Oncorhynchus tshawytscha (Chinook salmon): 112257923
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Entry
112257923 CDS
T05605
Name
(RefSeq) rab5 GDP/GTP exchange factor isoform X1
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
112257923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112257923
Membrane trafficking [BR:
otw04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
112257923
Protein recycling
Other Rab GTPase associated proteins
112257923
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
DUF2336
Tautomerase_3
CID_GANP
Motif
Other DBs
NCBI-GeneID:
112257923
NCBI-ProteinID:
XP_024287632
LinkDB
All DBs
Position
LG09:38172549..38207057
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AA seq
542 aa
AA seq
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MSQRKERRGIHVDQSELHCNKGCGYYGNAAWQGLCSKCWREEYQRARQKQIQEDWALAEK
LQREEEVAYASIQGAQSQPQAQPQASLAPFSKFEEKKTNEKTRKVTTVKKFFSPSSRTAP
KKAPTVGEEKLTGLRDWRGMFTPPWEMGSPTEALVARLRENQEGKTPSPSISRQSSIETD
RVSRDFVDFLKTLHKPGREVHKQSRAFIEIMANKKDLSADELSECVQDFYQNLSDRLMTH
FKGSSERVERVMDEVEKYIMTRLYKSVFCPETTDDEEKDLATQNRIRALHWVDIQMLCVP
VDEEIPEVSDNVVKAITDVIEMDSKRVPRDKLACITRCSKHIFSAIKITKSEPASADDFL
PTLIYIVLKANPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNL
DPEDFERYMSGQASPRRPEADSGWPQVDPPSGSAASSPALSQVYQNLDLLSGLGSRQDRV
LEGVQSLQRDLITWQESVEREVQEILEKYPLEIRLPTPSAIDSDNVENDRLPPPLTPQVF
AG
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcggaaggagcgccgcgggatccacgtggaccagtcagagctgcactgcaac
aagggctgtggttactatggcaatgccgcctggcagggcctgtgctccaagtgctggcgg
gaggagtaccagcgggcccgacagaagcagatccaggaggactgggccctagctgagaag
ctgcagagggaggaggaggttgcctatgccagcatccagggggcccagtcccagccccag
gcacaaccccaggcctctttggcgcccttctccaagttcgaggagaagaagaccaatgag
aagacacgcaaggtgaccactgtgaagaagttctttagtccctcgtcacggacagccccc
aagaaagcccccactgtgggagaggagaagctgacaggcctcagggactggagaggaatg
tttactcccccttgggaaatgggctctcccaccgaagcactggtggcaagactcagagag
aaccaggagggcaagacccccagcccctccatcagccgccaatcaagcattgagacggac
cgtgtctccagagactttgtggacttcctgaagaccctgcataagcctggccgtgaggtc
cacaagcagagccgagccttcatcgagatcatggccaacaaaaaggacttgagtgctgac
gagctgtcagagtgtgtccaagacttctaccagaatttgtccgaccgcctcatgactcat
tttaaaggctcttcagagcgtgtggagcgagtgatggacgaggtggagaagtacattatg
acacgcctgtataagagtgtcttctgccccgagaccacagacgatgaggagaaagacctg
gccactcagaaccggatacgggcgttacactgggtagacattcagatgctttgtgtgcca
gtggatgaggagatcccagaggtttcagacaacgtggtcaaagccataacagatgtcatc
gagatggactccaagcgggtaccccgggacaagctagcgtgcatcacgcgctgcagcaag
cacatcttcagcgccatcaagatcacgaagagcgagccagcctcggccgacgacttcctg
cccaccctgatctacatcgtgctgaaggccaaccctccacgcctgcagtccaacatccaa
tatatcacccgcttctgcaaccccagcaggctcatgactggagaggacggatactacttc
actaacctgtgctgtgcagttgccttcatcgagaaactggacgcccagtctctcaacttg
gacccagaggactttgagcgctacatgtcgggccaggcctctcctcgcaggcctgaggca
gacagcggctggccccaggtggaccctcctagtggttctgccgcctccagtcccgcccta
tcccaggtctaccagaacctggacctcctgtctggcctggggagccgacaagacagggtt
ctggagggggtgcagagcctacagagagacctgatcacctggcaggagagtgtggagcga
gaggtgcaggagatcctggagaagtacccgctggagatccgcctgcccaccccctccgcc
attgactcagacaacgtggaaaacgaccggctgccaccaccactgacgccccaggtgttt
gctgggtaa
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