Oncorhynchus tshawytscha (Chinook salmon): 112257962
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Entry
112257962 CDS
T05605
Symbol
vclb
Name
(RefSeq) vinculin isoform X1
KO
K05700
vinculin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510
Focal adhesion
otw04520
Adherens junction
otw04810
Regulation of actin cytoskeleton
otw04820
Cytoskeleton in muscle cells
otw05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112257962 (vclb)
04520 Adherens junction
112257962 (vclb)
09142 Cell motility
04820 Cytoskeleton in muscle cells
112257962 (vclb)
04810 Regulation of actin cytoskeleton
112257962 (vclb)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
112257962 (vclb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
otw04812
]
112257962 (vclb)
04147 Exosome [BR:
otw04147
]
112257962 (vclb)
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
112257962 (vclb)
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112257962 (vclb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vinculin
Talin_IBS2B
SelB_WH_2nd_bact
Mob_Pre
Motif
Other DBs
NCBI-GeneID:
112257962
NCBI-ProteinID:
XP_024287705
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All DBs
Position
LG01:81377870..81449714
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AA seq
1068 aa
AA seq
DB search
MPVFHTKTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLTGPVAAVQAAVSNLVRVGKD
TVQTTEDQIMKRDMPPAFIKVETACTKLVQAASMLKADPYSVPARDYLIDGSRGILSGTS
DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVESMEDLITYTKNLGPGMTKMAKMIDERQQ
ELTHQEHRVMLVNSMNTVKELLPVLISGIKIFVTTKTSGSQGVEESLKNRNFTFEKMSAE
INEIIRVLQLTSWDEDSWANKKDTEAMKRALALIDSKMTQAKSWLRDPNAQQGDAGEQAI
RQILDEAGKVGELCAGKERRDILGTAKTLGQITDLVSEMRARGQGASPAAMQKAQQVSQG
LDILTGKVENAARKLEAMTNSKQVIAKKIDAAQNWLADPNGGPEGEENIRAILTEAKKIA
DMCEDPKERDDILRSIGEMAALTAKLSELRRQGRGDTPEARTLAKQIATALQNLQSKTTK
AVANSRPAKAAVHLEGKIEQAQSWMENPTIDDGGVGQAAIRGLVAEGRRLANALPGPYRQ
ELLGKCEQVEQLMAQLANLAARGEGESPQARAVAQQLQETLKDLKEKMQEAMTHEVSDIF
SDTTTPIKLLAVASTAPSDAPNRDEVFDERAANFENHANKLGATAEKAAAVGTANKTTVE
GIQAAVKSTRDLTPQVVSAARILLRNPGNQAAYEHFETMKNQWIDNVEKMTGLVDEAIDT
KSLLNASEEAIKKDLDKCRVAMANHQPQMLVAGATSIARRANRILLVAKREVENSEDPKF
REIVKAASDELSRTISPMVMDAKAVAGNITDPSLQKGFMDSGYRILGAVAIVRDAFQPQE
PDFPPPPPPDLHQLHVSDEPAPPKPPLPEGEVPPPRPPPPEEKDEDFPEQVLGEMVSEPM
MMAARQLHEEARKWSSKGNDIIGAAKRMALLMAEMSRLVRGGSGNKRALIQCAKDIAKAS
DEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISEEESEQ
ATEMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLHWIRKTPWYQ
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgccggtttttcacacaaagacgatagaaagtatcctagagccggtggctcagcagata
tcccacctggtgataatgcacgaagaaggtgaagtggacgggaaagctatcccggatctc
accggacccgtggctgcagtgcaggcggctgtcagcaacctggtccgggtggggaaagac
actgtccagactacagaggaccagatcatgaagagagatatgcctccagctttcatcaag
gtggagactgcatgcaccaagctggtgcaggcagcatctatgttgaaagcagacccttac
tccgtccccgctcgagattacctcatcgacggctcccggggcatcctctctggcacatcg
gacctgctgctgaccttcgacgaggctgaggttcgtaaaatcattcgcgtctgcaaaggt
atcctggagtacctaaccgtggcagaggtggtggaatctatggaggacctgatcacatac
acaaagaacctgggtccagggatgacaaagatggcaaagatgattgacgagcgacagcag
gagctgacccaccaggaacaccgtgtgatgctggtcaactccatgaacacagtcaaagag
ctgctgcctgtactcatctcaggtatcaagatctttgtgacgaccaagacgtccggcagc
cagggagtagaggagtctctaaagaacaggaacttcaccttcgagaagatgagcgctgag
atcaacgagataattagggtgctgcagctcacttcctgggacgaagactcctgggccaat
aagaaggatacagaggccatgaagagagctctggcactcatcgactctaagatgacccag
gccaagagctggctgagggatcccaatgcccaacaaggggatgcaggagaacaggccatc
cgtcagatcctggatgaggcggggaaggtgggagagctgtgtgctgggaaggagaggagg
gatatcctgggcactgccaaaactctgggccagatcactgacctggtgtctgagatgagg
gccaggggtcagggggcatctcctgcagccatgcagaaggcccaacaggtctcccagggc
ctggacattctcacgggaaaggtggagaacgcagcccggaaattggaggccatgaccaac
tccaaacaggtcatcgccaagaagatcgacgctgctcagaactggctcgcagaccccaac
ggtggtcctgagggagaggagaacatccgagccatcctgactgaggccaagaagatcgct
gacatgtgtgaagaccccaaggagagagatgacatcctgaggtccatcggagagatggct
gctctcaccgccaagctctctgagctccggagacagggtagaggagatactccggaggcc
aggacattggccaaacagatagccacggctctgcagaacctgcagtcgaagaccaccaag
gctgtagccaacagcaggcctgctaaggcagcagtccacctggaagggaagatagaacag
gcccagagctggatggagaaccctaccattgatgacggtggagtgggccaggcagctatc
cggggtctggtggcggagggtcgtcgtctggctaacgccctgccaggtccctatagacag
gagctgctggggaagtgtgagcaggtagaacagttgatggcccagctagccaacctggct
gccaggggcgagggagagtcgccacaagcacgtgccgtggctcagcagctccaggagacc
ctgaaggacctcaaagaaaagatgcaggaagctatgactcacgaagtgtcggacatcttc
agcgacacgaccactcccatcaaactactcgctgtggcctccaccgccccgtccgatgcc
cctaacagggacgaggtgtttgacgagagggcggccaactttgagaaccatgccaacaag
ctgggtgccacggcagaaaaggctgccgctgtaggaacagctaacaagaccactgtggag
gggatccaagctgccgtcaagtctacaagggacctgacaccacaggtggtctctgcagcc
cgtatcctgctgagaaacccaggcaaccaggctgcatacgagcactttgagaccatgaag
aaccagtggattgacaacgtggagaaaatgacaggtttggtggacgaggccatagacacc
aagtctctgttgaatgcctctgaggaggccattaagaaagacctggataagtgtcgtgtg
gccatggctaaccaccagccccagatgttagtggcaggggcaactagcatcgcccggcgg
gccaaccggatcctcctggtggcgaaacgggaggtggagaactctgaggatcctaagttc
agggagatagtgaaggctgcatctgatgagcttagccggaccatctctcccatggtgatg
gacgccaaggctgtggctgggaacatcacagatccaagtctgcagaagggtttcatggac
tcaggttatcgaatcctgggtgccgttgccattgtgagagatgccttccagccacaggaa
ccagacttcccaccaccaccacctcctgatctgcatcagctgcacgtcagcgacgagccc
gccccacccaaaccccctctccccgagggtgaggttcctccccccagaccccctccccca
gaggagaaggacgaggacttcccagagcaggtattgggagagatggtgagcgagcccatg
atgatggccgccaggcagctccacgaggaggcccgcaagtggtctagcaagggtaacgat
atcatcggtgcagccaagagaatggccctgctcatggctgagatgtcccgtctggtgcgc
ggtggcagtgggaacaagcgtgccctcatccagtgtgccaaagacatcgccaaggcctca
gatgaggtcacaaggctggccaaggaggtggccaagcagtgcacagacaaacgcatccgg
actaacctgctccaggtgtgtgagcggatccccaccattagcacacagctcaagatcctc
tccacagtcaaggccaccatgttgggtcgtaccaacatcagtgaagaggagtcagagcag
gccacagagatgttggttcacaatgcccagaacctgatgcagtctgtgaaggagacggta
agagaggctgaggctgcttccatcaagatccggacagatgcaggcttcactctccactgg
atccgtaagacaccctggtaccaataa
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integrated database retrieval system
