Oncorhynchus tshawytscha (Chinook salmon): 112258082
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Entry
112258082 CDS
T05605
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1 isoform X3
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
112258082
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112258082
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
112258082
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Gene cluster
GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
SR-25
Motif
Other DBs
NCBI-GeneID:
112258082
NCBI-ProteinID:
XP_024287955
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Position
LG01:complement(82243208..82465442)
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AA seq
1192 aa
AA seq
DB search
MPKGKHSYYPDSPSIRISKMDVIIPFSPDVPCDSNGQRMWWAFLASSMVTFFGGLFIILL
WRTLKYLWTVCCHCNTKKKNAQRVHNPTSHGDGIKHTKETVAALSEVGWMTSVKDWAGVM
ISAQTLTGRVLVVLVFALSIGALVIYFIDSSDPIESCQNFYKDFTLQIDMAFNVFFLLYF
GLRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSWLGLRFLRALRLIQFSEILQFL
NILKTSNSIKLVNLCSIFISTWLTAAGFIHLVENSGDPWENFQNSQALSYWECVYLLMVT
MSTVGYGDVYAKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGSYSAVNGRKH
IVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKRHFTQVEFYQGS
VLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYH
NKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSFIKIEEDTW
QKYYLEGVANEMYTEYLSSAFVGLSFPTICELCYVKLKLLLIAIEYKSDIRESSTLINPG
NHVKMQEGTLGFFIASDAKEVKRALFYCKACHDDITDPKRIKKCGCKRFEEEQYSTLSPK
KKQRNGDTRNSPNGSPKMMRHDPLLMPGNEQIENMDMNVKKYDSTGMFHWCQSKDIEKVI
LTRSEAAMTVLSGHVVVCIFGDAKSALVGLRNLVMPLRASNFHYHELKPIVFVGSLEYLK
REWETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSANQNNIDDASLQDKECILAS
LNIKSMQFDDSIGVLQANSQGFTPPGMDRSSPENSPLHGGLVRQASITTGANIPIITELV
NDSNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIRTLVTG
GATPELEGLLAEENALRGGYSTPQTLANRDRCRVAQLALYDGPFADLGDGGCYGDLFCKA
LKTYNMLCFGIYRLRDAHLNTQSHTSQCTKRYVITNPPYGFELVPSDLIFCLMQFDHNAG
QSRASLSHSSHSSHSSSKKSSSVHSLTATNRTNRAKSRDSRDKQNATRMNKMGQEKTWFT
DEPENAAYHRNIHIKPMSTSHSSHTANHQVNQNPYKSTNNHIPSIREVEDEC
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgcctaaaggtaaacatagttactacccggactctccctctatccgcatatccaagatg
gatgtgatcatcccgttctccccagatgtgccctgtgatagcaatgggcagcgcatgtgg
tgggctttccttgcctcctccatggtcacgttctttgggggtctcttcatcattctgctc
tggagaactctcaagtacctgtggaccgtctgctgccactgtaacaccaaaaagaagaat
gctcagcgggtccacaaccctacctcccatggggatgggatcaagcacaccaaggagacg
gtggctgcactcagtgaggtgggctggatgacctccgtcaaagactgggctggggtcatg
atatcagcccagacactgactggcagagtcctggtggtgcttgtctttgccctcagcatc
ggagcccttgtaatatacttcatagattcctctgaccccatcgagtcctgtcagaacttc
tacaaagacttcacgctacagattgacatggctttcaacgtcttcttcctcttgtacttt
ggtctacggtttattgcagccaatgacaagctgtggttctggctggaggtgaactcagtg
gtggacttcttcactgttcccccagtgttcgtgtctgtttatctcaacaggagctggctt
ggcttgaggtttttaagggcgttaaggttgatacagttctcagaaatcttacagtttttg
aacatattaaaaacaagcaattccataaaactggtgaacttatgttcaatcttcataagt
acatggctaacagcggcaggcttcatacatctggtggaaaactcaggggatccttgggaa
aacttccaaaattcccaagcactttcctactgggaatgtgtctacttactcatggttact
atgtccactgtgggctatggagacgtgtatgcaaaaaccaccctgggacgacttttcatg
gtcttcttcatccttggtggtttggccatgtttgcgagctacgtccctgaaatcatagag
ttaataggaaaccgcaagaaatatggtggttcctatagtgcggttaatgggagaaagcac
atcgtggtctgtggtcatataacacttgaaagtgtgtccaacttccttaaagacttccta
cacaaggacagggatgatgtcaatgtagaaattgtttttctccataatatttcccctaat
cttgagctggaagccttgtttaaacgccacttcacccaggtggagttctaccagggatct
gttctcaacccacatgacctggccagagtcaagatagagtcagcagacgcctgtttgatc
ctagctaataaatactgtgcagaccctgatgctgaggatgcctccaacatcatgagggtg
atatccatcaagaactaccacccaaaaatccgaatcattacccagatgttgcagtaccac
aacaaggcccaccttttgaacattcccagttggaactggaaggagggtgacgatgccatt
tgccttgctgagctgaagctgggcttcatagcacagagctgtctggctcagggcctgtcc
accatgctggccaacctcttctccatgaggtccttcatcaagattgaagaggacacgtgg
cagaagtattacctggaaggagtagccaatgaaatgtacactgagtatctgtctagtgcc
tttgtgggcttatccttcccgaccatttgtgaactctgctatgtgaagctgaagctgcta
ctgattgctatcgagtacaagtctgatataagggaaagcagcaccctcatcaaccctggg
aaccatgtgaagatgcaggaaggaaccctggggttctttatcgccagcgatgccaaagaa
gtaaagagggcacttttttactgcaaagcttgtcacgatgacatcacagatcccaaaagg
ataaagaaatgtggatgcaaacgatttgaagaggagcagtattcgacactgtcgcctaaa
aagaaacaacgtaatggagacacaaggaactcacccaacggttcaccaaaaatgatgagg
catgaccctctcctcatgccggggaacgaacagattgagaacatggacatgaacgtgaag
aagtacgactccacagggatgttccactggtgccagtccaaagacatcgagaaggtcatc
ttgaccagaagtgaagctgccatgactgtcctaagcggccacgtggtcgtctgtatattt
ggagacgcgaagtcggctttggtgggcctaaggaaccttgtgatgcctctgagagctagc
aacttccactaccacgagctgaaacccatcgtgtttgtgggttccctggagtatctgaag
agggaatgggagacccttcacaacttccccaaagtctccatcttacctggcacaccatta
agccgggccgatctgagggctgtcaatatcaacctctgtgacatgtgtgtcatcctgtcg
gccaatcagaacaatattgacgacgcgtcactgcaggacaaggaatgcatcctggcgtca
ctcaacatcaagtccatgcagtttgacgacagcatcggggtcttgcaggctaactcccaa
ggtttcactcctccaggcatggacaggtcctctcctgaaaacagtccacttcatgggggg
ttggtccgacaggcttccatcacaacaggggccaacatccccatcatcactgaactagtg
aatgactccaatgttcagttcctggaccaggatgatgatgatgaccctgacacagaattg
tacctcactcagccctttgcctgtgggacggccttcgcagtcagtgtgctggattccctg
atgagtgcgacatacttcaatgataatatcctcaccctgatccggacgctggtaacaggg
ggggccactccggagctggagggtctgttggcggaggagaacgcattacgaggaggctac
agcacgccgcagaccctcgctaaccgggacaggtgtcgtgtggcacagctagccttgtac
gacgggcctttcgctgacttgggagatggtggctgctacggtgacttattttgtaaagct
ttaaaaacatacaacatgctgtgcttcggaatttatcgattaagagacgcacatttaaac
acacaaagtcatacaagtcaatgcactaaacggtatgtgataaccaatccgccatatggt
tttgagttggtgccatcagacctgatcttctgcctgatgcagtttgaccacaatgcgggc
cagtccagggccagcctctcccacagctcccactcctcccattcttccagcaaaaagagc
tcctccgtccattctctcactgccaccaaccgtaccaaccgcgccaagagcagggactca
cgggacaaacagaatgcaacaaggatgaataaaatgggccaagaaaagacatggtttaca
gatgagcctgagaacgcggcctaccacaggaacattcacatcaagccaatgagtactagt
cacagtagtcacacagccaaccaccaggtcaaccagaacccttacaaatccaccaacaac
catattccatccatcagagaggtggaggacgaatgctga
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