Oncorhynchus tshawytscha (Chinook salmon): 112258427
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Entry
112258427 CDS
T05605
Name
(RefSeq) thyroid hormone receptor alpha isoform X1
KO
K05547
thyroid hormone receptor alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
112258427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112258427
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
otw03310
]
112258427
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
112258427
Nuclear receptors [BR:
otw03310
]
1. Thyroid hormone like
1A. Thyroid hormone receptor (THR)
112258427
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
112258427
NCBI-ProteinID:
XP_024288557
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Position
LG09:complement(66154136..66263319)
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AA seq
416 aa
AA seq
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MEPISNVEDPNSSEGDEKRWPDGPKRKRKNSTCSVKSMSALSLSVQGYIPSYLEKDEPCV
VCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPAYSCKYDGCCIIDKITRNQCQLCRFRK
CIAVGMAMDLVLDDSKRVAKRRLIEENREKRKKDEIVKTLQTRPEPDSSEWELIRHVTEA
HHHTNAQGSHWKQKRKFLPEDIGQSPGVPTPDGDKVDLEAFSEFTKIITPAITRVVDFAK
KLPMFSELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLSGEMAVKREQLKNGGLGV
VSDAIFDLGKSLAQFNLDDSEVALLQAVLLMSSDRSGLTSVDKIEKCQETYLLAFEHYIN
HRKHNIPHFWPKLLMKVTDLRMIGACHASRFLHMKVECPNELFPPLFLEVFEDQEV
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atggagcccatttccaacgtcgaggaccccaactcatcagagggagatgagaaacggtgg
cctgatggcccaaaaaggaagagaaagaacagcacatgttcggtgaagagcatgtctgca
ctgagtctctctgtccaaggatacatccccagctacctggagaaggatgaaccgtgtgtg
gtatgtggagacaaggccaccggctaccattaccgctgcatcacctgcgagggctgcaag
ggtttcttcaggcgcaccatccagaagaaccttcacccggcttactcctgtaagtacgat
ggctgctgtatcatcgacaagatcacaaggaaccagtgccaactgtgtcgcttcaggaag
tgcatcgcagttggcatggccatggacttggtgctggacgactctaagcgggttgccaag
cggcgtctgattgaggagaaccgggagaagaggaagaaagacgagattgtgaagacactg
cagacccgtccggagcccgacagctcggagtgggagctgattcgccatgtgacagaggcc
caccaccacaccaacgcgcagggctcccactggaaacagaaacgcaagttcctgcctgag
gacataggtcagtcccccggggttcccaccccagacggagacaaggtagacctggaggcc
ttcagcgagttcaccaagatcatcacccctgccatcacacgcgtcgtcgactttgccaaa
aaactgcccatgttctcagagctgccttgtgaggaccagatcatcctattgaaaggctgc
tgtatggagatcatgtcgctgcgtgccgccgtgcgctatgacccagagagcgagacgctt
accctgagcggcgagatggcggtgaagagggagcagctgaagaatggcgggctgggcgtg
gtgtcggacgccatctttgatttgggcaagagtctggcacagtttaacctggacgactcc
gaggtggccctgctgcaggctgtgctcctcatgagctcagatcgctcgggcctgacgtcg
gtagataagatcgagaagtgccaggagacgtacctgcttgccttcgagcactacatcaac
caccgcaagcacaacattccccacttctggcccaagttgctgatgaaggtgacggacctg
aggatgatcggggcgtgccacgccagccgcttcctccacatgaaggtggagtgtcccaac
gaactcttccctccgctcttcctggaggtcttcgaggaccaggaagtatga
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