Oncorhynchus tshawytscha (Chinook salmon): 112258573
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Entry
112258573 CDS
T05605
Symbol
prf1.3
Name
(RefSeq) perforin-1.3 isoform X1
KO
K07818
perforin 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04210
Apoptosis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
112258573 (prf1.3)
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Gene cluster
GFIT
Motif
Pfam:
MACPF
C2
Motif
Other DBs
NCBI-GeneID:
112258573
NCBI-ProteinID:
XP_024288783
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Position
LG09:71106846..71110986
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AA seq
558 aa
AA seq
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MPVNLLLFLLFLPVCHGCHTGSFTDCQKAPFVPGHNLAGEGFNIVKMQTTGAFVVDVRKF
MVGGHDGNCTLCTNTLMAGQVQKLPLSVLDWRTKVKCRRSLSSQMYESSISVLKETTNAA
SISWKVGLGIKGIAGVAVGGTHSKTAMFARGHSTNDKFSFTSHEFKCKYYTFRIRTQPPL
SQEFHDSLKNLPSTYTHKTNPAYSQFISIYGTHYIRNVHLGGRVHSTTAIRTCKMAMSGL
SLHSVSNCLGVEASGTIKGVTISAETKYCKSLSNKLKTGVSFGATFSDRVTEVQGGNVEV
EDILFNPDKKSGYKTWLKTLKKVPGVVSYQLSSLHFLARDNHILKANLRNAIREYIQNNS
VSTSCPSACKTGRRNKGCACICSGHRNVDSNCCPSKPGVARMNVTVVRATGLWGDYFSKT
DGYVKVLYGKQGDSTPVIWNSDFPYWNYRIQYGTVDLKSKQTLRFEVWDRDNRWNDDLLG
KGSITPQRGMNVNQSFKLKHGTFYVSLSVVCGPSLKGAFCDQYAPSPGSQGRLSYVHDWD
RATETLPTLFQGSHRTFL
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtcaaccttctactcttcctcctcttcctccctgtgtgtcacggctgccacact
ggctccttcaccgactgccagaaggctccgttcgtccccggccacaacctggccggagag
ggtttcaacatcgtcaagatgcagaccaccggcgcctttgtggtggatgtgcggaagttc
atggtgggtgggcacgacggtaactgcaccttgtgcaccaacactctgatggccggccag
gtccagaagttaccgctctccgtactggactggcgcacaaaggtgaagtgtcgtcggagc
ctcagcagccagatgtacgagtcgagcatctccgttctaaaggagaccactaacgctgcc
agcatcagctggaaggttggcctgggaatcaagggcattgctggggttgctgttggaggc
acacactccaaaactgccatgttcgccagaggccactccaccaatgacaagttctctttt
accagccatgaattcaaatgcaaatattacacctttcgcatccgaacccaaccccctctg
agccaggagtttcatgactccctaaaaaacctgcccagcacgtacactcacaagaccaac
cctgcctacagccagttcatctccatctatggcacccactacatccgcaacgtgcacctg
gggggccgggtgcactccaccacagccatacgcacctgtaagatggccatgagcggcctc
tccctccattctgtcagcaactgtctgggggtggaagccagtggcaccatcaaaggtgtc
acgatcagtgccgagaccaagtactgcaagtccctgagcaataaactgaagacaggcgta
agcttcggagccaccttctcggaccgcgtcaccgaagtgcagggcggcaacgtcgaggtt
gaggacatcctcttcaaccctgacaagaagtctggctataaaacctggctgaagaccctg
aaaaaggtccctggtgtggtctcctaccagctcagctccctgcatttcctggccagagac
aaccacatccttaaggccaacctgcgcaatgccatcagagagtacatccaaaataactct
gtgtccacctcctgcccttctgcttgcaagacagggagacgcaacaaaggctgcgcctgt
atctgtagcggtcacaggaatgtggactccaactgctgccccagtaaaccgggcgtggcc
aggatgaatgtgacggtggtccgagctacggggctctggggcgactacttctctaagaca
gatggctatgtcaaggtcctctacggaaagcaaggcgattccactcctgtgatctggaac
agtgacttcccctactggaactataggattcagtatggaacagtggatttgaaaagtaaa
caaaccttgcgctttgaggtgtgggaccgcgacaacagatggaacgatgacctgctagga
aagggctccataacccctcaaaggggcatgaacgtcaaccaaagtttcaagttgaaacac
ggcacgttttatgtctccctgtctgtggtttgcggccccagccttaaaggagctttctgt
gatcagtacgccccctcacctgggtcccagggtaggctgagttacgtccatgactgggac
agagcgacagagacgttacccaccctcttccagggttctcacaggaccttcctgtga
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