Oncorhynchus tshawytscha (Chinook salmon): 112258871
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Entry
112258871 CDS
T05605
Name
(RefSeq) E3 ubiquitin-protein ligase SMURF2 isoform X1
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04120
Ubiquitin mediated proteolysis
otw04137
Mitophagy - animal
otw04144
Endocytosis
otw04340
Hedgehog signaling pathway
otw04350
TGF-beta signaling pathway
otw04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112258871
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
112258871
04350 TGF-beta signaling pathway
112258871
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112258871
04137 Mitophagy - animal
112258871
09144 Cellular community - eukaryotes
04520 Adherens junction
112258871
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112258871
04121 Ubiquitin system [BR:
otw04121
]
112258871
03029 Mitochondrial biogenesis [BR:
otw03029
]
112258871
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
112258871
Membrane trafficking [BR:
otw04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
112258871
Autophagy
Mitophagy
Other mitophagy associated proteins
112258871
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
HECT type E3
112258871
Mitochondrial biogenesis [BR:
otw03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
112258871
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
Motif
Other DBs
NCBI-GeneID:
112258871
NCBI-ProteinID:
XP_024289273
LinkDB
All DBs
Position
LG09:81746428..81810690
Genome browser
AA seq
827 aa
AA seq
DB search
MSNQGVRRNGPVKLRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPK
WNQHYDLYIGKSDSITISVWNHKKIHKKQGAGFLGCVRLLSNAINRLKDTGYQRLDMNKL
GLNDSDTVRGQIVVSLQSRDRIGTGGPVVDCSRLFDNDLPDGWEERRTASGRIQYLNHIT
RTTQWERPTRPASEYSSPGRPLSCIVDENMPILSTNGATPTIPCVPSSDQRAQERRVRSQ
RHRNYMSRTHLHTPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLRGFTADTS
GTPSASMLSAHSLQPYCTCGSETPLTQACVFHGLPQAQRRTHINTDLSNVNCEELGPLPP
GWEIRNTATGRVYFVDHNNRTTQFTDPRLSANLHLVLNPSPNGSRSGIEIQNSPISRQIQ
LKEQAQQALVSPGNLPEEAECLTVPKYKRDLVQKLKILRQELSQQQPQAGHCRIEVSREE
IFEESYRQVMKMRPKDLWKRLMVKFKGEEGLDYGGVAREWLYLLSHEMLNPYYGLFQYSR
DDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKPITLDD
MESVDPDLHNSLVWILDNDITGVLDHTFCVEHNAYGEIIQHELKPNGKIIQVTQDTKKEY
VRLYVNWRFLRGIEAQFLALQKGFNEVISQHLLKAFDEKELELIVCGLGKIDINDWKSNT
RLKHCTPDTNIVKWFWKAVESYDEERRARLLQFVTGSSRVPLQGFKALQGAAGPRLFTIH
QIDASSNNLPKAHTCFNRIDIPPYENYDKLYDKLLTAIEETCGFAVE
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaccaaggagttcggcgaaatggtccggttaaactgcgtttaacagtcctctgt
gccaaaaacctggtgaagaaagatttctttcgcctccctgatccctttgccaaagtggtg
gtggacggctcaggacaatgtcactccacagacaccgtgaagaacaccctcgaccccaag
tggaaccagcactacgacctatatattggcaagtctgactccatcaccatcagcgtgtgg
aaccacaagaagatccataagaagcagggggctggcttcctgggctgtgtacgccttcta
tccaatgccatcaaccgcctcaaagacaccggctatcagagattggacatgaacaagctg
ggcctcaatgacagtgacacagtgaggggtcagatagtggtgagcctgcagtccagagac
aggataggcacaggaggcccagtggtggactgcagccgtctgtttgacaatgacctgcca
gatggctgggaggagcggaggactgcgtctggccgaatccagtacttgaaccacatcaca
cgcaccacacagtgggagaggcctacaaggcctgcatcggagtactccagcccgggccgg
cctctcagctgcatcgtggatgagaacatgcccatcctgagcaccaacggggccacgccc
accattccgtgtgtcccgtccagcgaccagcgggcccaggagagacgcgtccgctcccag
agacacaggaactacatgagcaggacacacctccacacacccccagacctgcccgaggga
tacgagcagaggaccacacagcagggccaggtctacttcctccacacccagacaggagtc
agcacatggcacgaccctcgagtgcccagggatctgagaggattcacagcagacacctct
ggcacgccctctgcctccatgctctcagcacacagccttcagccctactgtacatgtggc
tcagagacgccactcactcaggcatgtgtgtttcatggattaccacaggcccagaggaga
acacacatcaacacagacctgagtaatgtaaactgtgaggagctgggcccactgccccct
ggctgggagatcaggaacacagccaccggccgggtctactttgtggaccacaacaaccgc
accacgcagttcacagacccgcgcctctccgccaacctgcatctagtccttaacccaagc
cccaatggttcccgcagcggcatcgaaattcagaacagtccgatcagccgtcagatccag
ctgaaggagcaggcccagcaggcactggtgtctccaggtaatctgccggaggaggccgag
tgcctcacggtgcccaagtacaagagggacctggtgcagaagctgaagatcctccgccag
gagctgtcccagcagcagccccaggcaggccactgccgcatagaggtgtcccgcgaggag
atctttgaggagtcttaccgccaggtgatgaagatgaggccgaaggacctgtggaagaga
ctgatggtgaagtttaaaggggaggaggggctggactacggaggagtggccagggagtgg
ctgtatctgctgtcccatgagatgctgaatccgtactacggcctgttccagtactcccgc
gatgacatctacaccctgcagattaaccccgactcggccgtcaacccggagcacctgtcc
tacttccactttgtgggtcgtattatgggcatggcggtgttccacggccactacatagac
gggggcttcaccctgcccttctacaaacagctgctggggaaacccatcaccctggacgac
atggagtcagtggacccagacctccacaacagcctggtctggatcctggacaatgacatc
acaggcgtgttggaccacaccttctgtgtggagcacaatgcctacggggagatcatccag
cacgaactcaaacccaacggcaaaatcatccaggtcacccaggacaccaagaaggagtat
gtcagactgtatgtgaactggcgtttcctgcgaggcatcgaggctcagttcttggccctg
cagaagggcttcaacgaggtcatctcacagcacctcctcaaggccttcgacgagaaagag
ctggagctcatagtgtgtggactgggtaagatcgacatcaacgactggaagtccaacaca
cggctgaagcactgcacccctgacaccaacatcgtcaagtggttctggaaggccgtggag
tcgtacgatgaggagcgccgggccaggttgctgcagtttgtcaccggctcctccagggtc
cccctgcaaggcttcaaagccctccaaggtgctgcaggcccacgactcttcaccatccac
cagatcgatgccagctccaacaacctgcccaaagcccacacctgcttcaaccggatcgac
attcctccctacgagaactatgacaagctgtatgacaagctgctcactgctatcgaggag
acgtgtggctttgctgtggagtga
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