Oncorhynchus tshawytscha (Chinook salmon): 112258560
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Entry
112258560 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: protein CASC3-like
KO
K14323
protein CASC3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112258560
03015 mRNA surveillance pathway
112258560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112258560
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112258560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
112258560
NCBI-ProteinID:
XP_042183266
LinkDB
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Position
LG09:70737781..70755335
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AA seq
776 aa
AA seq
DB search
MISKMADRRRRRRRASQDSEEDDESGSGSESGKSLSPTTKPRVRDPEPVEAPAVRVVPKN
DAESECESEDGVGEAVLSDYESADPEENASHSEGGEEEEEEEEVPPPAAGPKPSPTADTP
AAEGELQEGGGKVEEGEKGLSKEVKCEDKGNLAGERQSGDGQESTEDSENKGAKPGQKLD
DDQDRNNPAYIPRKGMFFEHDVRGNAQEEERPKGRNRKLWKDEGRWEHDRFREEEQAPKS
REELVAIYGYDIRNGGVSNERSYRQRKPRHSTSPVRDKRWRDGDGERPIHTSWQQGGNPN
SRSTPLAVALQQSGPXPLSSPQHPAQQQPPRPSSHPPPRGFQGNRPQAQYRNDRNQESQR
PGPKAEPLQTRSLPPMDGERGPRGRGNRGAHTEHSSSVVVEEIRSEEDDERNTTVTTSQS
VYHNRHYSGKGDRERDSAPRRQEQQRGGSAPPADNPVTRDASPAPERPVEKKSYSLARRT
RTRATELDKQASLEEPASTVSSSALTSEPWQGPSQSQGDAGDSSQATVLTGLDQDLARLS
LAGQNWAQNPTSFLRAEMRGIPNSMHMGGAPPQYSNIEELGAGNRAKRYSSQRQRPSPEP
APPMHIGVMESHYYEPMSYQGPIYAHGDSPAPLPPQGMLVQPEMHLPHPGHPGHPGLHPH
QSSGPMPNPALYAAPPVSMSPGQPPPQQLLAPPFYPPPGVMTFGNTNYPYPAGATLPPMY
NPPAQSQVYGQSQVYGGVTYYDPMQQQAQPKPSPPRRSSQPVTVKPPPPEVGYGPE
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgatttctaagatggcggaccggcgacggcgaaggaggcgcgcgtcccaggatagcgag
gaggacgatgaatctggttcgggatcggaaagtggaaagtccctttcgccaacgacaaag
ccccgagtacgggatcctgagccagttgaggcaccagctgttcgtgtggtgccgaaaaac
gatgctgaatccgagtgtgaaagtgaagatggcgtaggagaagctgtcctttctgactat
gaaagtgcagatcctgaggagaatgcctcacattcagagggaggtgaggaggaagaggag
gaggaggaggtccctccaccggctgctgggcccaaacccagtcctactgccgacacccct
gctgcagagggggagctgcaggaaggaggggggaaggtagaggagggtgagaaaggtttg
agtaaagaagtgaagtgtgaagataaaggcaacctggcaggggagaggcaaagcggggat
ggacaggaaagcacagaagactctgagaataaaggtgctaaaccaggccagaagctggat
gatgaccaggatcgtaataacccagcctatatcccccgtaagggaatgttctttgagcac
gacgtcagaggaaacgcacaggaggaggaacggccgaagggtcgtaacaggaagctgtgg
aaggatgagggtcgctgggaacacgataggttcagggaggaggagcaggcgcccaagtca
cgtgaggagctggttgcaatctacggctatgacatccgcaacggaggtgtctccaatgag
cggtcctatagacagcgcaagcccagacacagcacctctccagtccgggacaagcgctgg
cgggacggagacggggagaggcccatccatacctcctggcagcagggagggaaccccaac
agccgtagcactcccctagccgtggccctgcagcagtctggtcctncccccctcagcagc
ccccaacacccagcgcaacaacaaccccctaggccctcctcccaccccccaccccggggc
ttccagggcaaccgcccccaggcccagtacaggaatgacagaaaccaggagtctcaacgg
ccaggccccaaggccgagcccctccagacccggagcctaccgcccatggacggggaacga
ggccccaggggccgggggaacagaggggcccatacggagcacagctcttcggtagtggtg
gaagagatccgcagtgaggaggatgacgagcgcaacacgacagtgacaacgtctcagtcc
gtctaccacaatcgccactacagtggcaagggagatcgagaaagggactctgcaccacgg
cgacaggagcagcagcgagggggatctgctcctccggcagacaacccggttacccgcgat
gcctccccggctccggagcggcccgtggagaagaagtcgtactccctagccaggaggact
cgcacccgggccactgagctggacaagcaggcctctcttgaggagcctgcctccacagtg
tcttcctcggcactgacaagtgagccgtggcagggccccagtcagagccagggggatgct
ggagacagtagccaggcaacggtactcacagggctggaccaggacctggccagactaagc
ctggctggacagaactgggcccagaacccaacttcgtttctacgcgctgagatgaggggc
atccctaactctatgcacatgggtggagcacctccacaatacagtaacatagaagagctg
ggagctggtaaccgggcaaagcggtactcgtcccagcgccagaggccaagcccggagccc
gctcctcctatgcacataggggtcatggaaagccactactacgagcccatgtcttaccaa
ggaccaatctatgcccatggcgacagccccgcccccctcccaccccagggtatgctggtc
cagcctgagatgcacctcccccacccaggccatccaggacacccaggtctacacccccac
cagtcgagtggccccatgcccaacccggctctctacgctgctccccccgtctccatgtcc
cctgggcagccccctccacagcagctgctggccccgcccttctaccctccgccaggtgtc
atgacctttgggaacaccaactatccctacccggcaggagccaccctgccccccatgtac
aacccgccggcccagtcgcaggtgtacggccagtcgcaggtgtacgggggggtgacgtac
tacgatccaatgcagcagcaagcccagcccaaaccctcgcctccccggcgctcctcccag
cccgtcaccgtcaaacctcccccaccagaggtagggtacggcccggagtga
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