Oncorhynchus tshawytscha (Chinook salmon): 112258840
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Entry
112258840 CDS
T05605
Symbol
rad23aa
Name
(RefSeq) UV excision repair protein RAD23 homolog A isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03420
Nucleotide excision repair
otw04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
112258840 (rad23aa)
09124 Replication and repair
03420 Nucleotide excision repair
112258840 (rad23aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
otw03051
]
112258840 (rad23aa)
03400 DNA repair and recombination proteins [BR:
otw03400
]
112258840 (rad23aa)
Proteasome [BR:
otw03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
112258840 (rad23aa)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
112258840 (rad23aa)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
Rad60-SLD
Rad60-SLD_2
Crinkler
UBA_3
Dsc3_N
Ubiquitin_2
OTU1_UBXL
Motif
Other DBs
NCBI-GeneID:
112258840
NCBI-ProteinID:
XP_042183538
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Position
LG09:79717026..79723978
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AA seq
353 aa
AA seq
DB search
MQITLKTLQQQTIQIDIDPDQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK
DYKIDEKNFVVVMVSKAKSATAASTPSSEAPKAPVQDSGSSAGPAPAAIPIPPEEPTPTV
AEPPAPASSDLSVEVQGGDASSALVTGAEYETMLTEIMSMGYERESVVAALRASFNNPHR
AVEYLLTGIPSSPVQETNPPAQLPASARTGTETPTVAEGENPLEFLRSQPQFQSMRQVIQ
QNPSLLPALLQQLGRENPQLLQQISQYQELFIQMLNEPAGEVGDVPEVGDLGAAVEEGAP
VNYIQVTPQEKEAIERLKALGFPEALVIQAYFACEKNENLAANFLLNQGFEDE
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatcacgttaaaaacactgcaacagcagaccattcaaatcgacatagacccagat
caaacggtgaaggcactgaaggagaagatagaagcagagaggggaaaagataacttccca
gtgtctggacagaagctcatatatgctggcaaaatcctgcaagatgacacacctattaaa
gactacaaaattgatgagaagaattttgttgtagttatggtatctaaggcaaagtctgcc
acagctgcttcaacaccttcctcagaggcacccaaggcccctgtccaggactctgggtcg
tctgcgggcccggcccctgcagccatccctatccccccagaggagcccacacctacagtc
gcagagcccccagctccagccagctcagacctcagtgtggaggttcaggggggggatgcc
tcctctgccttggtgacaggagcggagtatgagaccatgctgacagagatcatgtctatg
ggttatgagagggagagcgtggtagctgctctccgggccagcttcaacaacccccatcgg
gccgtggaatacctcctcactggcattcctagcagtccggtccaagagactaatccccca
gcacagcttcctgcatctgcccgcacaggcacagagacccctactgttgctgagggagaa
aaccctctggagttcctgcgttcccagcctcagttccagagcatgaggcaggtgatccag
cagaacccctcactgctgccagctctgctccaacagctgggccgggagaacccacagctc
ctacagcaaatcagccagtaccaggagctgttcatccagatgctgaatgagccggcgggg
gaggttggagacgtgcctgaggtgggggacctgggtgctgcagtggaggagggagctcca
gtcaactacattcaggtcacacctcaggagaaagaagccatcgagaggttaaaagcgttg
ggtttccccgaggcgctggtgatccaggcctactttgcatgtgaaaagaacgagaaccta
gcagccaacttcctcctgaaccagggctttgaggatgaatga
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