSQHPSAGSPDVNGLAPSPSQSEGAGSVSEGEDMDTSEI
ARQVKEQLIKHNIGQRIFGHYVLGLSQGSVSEILARPKPWNKLTIRGKEPFHKMRQFLSD
EQNILALRSIQGRQRENPGQNLNRVFQEVPKRRTGSEGSSRPGNITTRIRTSESGSDEAI
KSILEQAKRELQVQKADGVEDRQRRQTGYPRGMGNYFAKYAQSLRLDSSQPPPSSSIGGG
GGGIGSGGSSSSDETIRSILEQARREMEAQQAALEPILKASSMGPSDLALLSPKLLGAPI
LPASYSPLALSLKKPSIPPTSSPSSLLDFHSAMVKKEAGEVVGEGGGGGGLLMDGGTKQG
RGSWRDQWWSSMHPGGQGATASLNDDVRSQEDNKEKPPRLAGSSSVLAPSSVSISSLDYW
KDWPRAESPYSQASSEHGGGTKTQGPSRADTPQSSLSPLNLGPLGSLLTPTAKQAKPVVA
PLTPEQYEFYMYQEVDTAELTQQVKDKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPW
SKLTQKGREPFIRMQLWLNGELGQNVLPLQGQPQENTPKTSASCSPAPESPLSSAEESVK
SLGEQGGGGGGCGGGSSQVPPREPSEPSESQPGTPLPVPGHSGLSIQEMVAMSPELDTYV
ITKKVKEVLTDNNLGQRLFGETILGLTQGSVSDLLARPKPWHKLSLKGREPFVRMQLWLQ
DPRNVEKLMDMKRMEKKAYMKRRHSSVSESQTADSGGLSGGDFSQGGSPQHGLGHHLHQQ
QPPQQHLKKARVVLAPEEKEALKRAYQQKPYPSPKTIEELASQLNLKTSTVINWFHNYRS
RIRRELFIEEIQRGEGGSPSTRAGKASEGDSCDGTESDGTVEGTRPGHEHHPASEGEGGS
DHRDDGTTSATGSNAAGTSGHHKGGALDSLFSFPESTHVSSASVATTTAARNPRDSSLRK
KKAANLNNIIHRLEKAAGKDEPHEWEF
NT seq
4764 nt
NT seq
+upstream
nt +downstream
nt
atgttcaataagcgatgtccctgttcaattgctccgctccgtgttttgcgcgcgctcccc
ctcctttctactgaactccagcccctcgctctctctgtatcagcctctcactccgtctca
atatgtctcaagatggcggccaatgcgggatcgatgtttcaatattggaagcgctttgat
ttacagcagctgcagagagaactggatgccaccgccacagccctggccaacagacaagat
gagagtgagcagtctaggaaaaagctcatcgaccaaagccgtgagttcaagaaaaacaca
ccagaggatctgcgaaagctggtagctccgttgctcaaaggcttccaagcagagatcgac
gcggtgagtaaaagaagtaaggagtcagaggctgccttcctaagcgtgtacaagagattc
atcgatgtcccagaccctgtgtcggccctggaggctacccagcagctacagctgaaggtc
cagaggatgcacgacatcgagacggagaaccagaagctccgcgagacgctggagggctac
acccaggagatcgctgaggtcaagaaccacgaggtcacaattaaagcacttaaggagaag
atagaagagtatgaagagaccctgaagaagcaggccaaggagctgggccaggaggagagg
agagaggacgagaaggagaagaaagagggcgaggatgtgcaactccacaacaaccatgca
gaggaggcgtgtcaacaacaggagaaccaggagtctgcggtgtcaaagctggaggaggca
gacagtaaggcccagtccctacagacagcacttgaagcaactcaggcagagcttttggac
ctgaagagcaagtatgacgaagagtcaacatcaaaggccaatgagattgaggtggtgatg
tcagacctggagagagccaatcagagagcggatgtagcggagagggaagcagaggctctt
cgggaacagctgacatccgccaacaagtctctccagcttgccacacagatccagaaggcc
cctgacatggagcaagccttggaggttctgtcacgctccagtctggaggtggagctgaac
gcaaaggagcgggaggtactgcacttggctgaggacgtgcagagactgcaggccagcctg
gccaacgtccgtgagaactcggcctcgcaaatcagccagctggagcagcagctcagcacc
aaggagagctcactcaagcaactggaggagaaactgcaggagcaggcagactacgaaggc
atcaagaaagagctcagtttccggaagtcagtagagttcggctcttcaaactactcttca
gcacaggactctaagaagcctctggagttgttgttggagaagagtcgaggcctgcattct
gagagctcctccctgcgcctgaacaacagtgagctgagtagtttgagagagcgaaaggtc
aaagagtcaccagagggacaacagcgtctctgcaccacacccatgggcaccaacttgaag
ggctcccctccccctccctcctctcagctcctcctgcgcactggctcaggtggttcctcc
gacaccacccctgtcactgccgccaatggcacacaccacttctcgcccacgagtggcggg
ctgggtgggcaggacttcttcagcccctcctctctggcgtcggcgggcactgctttcccc
ctggggggcaaggtggtgctcaactccctgctgcagcgccagctcatgcagaccttttac
tccaaagccctgcaggactccgtgtccgcctccggccaggccctgctcttctccccttcc
aactaccccacccataactccctttcagccagccccctaccaccccatcagtctttgcag
tcgcaatcccagcacccgtcagcgggcagcccggatgtcaacggcctcgccccctcgccc
agccagtcagaaggggcggggagcgtctcggaaggcgaagacatggacacgtctgagata
gcgcgtcaggtcaaggagcagctgatcaagcacaacattgggcagaggatcttcggccac
tacgtgctggggttgtcccagggctcggtcagtgagatactggccaggcccaagccctgg
aacaagctgaccatccgaggcaaggagcccttccacaagatgaggcagttcctgtccgac
gagcagaacattctggcactgcgcagcatccaggggaggcagagagagaacccaggccag
aacctgaacagagtgtttcaggaggttccgaagcgaagaaccggctccgaaggctcctcg
aggccaggtaacatcaccacgcggatccgcacctcggagagtggctcagatgaggccatc
aagtccatcctggaacaggccaagagagagctgcaggttcagaaggctgatggtgtggag
gacagacagcgacgacagacaggttacccccgaggcatgggcaactattttgcaaaatat
gcacaaagtctcagacttgactcgtcccagccccctccctcgtccagcattggtggtggt
ggaggtggtatcggctcaggtggatcctccagctcagacgagaccatccgctccatccta
gagcaggcaaggagagagatggaggcccagcaggccgccctagagcccatcctcaaggca
tcctccatgggcccctccgacctggccctgctctcccccaaactcctgggcgcgccaatc
ctcccggcctcctactcgcccctggccctctccctcaagaagccctccatccccccaacc
tcctctccctcctccctcctggatttccactctgccatggtgaagaaggaggcaggagaa
gtggtgggagaaggcgggggaggaggagggttgctaatggatggtgggaccaagcagggg
cgaggctcctggagggatcaatggtggagcagtatgcaccccggggggcagggagccacg
gcaagcctgaatgacgatgtgcgtagtcaggaggacaacaaggagaagcctccccggctg
gccggctcatcctcggtgctggcaccctcctccgtctccatctcctccttggactactgg
aaggactggccccgggccgagtccccgtactcccaggccagctctgagcatggcgggggc
accaaaacccaggggcccagccgcgccgacacaccccagagcagtctctctcccctaaac
ttggggcctctggggtccctgttgacccccacagctaaacaagccaagcctgtggtggcg
ccgctcactcctgagcagtacgagttctacatgtaccaagaggtggacacggccgagctc
acgcagcaggtcaaagacaagctggccaagaacggcatctgccagcgcatctttggagag
aaggtgctgggcctgtctcagggcagtgtgagcgacatgctgtccaggcccaagccctgg
agcaagctgacccagaagggccgagagcccttcatccgcatgcagctctggctcaacgga
gagctgggccagaatgtcctgcccttacagggccagccacaagaaaacaccccaaagacc
tcagccagctgcagcccggccccggagtcccccctcagctcagccgaggagtctgtgaag
agccttggggagcaggggggaggaggagggggatgtggaggaggatcatcccaggtcccc
cccagggagcccagcgagccctctgagtctcagcccggcacgccactgcctgtccccggc
cactcaggtctcagcatccaggagatggtggccatgtccccagagctggacacctatgtc
atcaccaagaaggtcaaggaggtgctgaccgacaacaacctcggtcagcgtctgtttggg
gaaacgatcctgggtctgactcagggctcggtgtctgacctgctggcgaggcccaagccc
tggcacaagctcagcctgaaaggccgcgagcccttcgtccgtatgcagctctggctccag
gacccacgcaacgtggagaaactcatggacatgaaacgcatggagaagaaagcgtacatg
aagcggcgccacagctctgtgagcgagagccagacggcggacagtggtggcctgtcaggg
ggagacttcagccaggggggcagcccccagcacggcctcggccaccacctgcaccagcag
cagcctccccagcagcacctgaagaaggcccgtgtggtgctggctcccgaggagaaggag
gccctgaagagggcctaccagcagaagccctacccctcgcccaagaccattgaggagctg
gcctcacagctcaatctcaaaaccagcaccgtcatcaactggttccacaactataggtct
cgtatccgacgggagcttttcatcgaggagatccagcgaggtgagggcggctccccgtcc
accagggcgggcaaggccagtgagggcgacagctgtgacggtaccgagtcagatggcaca
gtggagggcacacgccccggccacgagcaccacccggcctcagaaggcgagggggggtcc
gaccacagagacgacggcacgacgtcagccactggcagcaacgctgcaggtaccagcggc
caccacaagggcggcgccctggacagcctgttcagcttccccgagagcacccatgtttcc
tctgcgtctgttgccaccaccactgctgcccgcaacccccgcgacagcagcttgcgtaag
aagaaagccgccaacctcaataatatcatccaccgcctggagaaggctgccggtaaagac
gagccccatgagtgggagttctga
DBGET
integrated database retrieval system
