Oncorhynchus tshawytscha (Chinook salmon): 112258864
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Entry
112258864 CDS
T05605
Name
(RefSeq) cysteine protease ATG4D
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04136
Autophagy - other
otw04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112258864
04136 Autophagy - other
112258864
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
otw01002
]
112258864
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112258864
03029 Mitochondrial biogenesis [BR:
otw03029
]
112258864
Peptidases and inhibitors [BR:
otw01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
112258864
Membrane trafficking [BR:
otw04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
112258864
Mitochondrial biogenesis [BR:
otw03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
112258864
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
Motif
Other DBs
NCBI-GeneID:
112258864
NCBI-ProteinID:
XP_024289263
LinkDB
All DBs
Position
LG09:81007873..81014500
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AA seq
462 aa
AA seq
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MNPSSPCEGQSPEGDPPDDWFHLSTMSLGTQGSDGSRDDPEEPEERGRLKSKLVLAWNNV
KYGWSFKSKAHFSKTSPLTMLGQSYLLSHGVERECFRQAFATLLWLTYRRGFPQLDGSSL
TTDSGWGCMLRSGQMLLAQGLLLHLLPPGWTWLSANHVSKDDMEVQESRSLGPEVTKKGR
RKSIVSFLESRTEVTHRRVVSWFGDHPIAPFGLHQLVEQGTSAGKKAGDWYGPSIVAHIL
RKAVDAASAEVSNLTVYVAQDCTVYVDDVVRLCERPLSEGSTGPSPAWKSVIILVPVRLG
GEVLNTTYIKCVKNLLRLECCIGIIGGKPKHSLFFVGYQDEQLLYLDPHYSQSTVDITQD
NFPLESFHCKCPRKISFSRMDPSCTIGFFAKSQKEFELLCSTVSTALSSSTEKYPIFTIA
EGQGQEDERDAPPNSITHILTKDKARLQRTNNSNSMDEFVLL
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagttctccctgtgagggccagagccctgagggtgaccctccagatgattgg
ttccacctttccaccatgtctctgggaactcagggctctgatgggagccgggatgaccca
gaggaacctgaggagagaggcagactcaagtccaagttggtgttggcatggaacaatgtc
aaatatggctggtcgttcaagtcaaaggcccacttcagcaagacctctcctctgaccatg
cttggacagtcttatctgctcagtcatggagtggagagggagtgctttcgccaggccttt
gccactctgctgtggctgacgtacaggcggggcttcccacagctggatggttcctctctg
accacagacagtgggtggggctgcatgctgcgcagtggacagatgctgctggcacagggg
ctgctgctacacctgctgccgccaggctggacctggctctctgccaaccatgtgtctaaa
gatgacatggaggtacaggagtctcgctccttgggtccagaggtgactaagaagggaagg
aggaagagcatagtgtccttcctggagagccggactgaggtcactcacagacgggtggtg
tcctggtttggggaccatcccatcgccccgttcgggctgcaccagctggtggaacagggc
acaagcgcagggaagaaggcaggggactggtatggcccctccatcgtagcacacattctt
cgtaaggctgttgacgcagcatcagcagaggtgtccaatctgacagtgtatgtagcacag
gactgcactgtgtacgtagatgatgtggtgaggctgtgtgagagacctctatctgagggc
tccacaggacccagtccagcctggaagtctgtcatcatcctggtccctgtgcgcctggga
ggagaagtcctcaacaccacctacatcaaatgtgtcaaaaatctcctgaggttagaatgc
tgcattggaatcattggtggcaaacccaagcactctctgttcttcgttgggtaccaagac
gaacagctgctgtacttggacccccactacagccagtccacagtagatatcacacaggat
aacttccccttagagtcgtttcactgtaagtgtcccaggaagatctccttcagtcgcatg
gatcccagctgcactataggcttctttgccaagagccagaaggaatttgagttactgtgt
tcaactgttagcacggctctctcatcatcaacagaaaagtaccccatcttcaccattgca
gagggtcagggacaggaggatgagagagatgcacccccaaactctatcacccacatcctg
accaaggacaaggcgaggctgcaaaggaccaataacagtaacagcatggatgagtttgtg
ttattgtga
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