Oncorhynchus tshawytscha (Chinook salmon): 112258094
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Entry
112258094 CDS
T05605
Name
(RefSeq) lymphoid enhancer-binding factor 1 isoform X1
KO
K02620
transcription factor 7
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04310
Wnt signaling pathway
otw04520
Adherens junction
otw04916
Melanogenesis
otw05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
112258094
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
112258094
09150 Organismal Systems
09152 Endocrine system
04916 Melanogenesis
112258094
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
112258094
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112258094
Transcription factors [BR:
otw03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG TCF-1
112258094
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CTNNB1_binding
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
112258094
NCBI-ProteinID:
XP_042182952
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All DBs
Position
LG09:complement(50639930..50712127)
Genome browser
AA seq
484 aa
AA seq
DB search
MPQLSSGGGDDLGANDEMISFKDEGDQDEKIQENAFTERDLADLKSSLVNESETNQSPNA
AAVRRGQQNEHRGYQEKHREHLDGVSKHQDGGMYKTAYPGYPFLMLPDPYIPNGSMSPSS
NKVSVVQQSHGMHPLTSLLPYSNDHFNPSPPHLPTDMSQKGVHRPQSQDISGFYSLPQGG
VGQMPPSMGWQSQPVYPLSSCGFRQPYSSSLPNSSSYPRFSHSLMLGPGMHSTGIPHPAI
VPPSGKQDHYDRNVYAKPHQEPKREKEPKKPVIKKPLNAFMLYMKEMRAKVIAECTLKES
AAINQILGRRWHALTREEQAKYYELARKERQLHMQLYPSWSARDNYEAGLREGAGEKNKA
DWGKKKRRKREKQQDSTTDPGSPKKCRARFGLNQQTDWCGPCRRKKKCIRYLQGGWCASP
TSSDGSAIDSPPSPVDGVPLSTPPCPARPRLLPPHTSLCTPSPANNTHPVSSQNPRPQNS
LSKL
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgcctcagctcagcagcggcggaggagatgatctcggagcgaacgatgaaatgatatcc
tttaaggatgaaggcgatcaagatgagaaaattcaagaaaacgctttcacagaaagggac
ttagctgacctcaagtcgtctctggtgaatgaatccgagacgaatcaaagtccgaacgca
gcggcggtcagacggggacagcaaaacgaacacagaggttatcaagagaaacaccgggag
catctcgacggcgtttccaaacatcaagatggaggaatgtacaaaacagcgtatccgggg
tacccgtttctcatgctgcctgacccatacatccccaacggatccatgtccccatcttcc
aacaaagtttcagtggtccagcaatctcacgggatgcaccccctgacgtccctgttgccg
tacagcaatgaccacttcaaccccagcccccctcacctgcccacagacatgagccagaaa
ggcgttcacaggccccagtcccaggacatctcaggcttctactccctacctcagggcggt
gtgggacagatgcccccctccatgggctggcaaagtcagcctgtctatcccctgtcctca
tgtggattcagacagccctactcctccagtctccccaacagctcttcctaccccaggttc
tctcactctctgatgctagggccaggcatgcactcaacagggatcccccatccagccatc
gtgccaccttcaggcaaacaggaccattacgacaggaacgtgtacgctaagccacaccag
gaacccaagcgggagaaggagcctaagaagccagtgatcaagaagcctctgaatgctttc
atgctgtacatgaaggagatgagggccaaggtgatcgctgagtgcacgctgaaggagagc
gctgccatcaaccagatacttggcagaaggtggcacgctctgacccgggaggaacaggct
aaatactatgagctggccaggaaggagcggcagctacacatgcagctctaccccagctgg
tctgccagagacaactacgaggcgggccttagagagggcgcgggggaaaagaataaagct
gattggggcaagaagaagagaagaaaaagagagaagcagcaggactccaccacagaccct
ggctctcctaagaaatgcagagctcgcttcggcctcaaccaacaaacggactggtgtggt
ccctgcaggaggaaaaagaagtgcattcgataccttcaaggaggatggtgcgccagcccc
acttcttccgatggaagcgctatagactcgcccccctcccccgtcgacggcgtccccctc
agcacccctccctgcccagctcgccctcgcctgcttccccctcacacatccctctgcacc
cccagcccagcaaacaacacacaccccgtatcctctcaaaacccaagaccacagaactct
ctctcaaagctttaa
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