Oncorhynchus tshawytscha (Chinook salmon): 112258023
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Entry
112258023 CDS
T05605
Symbol
rsf1b.1
Name
(RefSeq) remodeling and spacing factor 1 isoform X1
KO
K11657
remodeling and spacing factor 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
112258023 (rsf1b.1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112258023 (rsf1b.1)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Chromatin remodeling factors
RSF complex
112258023 (rsf1b.1)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
WHIM1
PHD
DDT
WSD
Motif
Other DBs
NCBI-GeneID:
112258023
NCBI-ProteinID:
XP_024287842
LinkDB
All DBs
Position
LG09:45377404..45416115
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AA seq
1947 aa
AA seq
DB search
MAASAPSAGFSDLCPSYAVICSFLERYGALLDLPELTFPQLERYLQDTSSVPKLLVDLHV
KLLRKIGKSVSADRWEKYIVKVCHEFNSTWAWELENKGYKDMSVECKTGILKHLCECQFD
DNVKFKTAINEEDPDKMRLHPIGKDKDGLMYWFQLDQDNNVRVYVEEQDDLDGSSWKCIV
RDRNSLAEILAQLKTQIDPALLTKKEGEEEDENKKTGGEGEIKKTEDTSGDEEDKLSKDT
ASLVSPKTENTERKSPKEESKLDDSDAKSPSNGLKDNQVESESTRRSEKPMVDDKATINT
QAIKEELMEVSESKESTATSATEPLAEKHCVTPQTEQTEEAKRKNAEELQRVMKNDQQAK
IPLKKREMKLSEDFDNSSGGGSRIIVRNPSVAPVKEAPKVEETSKEVSVALVGTMETKSD
QVNGDAQPVTEKSVNKGMRESPKEMGIQRESADSKEQQTKAVAREECEAAEAIEKEKTNL
SLDMDKKEGEMASNAEEPMADETNLQKTVPAPKAEKESTEALKKSSLKEAKSSSPLTKPL
TSSKDATSTLEKSSDLKEEQKVKVSKWDVKVRRTEHKTSTSIETDNNPLSSKSQKPDETK
GTDSSIAFQEVNLAAFKETVVPKDSCPLSVVKEMEKTSIIKATEKLLNPKNPETSVITKQ
TERPDPITDKLESSKRPESPAVIKNTENPSNKESAEKCDGSNDIKTSSVIKKTEISEKSK
DAKNLASSKETNTSSLLKKADKPVPNKEAEKLESTKETNKSLVIKMTVKPEASKHTEKCD
TPKHIMSALTKEKPAVSAVSTNTNVAPEVKKKNVLEKTAICKDETRAVAAVTERQSGPKD
VEMADIFEKSNQSQLEGPKKVEKLGIPKDTLKSTMPKYAEKSAKLATPKDAEKLATPKGA
EKLAAPKDAEKLAAPKDAEKLAAPKDAEKLAAPKDAEKLAAPKDAEKLAAPKDAEKLATP
KDAEKLPKSAMSENAGKSATPTDAENSAKSATPIPEDTEILATPEEAEKSVNTKDTEKSA
TLKNTETASKKIEDFTICEGQKPDASKETEKLADIMPAAAKGEKHVTFEDSKQLPSLKES
VPVGRKQEEPMEISSEKSTDDNVIIRGHADKGWTKNSVKSGENSESEPIKDSNRMDCNAP
SEKQATSKKASSLTDAEGETDKSQVKVIKEDATTQGCPKEDEKEDDQAKKNDQKEDDGAE
KDNSTAAEKLGEAKASKGSENKEDEKKDAGTTSEIQEEGIRLKIRGITHRRRAELQRTER
DSGSDTGETGRSLRRSPRICRPTAKGVEFQDRRLEKKETTPPEEEEDEEEETVQRKPREK
VDLDGQSTSKGRRRRKTRWSNTRTRRRKKNGSGDDNESESSEEESEEDDSDESFKVEKGK
RRWRNRNRERHSDDSDTSSDDDLPPNEDPCKHCGLPNHPELILLCDSCDSGYHTACLRPP
LMIIPDGEWFCSPCQHKLLCDKLEEQLANLDAALKKRDRAERRKERLVYVGISVENIITP
SLEVEEEKEEEKEEEVKKEKKEKKEKSKSWGRRSTRAKKSISYRFDEFDEAIEEAIEEDI
READGGGAGRGKDMANITGHSRGKDMSTILAAGEVGQGKENGRPPRPNAGQRRKKRRRLN
DLDSDSTVEEEESEDEFRLSDSTEEEEFVASDKSDAESEAAVDSNDDSDFGSTRRRTART
RRPAKCQRSTRPRRRRRARGYSDDEEEETSDEDEDEMISEGSSEFSDSDLDCSQRRSRRS
HTKRQVNYCESSGDSDGSKAGTNRDKVKPRRRLASSDSEASSSRGSDDGKRERTRLKRRA
DSSEEESQQRRRRLSLKRRRASEEDDDDSDESSEGERPVRKRVNRIDSDDSDKEEEKEET
KEEEEGGVLGKGASPLDYNLVELHPPTNGQSPIKALEGLAHIGPQKPGATAVTIAPNGLE
LAPQDDDEDDLLGVTDLVDFVCNSDVL
NT seq
5844 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctcggctccatcggcgggattctccgatttgtgcccaagctacgccgtgata
tgctcttttctagagcgttatggagctttgctggatctaccggagctcacatttccgcag
ttggagagatatctccaagacacatcttcagttccaaagctcttggtggaccttcatgtg
aagttgctgaggaagattggcaagtctgtgtccgcagacagatgggagaagtacattgtg
aaggtgtgccatgagttcaacagtacctgggcatgggaacttgaaaataaaggatacaaa
gacatgtctgtggagtgtaagactggaatcctcaaacacttatgtgagtgccagtttgat
gacaatgtcaagttcaagactgcaattaatgaggaggatcctgataagatgcggctccat
cccattggcaaggacaaggatggcctaatgtactggttccaacttgaccaggataacaat
gtgagggtctatgtggaggagcaggacgacctggacgggtcctcctggaagtgcattgtc
agagacagaaacagcttggctgagatcctggcacagctgaagactcaaatcgacccagca
ctgttgacaaagaaagaaggagaggaggaagatgagaacaagaaaactggcggagaaggg
gaaattaaaaagacagaggatacctccggggatgaagaggacaaactctccaaggataca
gcttctttagtgtccccaaaaacagagaatacagaaagaaaatccccaaaagaggaatca
aagctggacgattcagatgccaaatccccatcgaatggcctcaaagacaaccaagtcgag
tcagagtcaacaagacgatccgagaagccaatggtggatgacaaggccaccattaacacc
caggccatcaaagaagagctgatggaggtgtcagaatccaaggagagcacagccacaagt
gctacagagcctcttgcggagaaacattgtgtgacgccacagacagaacagactgaggaa
gccaagaggaagaatgcagaggaactccaaagggtgatgaagaatgaccagcaggccaaa
atccccttgaaaaagagagagatgaaacttagtgaagattttgataatagtagtggcggt
ggcagtagaatcattgtgcgtaacccatctgttgctcctgtcaaagaagctcctaaagtt
gaggagacaagtaaagaggtctctgttgccctggtggggacgatggagactaaaagtgat
caagtgaatggtgatgctcagcctgtcacagaaaaaagtgtcaataagggaatgagagaa
tctcctaaagagatgggaatacagagagaatctgctgatagcaaagaacagcaaacaaaa
gctgttgctagggaagaatgtgaagcagcagaagctattgaaaaagagaagacaaatctg
tccctggacatggacaaaaaggaaggggagatggcaagcaatgctgaggagcccatggcc
gatgaaacgaacctacagaaaactgttccagccccaaaggcagagaaggaaagcactgaa
gcactgaaaaaatcatccctaaaagaggctaaatcttcatcccctctgacaaagccattg
acttcatctaaggatgcaacaagcacactggaaaagtcctctgatcttaaagaggaacaa
aaagtcaaggtatccaagtgggatgtgaaagtgcgtcgtacagaacacaagacatccaca
tcaatagaaacagataacaaccctttatctagtaagtcacagaaaccagatgaaactaaa
ggaacagattcatccattgcatttcaagaggtaaatttggctgcctttaaggaaacagtt
gtccctaaagacagttgtcccctttctgtagtgaaagagatggaaaaaacatccatcata
aaagccacagaaaagttgttgaaccctaaaaacccagaaacatcagtcatcactaaacaa
accgagagacctgatcccattacagataaactagaaagctcaaaacgccctgagtcgcca
gcagtcataaaaaatacagagaatccatctaacaaagagagcgcagagaaatgtgatggt
tctaacgatatcaaaacatcttctgtcattaaaaagacagagatttcagaaaagagtaaa
gatgccaagaacctggccagctctaaagagaccaatacgtcctcattacttaaaaaggca
gacaaaccagttcccaataaagaagcagagaaactggagagcactaaagagactaataaa
tcgttggtcattaaaatgacagtgaaaccagaggcatctaaacatacagagaaatgtgat
acccctaaacacattatgtcagctctcaccaaggagaaacctgctgtcagtgctgtaagc
acaaatacaaatgttgcccctgaggtgaagaaaaaaaacgtcctggagaaaacagccatc
tgtaaagatgagacgagagctgttgcagcagtgactgagagacaatctggccctaaagac
gtggagatggcagacatctttgagaaatcaaaccaatcccaactggaaggacccaaaaag
gtagagaaattgggtatccctaaagacacgttgaaatcgacaatgcctaaatatgcagag
aaatctgctaaactggctacgcctaaagacgcggagaaattggctacgcctaaaggcgcg
gagaaattggctgcgcctaaagacgcggagaaattggctgcgcctaaagacgcggagaaa
ttggctgcgcctaaagacgcagagaaattggctgcgcctaaagacgcggagaaattggct
gcgcctaaagacgcggagaaattggctgcgcctaaagacgcggagaaattggctacgcct
aaagacgcggagaaattgcctaaatcggctatgtctgaaaatgctgggaaatctgctacc
cctacagacgctgagaattcagctaaatcagctacacctatccctgaagacacggagata
ttggctactcctgaagaagcggagaaatcggttaacactaaagacactgagaaatcggct
acccttaaaaacacagagactgcttctaaaaagattgaagatttcacaatctgtgaagga
cagaaaccagatgcctctaaagaaactgagaaactggcagacataatgccagctgcagca
aaaggagagaaacatgtcacctttgaggattctaagcaattaccttctctcaaagagtct
gtcccagtggggaggaaacaggaagagcctatggaaataagttcggaaaagtcaacagat
gacaatgtaattattaggggacatgccgataaaggctggacaaagaactctgttaaaagt
ggagagaattctgagagcgagcctatcaaagactcaaaccgcatggactgtaatgcacca
tcagaaaaacaggctaccagcaagaaggcatcatctctcactgatgctgaaggtgagaca
gacaaaagccaggtcaaagtaatcaaggaagatgccacaacacagggatgccctaaagag
gatgagaaggaagatgatcaggctaagaaaaacgaccaaaaggaggatgatggtgctgag
aaagataactcaactgcagcagagaaactgggtgaggcaaaagcaagtaaaggttctgag
aataaagaggatgaaaaaaaggatgcaggaacaacatcagagattcaagaggaggggatt
cgcctgaaaatacggggaattactcatcgaaggagagctgagctccagagaacggagagg
gactcggggtccgatactggtgagactgggagatccctgaggaggtcacccaggatttgc
aggccaaccgctaagggggtggagttccaggacaggaggctggagaaaaaagagaccacg
ccccctgaggaggaagaggacgaggaggaggaaactgttcagaggaaaccgagagaaaag
gttgatctagatggacagtccacatctaaggggcgacggaggagaaagacccggtggtcc
aacactcgaacacgacggcgcaaaaagaatggttctggtgatgacaatgaaagtgaatca
agtgaagaggagagtgaggaggatgacagtgatgagagctttaaggtggagaagggcaag
aggaggtggaggaaccggaacagagaaaggcacagcgacgactctgacacatcctcggat
gatgacctccctcctaacgaagacccctgcaaacactgcggcctccccaaccatcccgag
ctgatcttgctatgtgactcgtgtgacagtggctaccacacggcctgcctcagaccccct
ctcatgatcatcccagatggggagtggttctgttcaccctgccaacataagctactctgt
gacaagcttgaggagcagcttgctaatctcgatgctgccctgaaaaagagagatcgcgct
gagcgaagaaaagaacgtttggtctatgttggaataagtgtcgaaaacatcatcactccc
tctttggaggtagaggaagaaaaagaggaagaaaaggaggaagaagtgaagaaggagaag
aaagagaagaaagagaaaagcaagagctggggtcgaaggtcgacaagggcaaagaaaagc
ataagttacaggtttgatgaatttgatgaggctatcgaggaggcaattgaagaagacatc
agagaagctgatggtggaggagctggtcggggcaaggacatggccaacatcacaggccat
agcagagggaaggacatgtccaccatcctggcagcaggagaggttggtcagggcaaggag
aatggacgcccgccacggcccaacgccggccagcgcaggaagaagcgccggcgtctcaac
gacctggacagcgacagcactgtggaggaggaggagagcgaggacgagttccgtctcagt
gacagtacggaggaagaggagtttgtggcgtcagacaagagcgacgcagagagtgaagcg
gcagtcgactctaacgacgacagtgacttcggcagcacgcgacgcagaactgccaggaca
aggaggccggccaaatgtcaaaggagcactcggccgcgaaggcgccgcagagcgagaggg
tactcagatgatgaagaggaggagacgagtgatgaagatgaggacgaaatgatctcagag
ggttccagcgagttcagcgacagcgacctggattgtagccaacgccgatcccgccgtagt
catacaaagaggcaggtcaactactgcgagtcgtccggcgactccgatggctcaaaggcc
ggcaccaaccgggacaaagtcaaaccgcggaggcgcctcgccagctccgacagcgaagca
agctcctccagaggctcggacgacggcaagagggagaggactaggttgaagaggagggct
gactcgtctgaggaagagtcccagcagcgccgcagacgcctctcgctgaaacggaggcga
gcctccgaggaggacgatgacgattccgatgaatcatcggagggagagcgtccggtccgc
aagcgtgtgaaccgcatcgactcggacgactctgacaaggaggaggagaaggaagaaaca
aaggaagaggaggaagggggggtgctggggaagggagccagcccattggactacaacctg
gtggaactgcacccccctaccaacggacagagtcccatcaaggccctggagggcctggct
cacattgggccccaaaaacctggagccacagccgtcaccatagcgcccaacggactggag
ttggcgccacaggacgatgatgaagatgacctgctgggggtcacagacctagtggacttt
gtctgcaatagtgatgtgttgtaa
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integrated database retrieval system
