Oncorhynchus tshawytscha (Chinook salmon): 112258008
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Entry
112258008 CDS
T05605
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04140
Autophagy - animal
otw04148
Efferocytosis
otw05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112258008
04148 Efferocytosis
112258008
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
112258008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112258008
Membrane trafficking [BR:
otw04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
112258008
Hops complex
112258008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
VPS11_C
zf-C3HC4_2
zf-rbx1
zf-RING_2
zf-C3H2C3
zf-C3HC4
zf-ANAPC11
zf-RING_5
zf-RING-like
DUF6543
Kbp-5
Motif
Other DBs
NCBI-GeneID:
112258008
NCBI-ProteinID:
XP_024287814
LinkDB
All DBs
Position
LG09:44476669..44502262
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AA seq
929 aa
AA seq
DB search
MAAFLQWRRFVFFDKETVKDAGDNGKNFVLPVGISACDSGRGHIVLGDMDGQIWFLTRSL
QLSSFQAYKLRVTHLYQLKQHSILVTVGQDEQGINPLVKVWNPDKRDSGNPLCTRIFPAI
PGNKPTEVSCLSVHENLNFMAIGFTDGSVVLTKGDITRDRHSKTLTLHEGTCPITGLAFR
QQSKVTHLFVATLEKVHCYTLSVKEYPKLELDTHGCALRCSALTDPSQDSQFIVAGDECV
YLYQPDERGPCFAFDGHKLLAHWHRGYLLLLTRDTKSPNKSEFGSRETSPSEKQILTIYD
LDNKFIAYSASFDDIIDVLAEWGSFYILTRDGKMFVLQEKDTQTKLEMLFKKNLFVMAIN
LAKSQHLDSDGLSEIFRQYGDHLYVKGDHDGAIQQYIRTIRKLEPSYVIRKFLDAQRIHN
LTAYLQALHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKSSESEVHFDVEIAIKVLRQA
GYHSHAVFLAERHQHHKWYLKIQLEDLKNYQEALRYIGRLPFDQAESNMKRYGKTLMHHV
PDGTTLLLKGLCTDYQPSRDAMERDSLDRGPAVAKKANSEEFISVFANNPRELRAFLEHM
IEVEPFSSQGVYDTLLELRLQDWAHEQDSERKKVLQGAALSLLRSDNTVFDKALVLCQMH
NFKEGVLYLYEKGKLYQQIMHYHMQNEEYGKVVEACKRYGDQEVCLWEQALGYFARKEED
CKAYISQVLEHIDQNNLMPPLLVVQTLAHNSTATLSVIKDYLINKLQRESQQIEDDERKI
RQYREETAHLRAEIQELRSSAKIFQKTKCSMCNSPLELPSVHFLCSHSFHQHCFESYAES
EAECPTCTPENRKVMDMLRAQDQKRDLHDHFTRQLRCSNDGFSVVADYFGRGVFNKLTLV
TDPPGSKVGVGSLEADLQRDLLIHTKRNT
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgttcttacagtggagacgatttgtgttttttgataaagagaccgtgaaggac
gctggagataatgggaagaactttgtcctcccggttggcatatctgcatgtgactcgggc
cggggccacatcgttcttggagatatggacggtcagatctggtttttgacacgctcccta
cagttgtcctcctttcaggcttacaagctgagagtgacccacctgtaccagctcaaacaa
cacagcattttggtcacggttgggcaggacgagcaaggaattaaccccctggtgaaggta
tggaatccggacaagcgtgacagcgggaatcctctgtgtaccagaatattccctgcaatt
cctgggaacaaaccaacagaggtgtcctgcctcagtgtacacgagaacctaaactttatg
gctattggcttcacagatggcagtgtggtgttgacaaagggtgacataacccgggacagg
cacagtaaaaccctgacactgcatgagggcacctgtccaatcacgggcctcgctttccgt
cagcagagcaaagtcactcacttatttgttgccactctggaaaaagtccattgctacact
ttgtcggtgaaggagtaccctaaactggaactggacacccacggctgtgcgctgcgttgc
tctgcactcacagacccctcccaggactcccagtttattgtcgcgggggatgagtgtgtg
tacctttaccagcctgatgaacgggggccctgtttcgctttcgatgggcacaagctactg
gcccactggcaccggggctacctcctgctgctcaccagggacaccaagtctcccaacaag
tctgaatttgggagtagagagacatctccttcggagaaacaaatcttgacaatctatgac
ctggacaacaagttcattgcctacagcgcttcctttgatgacatcattgacgttctggct
gaatggggctccttctacatcctgactcgggatggaaaaatgtttgtgctgcaggagaaa
gacactcagaccaagctagagatgctcttcaagaagaatctgtttgtgatggccatcaac
ctggctaagagccagcacttggacagtgacgggctgtctgagattttcaggcagtacggt
gaccacctctacgtgaagggggaccatgatggagccatccaacagtacatccgcacaatc
aggaagctggagccttcttacgtaatccggaagtttctggatgctcagaggatccacaac
ctgacggcctacctccaggccctgcaccggcagtcgctggccaatgccgaccacaccacc
ctgctgctcaactgctacaccaagctcaaggacagctctaagcttgaagagttcatcaag
agcagcgaaagcgaggtccacttcgacgtggagattgcaatcaaggtgctgcgccaggca
ggctaccacagtcacgcagtcttcctggccgagaggcaccagcaccacaagtggtacctg
aagatccagcttgaggacctgaagaactaccaggaggctttgcgttacattggacgactt
cctttcgaccaggcagagagcaacatgaaacgctacggcaagaccctgatgcaccacgtc
cccgacggcaccacactgcttctcaagggcctgtgtactgactaccagcccagccgggat
gccatggaaagagacagcctggacagaggcccggcggtggccaagaaggcaaattcagag
gagttcatctctgtgtttgctaataacccgcgggagctaagggccttcctggagcacatg
attgaggtggagcccttctcctctcagggggtatatgacacactgctagaactacggctg
caggactgggcacatgaacaagactctgagaggaagaaggtcctgcagggggcagcactg
tccttgctgaggagcgacaacaccgtatttgacaaggccctcgtcctgtgccagatgcac
aacttcaaagaaggggtcctgtacctctatgagaagggcaaactgtaccagcagatcatg
cactaccacatgcagaatgaggagtatggcaaagtggtggaggcctgcaagcgctatggc
gaccaggaagtatgcttgtgggagcaggcgctgggatactttgcccgcaaagaggaggac
tgcaaggcctacatcagccaagtcctggagcacatcgaccagaacaacctgatgcctccc
ctattggtggtgcagacgctggcacacaactccacagccacgctgtcggtcatcaaggac
tacctgatcaacaagctgcagagggagagccagcagattgaggatgatgagcgcaagatc
cgccagtaccgcgaggagacggcccacctccgcgctgagatccaggaactcagaagcagc
gcaaagattttccagaagaccaagtgcagcatgtgcaacagccccctcgagctgccctct
gttcacttcctgtgcagtcactccttccaccagcactgctttgagagctacgccgagagt
gaggccgagtgtcccacctgcacaccggaaaaccggaaggtcatggacatgctgcgggcc
caggaccagaaacgagacctgcacgaccacttcaccagacagctgcggtgctccaatgat
ggtttctccgtggtggcggactactttggccgtggggtgttcaacaagctgaccctggtc
accgacccgccgggcagcaaggtgggagtgggaagcctggaggcagacctgcagagggac
ctactcatccacaccaagaggaacacttga
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