Oncorhynchus tshawytscha (Chinook salmon): 112258278
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Entry
112258278 CDS
T05605
Symbol
xpc
Name
(RefSeq) DNA repair protein complementing XP-C cells
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
112258278 (xpc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
otw03400
]
112258278 (xpc)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
112258278 (xpc)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Motif
Other DBs
NCBI-GeneID:
112258278
NCBI-ProteinID:
XP_042155236
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Position
LG16:complement(50707346..50726727)
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AA seq
926 aa
AA seq
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MVNSVIHDSVCNTIKTKVHDYIWNEASMAKRKESADTTVKTDTKKPKKVAKGKAGGPRAK
KENGEETEKVQRKAKHKSRLSKPIVGDTAETNTSKYFQDETPVKEESADMSPETDLIPHF
IRARKDTVKPVKEEEEEDSEEDEDWEEVEELSEPLGPVEPALPSQPVEIEIETPDIIHKR
QKREKRKAEFETYLRRMMNRFNKDVVEDTHKVHLMCLLANGMFRNRLCSTPDLLAISLSL
LPTHFTMVAKERIDTNYLSGLLKWFGATFTLNPELPCEERPDPQALLERRLGSLTARDHQ
EMTHLFLLVLRSLQLFCRLVLSLQPLSLKPPSAKSKAKNSGSPPRKSTSQKKPPKESPSE
PKVSPGSKRPAGGKAERGGKKAKKKEAGEMEKAVSVGQKPKNSKRRSIASKVSYKEESSE
GEGPSDGEEFQLVDEEDSEDSEGGAKAIRAKKVKGGKSKSTAPQKISSGGKKKVKSEEED
DDDWEGNEEEGEEEQGMKRGKRKEGKGADEWLEVYLEKTGCWVCVEVLQGVGQPQLCSKQ
ATHPMTYVVAVDGDGHLKDLGSKYDPTWMTSTRKRRVDEEWWEVTLEPFLGPESERDVQE
DKELQAKLLDKPLPTSIAEFKNHPLYALKRHLLKYEALYPSTAAILGYCRGEPVYSRDCI
HTLHSRDTWLKEARTVRLGEEPCKMVRGFSNRSRKVRMASEQKDKDDLALFGEWQTEEYQ
PPVAVDGRVPRNDFGNVYLFKPCMQPVGCVHLRLPNLQRVAKKLDMDCAAAVTGFDFHGG
YSHAVTDGYIVCEEHEEILRAAWAEDQEIQRQKEKEKREKRAVANWTLLVKSLLIRERLQ
RRYGKKGPTPAGGLDQLKSQDREGVEGLSSDEEGEGGPNTASAALAQAWPQNRQGEQDSG
TGGASKTTSKRQKRGQEKHLFPFEKV
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atggtaaactcagtcattcacgattctgtctgcaacactattaaaacaaaagtacacgat
tacatttggaacgaagcgagcatggccaagcgtaaagagtctgcagacacaacagtgaag
accgacacaaagaagccgaagaaggttgcaaaaggcaaagctggaggaccaagagccaaa
aaagagaatggagaggaaactgagaaggttcagagaaaagccaagcacaaatcccgtctc
tctaaacctatagtaggggacacagccgaaaccaacaccagcaaatacttccaggacgag
actccagtgaaggaggagtctgctgatatgagtcctgagactgatctcatccctcatttt
atcagagccagaaaagacacagtaaagcctgtgaaagaagaagaagaagaggacagcgag
gaggatgaagactgggaggaagtggaagagctgtctgagcccttaggtccagtagagcca
gccctgccctcacagcccgtggagatagagattgagaccccagacatcatccacaagagg
cagaaaagggagaagaggaaggcggagtttgagacctatttgcgacgcatgatgaaccgc
ttcaacaaagatgtggtggaggacacacacaaggtccacctcatgtgtcttctagccaat
gggatgttccggaaccggttgtgtagcacaccggacctgctggccatcagcctgtctctg
ctgcccacccactttaccatggtggccaaggaacgcattgacaccaactacctctctggc
ctgctcaagtggtttggggcgacgttcacgctcaacccggagcttccctgtgaggagagg
cccgacccacaggccctgctggagaggaggctgggcagcctcaccgctagagaccaccag
gaaatgacacatctgttcctattggtgctgaggtcgttgcagctcttctgtcgactggtg
ctctctctgcagcccctgtcactgaagcccccgtcagccaagagcaaggccaagaactca
ggcagcccgcctaggaagagtacatcgcagaagaaacctccaaaagagagcccctcagag
cccaaggtatccccagggtccaagagaccggcaggggggaaggccgagagaggagggaag
aaggcaaaaaaaaaagaggcaggggagatggaaaaggctgtgtcggtgggacagaaaccc
aagaactccaagcgccgcagcatagcctcgaaggtgagctacaaagaggagagcagtgaa
ggggaggggccaagtgatggggaggagttccagctggtggatgaggaagacagcgaggac
tctgagggaggagccaaagcaatccgagccaagaaagtaaaaggaggtaagagcaagagt
acagctccacagaaaataagtagtggaggcaagaagaaagtgaagagtgaagaggaggat
gacgacgattgggaggggaacgaagaggagggggaggaagagcagggcatgaagcggggc
aagaggaaggaggggaagggtgcagacgagtggctggaggtgtacctggagaagactggg
tgctgggtctgtgtggaagtgctgcagggcgtggggcagcctcaactgtgctccaagcag
gccacccatcccatgacctacgtggtagccgtggatggggacggtcacctgaaggatctg
ggcagcaagtacgaccccacctggatgacctccaccagaaagcgccgggtggacgaggag
tggtgggaggtgacgctggagccattcctcggccccgagtctgagagggacgtccaggag
gataaagagctccaggcgaagttgctggacaagccgttgcccacgtcgatagcagagttc
aaaaaccacccgctgtacgccctgaagagacatctactgaaatatgaagctctctacccc
tccacagcggccatcctcgggtactgcaggggagagcctgtctattccagggactgtatt
cacacgctacactcccgagacacctggctgaaggaggcgcgcactgtccgtctaggagag
gagccctgcaagatggtgagagggttttccaatcgctctcggaaagtcaggatggcatca
gagcagaaggacaaagatgacctggctctgtttggtgaatggcagacagaggagtaccag
cccccagtagctgtggatggcagggtgcctcgtaacgacttcggcaacgtttacctgttc
aagccctgcatgcagccagttggctgtgtccacctgcgtctgcctaacctccagagagtg
gctaagaagctggacatggactgtgcagctgctgtcactggctttgactttcacggtggc
tactctcatgctgtaacggacggctacattgtgtgtgaggagcatgaggagatcctgaga
gcagcctgggcagaagaccaagagatacagagacaaaaggagaaagagaagcgggaaaag
agggcagtggctaactggactctgctggtgaagagcctgctgatcagggagagactacag
cgtcgctatgggaagaaaggcccaacacccgcaggaggcctggaccaactgaagagccag
gatagggaaggggtagagggtctatcgtctgacgaggaaggggaaggtgggccgaacacg
gcttctgccgcactggcacaggcctggccccagaacagacagggggagcaggacagtggc
acggggggagcctccaaaacgacatccaaacggcagaaaaggggccaggaaaagcacctt
ttcccctttgagaaagtatga
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