Oncorhynchus tshawytscha (Chinook salmon): 112258791
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Entry
112258791 CDS
T05605
Name
(RefSeq) neurogenic locus notch homolog protein 2-like isoform X1
KO
K20995
Notch 3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04330
Notch signaling pathway
otw04371
Apelin signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
112258791
04371 Apelin signaling pathway
112258791
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
EGF_CA
Ank_2
Ank
EGF_2
Notch
NODP
NOD
Ank_3
Ank_4
Ank_5
EGF_3
DL-JAG_EGF-like
Plasmod_Pvs28
cEGF
PepSY_TM
Motif
Other DBs
NCBI-GeneID:
112258791
NCBI-ProteinID:
XP_042183429
LinkDB
All DBs
Position
LG09:77754879..77802298
Genome browser
AA seq
2475 aa
AA seq
DB search
MGGNYKVWIFLAMLFLVHNCEGFRCVDKYRPCDNGGTCIDSPSRCICRPGYIGPLCQSLD
PCHRSPCLNGAACKSQVANGMPQFTCVCQRGFRGQDCSLIDACATSPCANGARCASWNNH
YNCSCPPGFQGKNCRNDIDECRKSGACLNAGLCMNTHGSFRCQCPPGYSGRTCEVSSLPC
APSQCINGGTCRPTGDHTYDCACLPGFEGHNCETNVDDCPGHRCMNGGLCVDGVNTYNCQ
CSPEWTGQYCAEDVNECLMQPNACHNGGTCFNTIGGHTCVCVNGWTGDDCSENIDDCATA
VCFNGATCHDRVASFFCECPVGKTGLLCHLDDACVSNPCNEGAVCDTNPLNGRAICTCPA
GFVGGACNQDMDECSIGANPCEHFGKCVNTEGSFQCQCGRGYAGPRCEIDINECLSMPCQ
NDATCLDRIGEFTCICMPGYMGTYCEVDVDECESNPCVNDGICRDMVNGFTCTCQPGFTG
TMCQIDIDECASTPCQNGAKCYDRPNGYECRCAEGYEGTLCESNTNNCQPDPCHHGTCVD
GIASYTCNCEAGYTGYRCENQLNECHSNPCQNGGKCVDLVNKYICQCQHGTSGTNCEINF
DDCASKPCDYGICKDGINRYDCVCKPGFTGPLCNVEMDECSSGPCRNGGTCVDEENGFHC
QCPEGFQPPYCYSQVDECGSNPCVHGACRDDINGYRCDCEPGWVGKNCDLDRNDCLPSPC
QNAGTCIDQLNGFTCKCRQGFRGNLCQVNINECSSSPCLNQGTCVDGVASFTCLCELPYS
GPTCADVLTPCSPNPCANHALCTNTPDYLGYQCNCQQGWQGQLCNIDVNECIANPCKNRG
TCTNTLGGFVCSCRGGFTGPNCETDINDCAPSPCLSGGSCTDGVNSFHCSCLPGFTGPRC
AVEVNECQSAPCKNGDTCTDYVNSYTCTCRPGFTGINCETNIPDCTESSCFNGGTCTDKI
NGYSCTCRSGFTGSHCQYEVNECDSQPCLNGGVCQDALESFRCSCPKGYTGNRCQMPVDW
CRRSSPCQNGGRCRQKDASFSCECLGGWSGRYCDIPGVSCEVAALKRGLQTDELCHHGGH
CVNTGNTHYCKCPTDYTDSYCESQVDHCEDKHCRNGATCRGYVGGYQCDCMPGYTGENCE
MEVNECQSHPCQNGGTCIDLVGHYICSCPPGTLGVLCEINEDDCAPPLRLRGTPPKCLNN
GTCVDRVGGYRCNCPPGFTGERCEGDINECHSNPCSPANSLDCIQLPNDYQCVCKPGFTG
RRCQSRFSVCESQPCQNGGACSVSSSSALGYACTCQLGYAGNNCERSMLCRELSCYNGGS
CALTTRGARCTCLTGYAGPQCQHRSNEGCSSQPCRNGGICTEETSFPFFLCQCAQGWTGK
RCEQGSTRLIETLLPPACPLADCHGKANDGVCDKECNTFPCRWDGSDCSLAVNPWARCTD
PRCWRVFNNSQCDESCNNANCLYDNFDCKSKEKICNPIYEAYCIDHYADGRCDQGCNSEE
CGWDGLDCAGKVPENLADGVLVLVVLLPPDELVNTAPAFLQKLSAILRTTLRFRLDHNGE
PMIRPYTRREARLKRELQPHQEVIGSIVYLEIDNRLCSQRSDDCFPSADSAADYLGALSA
VEMLHFPYHIKEVRGEKIQESVDMPEWGKLMLVGVAALFLLVILVVGVLIGRRKREHSTL
WFPEGFFPKKEPSSNKNRREPLGQDALGMKYMPRTVEESLLGDHSDSWIDTDCPEAKRLK
VEEPSILSDSEDTVDCRQWTQHHLAAADIRMPPSMALTPPQGEFDQDCMDVNVRGPDGFT
PLMLASFCGGGLEPELPEEEESEECSANIISDLIYQGATLAAQTDRTGETALHLAARYAR
ADAAKRLLDAGADANAQDNTGRTPLHAAVAADAQGVFQILIRTRATDLDSRMYDGSTALI
LAARLAVEGMVEELITCHADINAVDELGKSALHWAAAVNNVEATMALLKNGANKDMQDLK
EETPLFLAAREGSCEAVKVLLAHFANREITDHMDRLPRDIAQERMHHDIVQLLDEYNTVR
SPQGHGGAPHHLAGGHTLSPLMCPPSAFMPGLKNTPQGKKSRRPGAKGSGLGGQHVQNLK
DSAKARNKKLTLDMQSALLESSVTLSPVDSLDSPRGGANNAGYITNPCSPVAMPSSGLFH
SSMSVPSTPMVHSSMMDGSGPFAVSLAQLNDLGDGGMSMQGRVSMASQVNQGPHGYVLNA
GQLGLNMGLVSPVSVPFDWHSRMPSSSQCGGQVVNLVHSSQAGMHPQSPMQQQQNSLMMQ
QHQQHQQHLYRSAQQAMLQPTPVIASTPISLSPVKLPSIAEQQLHNHSMASQQSLRMGTS
SPSTPQTTQPPPAFFQQQQQPPQSQPATQPTSPQASQAPPPQASGSTAGLEDYPTPPSQH
SYSSTLDATPKHYLRLSSEHPYLTPSPESPEPWSSPSPHCVSDWSDSTPSPAVAGPAQTQ
IPHVQESNGKMQVFA
NT seq
7428 nt
NT seq
+upstream
nt +downstream
nt
atgggggggaattataaagtttggatatttttagcaatgttattcttggtccataattgc
gaaggattccgctgcgtggataaatacagaccttgtgacaatggaggaacgtgcatagac
tcaccctcgcgatgcatatgtcggccggggtacatcggccctctgtgccaaagcctggac
ccctgtcaccggtcgccatgcctcaatggagccgcctgtaagagccaggtggccaacgga
atgccacaattcacctgtgtgtgtcagagagggttcagaggtcaagactgctccctcata
gacgcctgtgccaccagcccctgtgccaatggtgcccgctgtgccagttggaataaccac
tataactgttcctgcccacccgggttccaggggaagaactgccgcaacgatatcgacgag
tgccgcaagtctggcgcctgtctcaacgcaggcctctgcatgaacacccatggttccttc
cgctgccagtgcccacctgggtacagcgggcgcacctgcgaggtgtcctccctgccctgc
gccccctcccagtgcatcaacgggggcacctgccgcccgaccggagatcacacctacgac
tgtgcttgcctgccagggttcgagggacacaactgtgagacgaacgtggacgactgccca
gggcataggtgtatgaatggaggcctgtgtgtggatggagtcaacacctataattgccag
tgctcacctgagtggacaggtcagtactgtgcagaggatgtcaatgagtgccttatgcag
cccaacgcctgccataacgggggcacctgcttcaacaccatcggggggcacacctgcgtg
tgcgtcaacggctggacgggagacgactgcagcgagaacatcgacgactgtgccaccgcc
gtgtgcttcaacggcgccacctgccacgaccgcgtggcttccttcttctgcgaatgtccc
gtggggaaaaccggtctgctctgtcacctggacgacgcgtgcgtcagcaacccgtgtaac
gagggtgccgtgtgtgacaccaaccccctgaacgggcgcgccatctgcacctgtcccgcc
ggcttcgtgggcggagcctgcaaccaggacatggacgagtgttccattggtgccaacccc
tgtgaacactttgggaagtgtgttaacacggaggggtccttccagtgccagtgtggccga
ggctacgccggcccccgctgtgagatcgacatcaacgagtgtctgtccatgccctgccag
aacgatgccacctgtctggaccgcatcggagagttcacctgcatctgcatgccaggctac
atggggacctactgtgaggtggatgtggatgagtgtgagagcaacccttgtgtgaacgac
ggtatctgccgggacatggtcaacggcttcacatgcacctgccagccagggtttactggc
accatgtgtcagatcgacattgacgagtgcgccagcacgccctgccagaacggggccaag
tgttatgaccggcccaacggatacgagtgccgctgtgctgaagggtacgagggcacactg
tgcgagagcaacaccaacaactgccagcctgacccgtgccaccacggcacctgcgtggac
ggcatcgccagctacacgtgtaactgcgaggcgggctacacgggttaccgctgtgagaac
cagctgaacgagtgccacagtaacccctgccagaatgggggcaagtgtgtggacctggtc
aacaagtacatctgccagtgtcagcacggtacctcaggtaccaactgtgagattaacttt
gatgactgcgccagcaaaccatgtgactatggcatctgcaaggacggcatcaaccgctac
gactgcgtgtgcaaaccaggcttcaccggccctctgtgtaacgtggaaatggacgagtgc
tcgtccggaccctgcaggaatggggggacgtgtgtggacgaggagaacggcttccactgc
cagtgtcccgagggcttccagcctccctactgttactcccaggtggacgagtgtggcagc
aacccctgtgtgcacggcgcctgcagagacgacatcaacggctaccgctgtgactgtgag
cccggctgggtggggaagaactgtgacctagaccgtaatgactgtctgcccagcccctgt
cagaacgctggcacctgcattgatcagctgaacggattcacgtgcaagtgtcgccagggc
ttcagaggtaacctgtgccaggtcaacatcaacgagtgttcgtccagtccgtgtctgaac
cagggcacgtgtgtggacggcgtggccagtttcacctgtctgtgtgagctgccctacagc
gggcccacctgtgccgacgtgctcaccccctgctcccccaacccctgtgccaaccatgcc
ctgtgcaccaacacacctgactacctgggctaccagtgcaactgccagcaaggatggcaa
ggtcagctgtgcaacattgacgtgaacgagtgcatcgccaacccgtgtaagaaccgtggt
acctgcaccaacacactgggagggttcgtgtgctcctgccgcggcggcttcaccgggccc
aactgtgagacggacatcaatgactgtgcccctagcccgtgtctgagtgggggttcctgt
acggacggtgtgaactcgttccactgcagctgtctgccaggcttcacggggcctcgctgt
gccgtggaggtcaacgagtgtcagagtgccccctgtaagaacggagacacctgcacagac
tacgtcaacagctacacctgcacctgcagacctggcttcactggcattaactgtgagacc
aacatcccagactgcactgaaagctcatgcttcaacggaggtacctgtacagacaagatc
aacggctactcctgtacctgtcgctcaggcttcacaggctcccactgccagtatgaggtg
aatgagtgtgactcccagccctgcctcaacggaggggtctgccaggacgctctggagtcc
ttccgctgctcctgccccaagggatacacaggcaaccgctgccagatgccagtggactgg
tgcagacgctcgtctccctgtcagaacggagggcgctgtcgtcagaaggacgcctccttc
tcctgtgagtgtctgggaggctggtctggacgctactgtgacatccctggggtttcctgt
gaggttgccgcactcaagagaggcctccagacagacgagctgtgtcatcacggaggtcac
tgtgtcaacacaggcaacacccactactgtaagtgtcccacagactacacagacagctac
tgtgagagccaggtggaccactgtgaggacaaacactgtcgcaacggcgccacctgcagg
ggctacgtgggaggataccagtgtgactgtatgccgggctacaccggagagaactgtgag
atggaggtcaacgagtgccagtctcacccgtgccagaacggtggcacctgcattgacctg
gttggacactacatctgctcctgcccacctggcaccttgggtgttctgtgtgagatcaac
gaggatgactgtgctcctcctctgcggctgcgcgggactcctcctaagtgtctgaacaac
ggtacctgtgtggacagagtggggggctaccgctgtaactgtccccctggcttcactgga
gagaggtgtgagggggacatcaacgagtgtcactccaacccctgcagccccgccaacagt
ctggactgcatccagctccccaacgactaccagtgtgtctgcaagcccggcttcacaggt
cggcggtgccagagcaggttcagtgtgtgtgagtctcagccctgtcagaacggaggggcc
tgttctgtctccagcagctcagctcttggatacgcctgtacctgtcagctgggctatgct
gggaacaactgtgagaggagcatgttgtgtcgggagttgtcttgctataatggaggtagt
tgtgctctgaccacgaggggcgcccgctgtacctgcctgacaggctatgccggaccccag
tgccagcaccgtagtaacgagggctgctcctcccagccgtgccgcaacggaggcatctgc
actgaggagaccagcttccccttcttcctctgccagtgtgcccaaggctggacgggcaag
cgctgcgagcagggcagcaccaggctgatagagacccttctgccgcccgcctgccccctg
gccgactgccacggcaaggccaacgacggtgtctgcgacaaggagtgcaacacattcccc
tgccgctgggatgggagcgactgctcgctggcggtgaacccgtgggcgcgctgcaccgac
ccgcgctgctggcgtgtcttcaacaacagccagtgtgacgagtcgtgcaacaacgccaac
tgcctctacgacaactttgactgcaagagcaaggagaaaatctgcaatcccatctacgag
gcgtactgcatcgaccactacgctgacggccgctgtgaccagggctgtaactcagaggag
tgtggctgggacggtctggactgtgcagggaaggttccagagaatctggctgacggggtg
ctggtcctggtggtcctgctacccccggacgaactcgtgaatacggcccctgccttcctg
cagaagctcagcgccatcctgagaactaccctgcgcttccgcctggaccacaacggagag
cccatgattcgaccctacacccgcagagaggcgcgcctcaaacgagagctgcagccccac
caggaggtgattgggtccatcgtgtacctggagatagacaaccgtctgtgttcccagcgg
tctgacgactgtttcccttcggctgacagtgcagcagactacctgggagctctgtcagcc
gtggagatgctccacttcccctaccacatcaaagaagtccgcggtgagaagatccaagaa
tctgtagacatgccagagtggggcaagctgatgctggtgggcgtggcagccctgttccta
ttggtcatcctggtggtgggcgtgctgatcggccgcagaaagagagaacacagcaccctg
tggttccccgagggcttcttccccaagaaggaacccagcagcaacaagaaccgcagggaa
cccttaggccaggacgcactgggcatgaaatacatgcccaggacggtggaggagtctctg
cttggcgaccacagtgactcgtggatcgacacagactgccccgaggccaagagactgaag
gttgaggagcccagtatcctgtcagacagtgaagacactgtagactgtagacagtggacc
cagcaccacctagcggctgcagacatccgcatgcccccctccatggccctcaccccgccc
cagggagagttcgaccaggactgcatggacgtcaacgtccgaggacctgacggtttcacc
cctctgatgctggcgtcgttctgcggtggcggtctggagcccgagctccccgaggaggag
gagtcagaggagtgttccgccaacatcatctctgacctcatctaccagggcgccacattg
gccgcccagacggaccgcactggagagaccgcccttcacctggctgcccgctatgcccgc
gctgacgccgctaagcggctgttggacgccggggccgacgccaacgcgcaagacaacaca
gggcgtacgccgctacacgccgccgtggcagccgacgcccagggggtcttccagattctg
atccgtacccgggctacagacctggactctcgtatgtacgacggctccaccgccctgatc
ctggctgcccgcctggccgtagagggcatggtggaggaactcatcacctgccacgcagac
atcaacgctgtcgacgaactgggtaaatctgctctgcactgggcagctgctgtcaacaac
gtggaggccaccatggccctgctgaagaacggagccaacaaagacatgcaggacctcaag
gaggagacgcctctcttcctggcggcgcgtgagggtagttgtgaggcagtcaaggtcctc
ctggcccacttcgccaacagggagataaccgatcatatggaccgtctgcctcgggacatc
gcccaggagagaatgcaccatgacatcgttcagctgctggatgagtacaacacagtgagg
agcccccagggccacggaggggccccacaccacctggctgggggacacaccctgtccccc
ctcatgtgcccccccagcgccttcatgcccggcctgaagaacaccccccaggggaagaag
agtcgccgccccggggcaaagggttcaggtctgggagggcagcatgtccagaacctgaag
gattcagctaaggcccgcaacaagaagttgaccctggacatgcagagcgccctgctggag
agctctgtcaccctgtcccccgtcgactccctggactccccccgcggaggggccaacaac
gccggctacatcaccaacccctgctccccggtcgccatgccctcctctgggctcttccac
tcctccatgtcggtgcccagcactcccatggtgcacagcagcatgatggacggctctggt
ccattcgctgtgtctctggcccagctcaacgacctgggagatggaggcatgtccatgcag
ggccgcgtgtccatggccagccaggtcaaccagggcccccacggctacgtgctcaacgcc
ggccagctggggctcaacatgggcctggtgagccctgtcagcgtgcccttcgactggcac
agccgcatgccctcctcctcccagtgcgggggacaggtggtgaatctggtccacagcagc
caggcgggcatgcaccctcagagccccatgcagcagcagcagaacagcctcatgatgcag
cagcaccagcagcatcagcagcacctgtaccgcagcgcccagcaggccatgctgcagccc
acgcctgtcattgccagcacgcccatctccctcagccccgtcaagctgccatccatcgca
gagcagcagctccacaaccactccatggccagccagcagagcctccgcatgggcacctcc
tccccatccaccccccagacgacacagccccctccagccttcttccagcagcagcagcag
cctcctcagtcccagccagccactcagcccacctctccacaggcctcccaggcccctcct
ccccaggccagtggcagcactgcaggcttggaggactaccccaccccgccctcccagcac
agctactcctccaccctggatgccactcccaagcattacctccgcctgtccagcgagcat
ccctacctgaccccctccccagagtcgcccgagccctggtccagcccctccccccactgt
gtgtctgattggtcagactccacccccagcccggcggtggccggtcctgcccaaacccag
atcccacatgtccaggagtccaacggcaagatgcaggtgtttgcatga
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integrated database retrieval system
