Oncorhynchus tshawytscha (Chinook salmon): 112258695
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Entry
112258695 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: trinucleotide repeat-containing gene 6B protein
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112258695
03036 Chromosome and associated proteins [BR:
otw03036
]
112258695
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112258695
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Gene silencing
piRNA pathway
112258695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_occluded
RRM_1
Motif
Other DBs
NCBI-GeneID:
112258695
NCBI-ProteinID:
XP_042184365
LinkDB
All DBs
Position
LG01:85336654..85391140
Genome browser
AA seq
1953 aa
AA seq
DB search
MLVWGKVVNMLVWGKVVNMLVWGKVVNMLVWGKVVNMLVWGKVVNMLVWGKVVNMLVWGK
VVNMLVWGKVVNMLVWAEEIKEYQEREQXFMEDKKRKKEDKRKREASQKVAEQKNKVPEL
TKPSSTQSPAAPSSASPSPGPTPSASPSPATAAAGVAPPQGGNNAKRPAVANGQPPAAGT
QASQRYMPREVPPRFRCQQDHKVLLKRGQPPLSSMLLGGGTGGGGDCPNATMAAASDSSP
GYVGPAAPSLPLTSSSSSIAASSTTSNYANSTWGVGSGSLPSSQGREKVIVDGSDLEEWP
SIAVGDGNGAGGGEASGTGSGSASSGEGGGGVPNSSASRKGGDPGSPPSPTSSFSMPNEC
MLSVSVVWGSAASQGPPGASVPSIPKASPLPMGPDGSLGGSGVIPGANFNPNANPSAWPA
LVQQDGAGVASSEGGPPPSLLQSLAGSLSAPGLGNPPLAVNQSAHQHQLHQMQSRDREHT
SDGGWGGAALETGAGPKNEGTGVGADTDCGGGGNGGENLAASQTSSSSWGGQPFPAANSK
TGASRTDGWEGGAAEGGGGSGWKYSAQGGNGGKSWGAGSGGSTQTPGVSQGGGAGGSSVG
DWGGNSGGMGGGGNPGGEAGGVGGRSSSSSSSGGSNPPAASSSPTTSTTTTRAWDNQKGD
GVAGGTQGSGGGARVVEEVIHPAVGETPEAAAISTTGTVTTGIPTPHRPTLTWPYRQCSA
AVTWTHASSPTRAGARPRSDRTWPGTYSEVGTWGSWDEGARGDPGGRRYGWGAEEGWGDI
GCTKPHQGRWGGGGKMHPSPMPNSQTASVKGVMAPQQHSQPQQPPPQQVLEPGGGGGGGG
GWVRQPGAQHQNQSSSGWIAGPIPSGPGGGEGPESSGWEEPSPQFISRKMDIDDGTSAWG
DPSQFNKKTVNLWEKNGSPAGHQPEMQGQGAGPPTQQLQGLPALQQPGPGRQPTGMGGRD
INPGPGRQPIGMGGRDINPGPGRQPTGMGGRDIKSGKAPGMAPSSGWDGGSPSDPPVDNG
TAAWGKPTETPTGWEEPGKTTSGWGNPSPNPIKSAGSKSMQEGSWGEGDQGSVAASRHSS
WEEEEEGGGGVWSSAGSQGSSSSYNSGGWGQGHGGKKPNKAPLKSGGGDSWMNPMNKQFS
NMGLLGDDPSGRPLDLAPGPSQDKKMEGEKRGMGLNDYNGEMRKGGQRGVGGGGMVYRSP
GSKEIGPGDPGPCYDKQSLPFTNQDGCLGEEYSPPTVYKPSPLYSHTIPPRQGGHNMFGG
CGGGMPQSRHQPGVPPINTSAGIRAQVPHQYLSPQVPGSMLKQVAPPSAGVGGVGGVSGV
AGVGGGVFPPQLSPQHIAMLSGIYPPHIQFQLACQLLLQQQQNPQQLTSPQQLQQLLQNQ
RKFPQNLRQQADPQQLARIVAVLQQQRQQQGVGGGSKLSPSDLGGGGPKLSMTDSLPHPG
MGGSVDLHQKTQGYSGYGGGVNLSGLDMGGSVLGGPGGMKDMGGQQSRFKWMMEGHSPAP
SPPESLNKNGPMSTPMRRGGSPYSQYDMMGGEGLGMPLQRDNWHRTPGNKMGSKPQGPSS
WPPEFQPGVPWKGIQSIDPESDPYMTPGSMMGIPGPSSLNDTEHQLLRDNTDANPSLNTL
LPSPGAWPYSASDSPLNNAHNSAKYTEYKTSWPPEPIGHNKMWKTNRNQQSQQLPRPPPG
LTNQKQASPSRGPWQARGWGSSSGSQETRYGPGSAWSDGGTSRGSCWLVLCNLTPQIDGS
TLRTICMQHGPLLTFHLGLTQGSALIRYSTPQEAAKAQSALHMCVLGNTTILAKFVSEEE
VARYFAHSQAGGASGGQGGPTGTGAVGANSSGGSGERERDRTRGGGESSAPGGGGSSGPI
SSGWQSLDSTGGCLDTTPAQGPGLSMFAQWSSNGAGVVGGVEPSRQGLWGGMGGGGYPSS
SMWGSPAIEDPHQMGSPAALLPGDLLGGGADSI
NT seq
5862 nt
NT seq
+upstream
nt +downstream
nt
atgctggtctggggcaaggttgtgaacatgctggtctggggcaaggttgtgaacatgctg
gtctggggcaaggttgtgaacatgctggtctggggcaaggttgtgaacatgctggtctgg
ggcaaggttgtgaacatgctggtctggggcaaggttgtgaacatgctggtctggggcaag
gttgtgaacatgctggtctggggcaaggttgtgaacatgctggtctgggcagaggagata
aaggagtatcaggaaagggaacagtagttcatggaagacaaaaaaaggaagaaagaagac
aaaaggaaaagggaagcctctcagaaggttgcagagcaaaaaaacaaagtgccagaattg
accaagccctcgtccacccagtctcctgccgcccccagctctgcttcccccagccctgga
cccaccccctcggcgtccccctcccctgccaccgcggctgcaggcgtcgcccccccccag
ggtgggaacaatgcgaagcggccggcggtggccaacggacagccccccgcagcaggcacc
caggcctcccagcgctacatgccccgcgaagtgcccccgcgattccgctgccagcaagac
cacaaagtgctactgaagaggggccagccgccgctgtcctccatgctactggggggaggc
accggaggagggggagactgccccaatgcaaccatggctgctgcctcagattctagtcca
ggctatgtgggtccagctgcaccctcactgcccctcacctcatcctcctcatcaatcgct
gcttcttctactacttccaattatgcaaattccacgtggggggttggctctggcagcctg
ccctcctctcagggcagggagaaggtcatcgtggacggctcagacctggaggaatggcct
agcattgccgttggcgacgggaatggagcaggaggaggtgaagcttcggggacaggaagt
ggtagtgcttcgtcgggtgagggcggtggtggagtgccgaacagcagtgcctcgcggaaa
ggtggcgatcctggcagtcccccatcacccacttcctcgttctcaatgcccaatgaatgt
atgctgtccgtcagtgtggtgtggggatctgctgcctcacagggtcctccaggggcatca
gtgccctccattcccaaagcctcccctctgccaatgggccctgatggatcccttggtggc
agtggggtgatccctggtgccaacttcaacccaaatgccaacccttccgcctggcctgct
ctggtgcagcaggatggggctggggtagcttcctctgagggtggcccccccccttccctt
ctccagagcctggcggggtctctgtctgccccgggcctggggaacccacctctagctgtg
aatcaatccgctcatcagcaccaacttcaccaaatgcaatccagagacagagagcacacg
tcggatgggggttggggtggagcggcactggagaccggagcaggaccaaaaaacgagggg
acaggggtgggagccgatacagactgtgggggaggaggcaatggtggagagaacctcgct
gcctcccaaacctcatcctcctcttggggaggccagcctttccctgctgctaactccaaa
acgggtgcctcaaggactgatggttgggaagggggagctgctgagggtggtggaggctct
gggtggaagtacagcgctcaggggggtaatggagggaaatcctggggtgctggaagtggg
ggtagcactcaaacccccggggtatctcagggagggggtgcaggagggtcttcagttgga
gactggggaggtaattcaggtgggatgggtggaggtggaaatccaggaggggaggctggt
ggtgtcggaggccgcagcagtagcagcagcagcagtgggggcagcaacccccctgctgcc
tcttcctctccgacaacatccaccactacgacaagagcttgggacaatcagaagggggac
ggagtggcaggggggacacaggggagtggggggggggcaagggtggtagaggaggtaatt
catccagcggtgggggaaactccagaggcagcggcaatcagcaccacgggtacggtcacc
accggtattcccaccccccaccgcccaaccctgacgtggccttacaggcaatgctcagcc
gcagtgacctggacccacgcgtcctctccaacacgggctggggccagacccagatcagac
agaacgtggcctgggacctactcagaagtcggtacgtggggtagctgggacgagggcgcc
cgaggagatcctgggggcaggaggtacgggtggggggcggaggaggggtggggggacata
ggatgcaccaaaccccaccaggggcgttggggtggaggtgggaagatgcacccgtcaccg
atgccaaacagccagacggcttctgtgaaaggcgtcatggcaccgcagcaacattcgcag
ccccagcagcccccaccgcaacaagtgctggaaccgggaggaggaggaggaggaggaggg
ggctgggtgagacaaccgggtgcccagcaccagaaccaaagcagttcgggctggattgcc
ggacccatccccagtggccctgggggaggggaaggaccagagtccagcgggtgggaggaa
ccttcaccgcaattcattagccggaagatggacattgacgatgggacatcggcttgggga
gaccccagccagtttaataagaagactgtcaacctgtgggagaagaatggctctcctgct
ggtcatcagccggaaatgcagggccagggagcaggaccaccgacccaacagctgcagggg
ctaccagctctacagcagcctggacctgggaggcagcccactgggatgggaggcagggat
atcaaccctgggcctggaaggcagccaattgggatgggaggcagggacatcaaccctggg
cctgggaggcagcccactgggatgggaggcagggacatcaaatctgggaaagctccaggg
atggctccatcgtccggctgggacggtggctctccctcagaccccccggtggacaacggc
actgcagcctgggggaaacctactgagacccccaccggctgggaagaacctgggaagacc
acctctggctggggaaacccctcacccaaccccatcaaatctgcaggttcaaagtctatg
caagaaggaagctggggtgagggcgaccagggctctgtggcggcctctcgtcactccagc
tgggaggaagaggaggagggaggtggaggggtgtggagcagcgctgggtcccagggtagc
agctcttcctacaacagtgggggctggggccaaggtcacgggggcaagaagcccaacaag
gctccactgaagagtggaggaggagactcctggatgaaccccatgaataaacagttctcc
aacatggggctcctgggtgatgatcctagcgggcgacctctggacctggcccctggtcct
tctcaggataagaaaatggagggagagaagcgagggatgggcctgaatgactacaatgga
gagatgcgtaaaggagggcagagaggagtgggaggaggaggcatggtctaccgttcacct
ggttccaaagagattgggcctggcgaccctgggccttgttatgacaagcagtccttgccg
ttcaccaatcaggatgggtgccttggggaggagtactctccacccactgtctacaaaccc
tcccccctctacagccacactatcccccctagacaaggtggtcataacatgtttggcggc
tgtggtggtggaatgccccagtccagacaccagcccggtgtgccacccatcaacacgtcc
gctgggatacgagcgcaagtgcctcatcagtacctgtcgcctcaggtgccaggttccatg
ctgaagcaggtggcacctcccagtgctggcgtgggtggagtcgggggtgtgagtggggtg
gcgggtgtaggagggggtgtgttcccccctcagctgtccccccagcacatcgccatgttg
agcggcatctaccccccccatattcagttccagctggcctgccagctcctcctccagcag
cagcagaacccccagcagctcacctcaccacagcagctacaacagctcctacagaaccag
agaaagttcccccagaacctacgccagcaggccgacccccaacagctggccaggatcgtg
gctgttctccagcagcagaggcaacaacagggtgtcggagggggctccaaactatcaccc
tctgacctgggaggaggaggccccaaactgtctatgactgactccctgccccatccaggc
atgggtggctctgtggacctgcaccagaaaacacagggctactctggctatggtggagga
gtgaacctgtctggtctggacatggggggctcggtgttgggaggcccaggggggatgaag
gacatgggggggcagcagtcccgcttcaaatggatgatggagggtcactctcctgccccc
tcccctcctgagagcctcaacaaaaacggtcctatgtccacccctatgagaagggggggc
tctccatactcccagtatgacatgatgggaggggaggggctaggcatgcccctccagagg
gacaactggcaccgtactcctgggaacaagatgggctccaagccccagggcccatccagc
tggcctcctgagttccagcctggcgtgccctggaaggggatccagagcatcgaccccgag
tctgacccctacatgaccccagggagcatgatgggaatccctggaccatccagcctcaat
gacaccgagcaccagttgctaagagacaacacagatgccaacccctccctgaacaccttg
ctgccttcacctggtgcctggccctacagtgcctcagacagccccctcaacaacgcacac
aactcagcaaagtacacagagtacaagaccagctggccccctgagcccattggacacaac
aagatgtggaagaccaatcgcaaccaacagtcccagcagctgccacgcccacccccggga
ctcaccaatcagaagcaggcctcaccgtcccgtggcccgtggcaggcccgtggctggggc
agctcgagcgggagccaggaaaccagatatggccctggctctgcttggagtgatgggggg
acctccagaggaagctgctggctggtgctctgcaatctcactccacagatcgacggctcc
accctccgtaccatctgtatgcagcatggccccctgctgacctttcaccttggcctgacc
cagggcagcgctctgattcgctacagcaccccacaggaagctgcgaaggcccagagcgca
ctacacatgtgtgtactgggcaataccaccatcttggccaagtttgtgagcgaggaagag
gttgctcgctattttgcacattcccaggcgggaggggccagcggaggccagggggggccc
acagggacaggtgcagtgggggccaatagcagcggagggagtggagagagggaacgagac
agaaccagaggaggaggagagagctctgcccctggaggaggcggcagctcagggcccatc
agctctggctggcagagtttggacagtacaggaggctgcctggatactacccctgcccag
gggcccggcctgagcatgtttgcccagtggagcagcaacggtgctggggtggttgggggt
gtggagcccagcagacagggtttgtggggagggatggggggtggtgggtaccccagcagt
agtatgtgggggtcccctgccatagaggatccacaccagatggggagtcctgctgctctg
ctgcctggagacctgctaggaggaggggctgattccatctga
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