Oncorhynchus tshawytscha (Chinook salmon): 112258872
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Entry
112258872 CDS
T05605
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112258872 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112258872 (ddx5)
03009 Ribosome biogenesis [BR:
otw03009
]
112258872 (ddx5)
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112258872 (ddx5)
Spliceosome [BR:
otw03041
]
Complex A
U1 snRNP components
U1 related factors
112258872 (ddx5)
Complex B
112258872 (ddx5)
Ribosome biogenesis [BR:
otw03009
]
Eukaryotic type
Pre-60S particles
Helicases
112258872 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
112258872
NCBI-ProteinID:
XP_024289276
LinkDB
All DBs
Position
LG09:81818274..81823720
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AA seq
615 aa
AA seq
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MPGFSDRDRGRDRGYGSGPPRFGGGGRGGGGGKFGNPGDRLRKKHWNLDELSKFEKNFYQ
EHPDVTRRSPQEVAQYRSTKAVTVKGRDCPNPIMKFHEASFPTYVMDVINKAGWSEPTPI
QAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELA
QQVQQVAAEYGRASRLKSVCVYGGAPKGPQLRDLDRGVEICIATPGRLIDFLEAGKTNMR
RCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYVQI
NVGALQLSANHNILQIVDVCNDGEKEDKLLRLLEEIMSEKENKTIIFTETKRRCDEITRR
MRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINFDYPN
NSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLVAVLREANQAINPKLLQMADRGGH
SRGGRGGSGFRDDRRDRYSSGGRRDFSSFRDRENDRGFDSGPKKVFGTNSQSGGYGASGF
DKSGNGFGGGYGTNGQSNYGASQAGVFPTQNFQAPQFSANQGGAQSGMSHQQFPFTQQQA
PQPMVPYPMPPQFPQ
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttctgacagagatcgtggtagagatagaggatatggcagtggaccacct
cgttttggaggcggtggaagaggtggtggtggggggaagtttggtaatcccggtgatcga
ctgcgcaagaagcactggaaccttgacgaactctctaaatttgaaaagaacttttaccaa
gagcacccagatgttactcggagatctccgcaagaggttgcacagtacagaagtactaaa
gcggttactgtgaagggaagggactgccctaatccaattatgaagttccatgaagccagt
tttccaacctacgtgatggatgtcattaacaaagcaggctggtcagaaccaacaccgatc
caagcacagggttggccactggctttgagtggcaaggacatggttggtattgcacagacg
ggctctgggaaaactctctcgtacttgttgccagcaatcgtgcacattaatcaccagcct
ttcctggaacgtggagatggccctatttgcttagtgcttgccccgacccgtgagctggct
cagcaggtccagcaggtggcagcagagtatggcagagcttctcgcctgaagtctgtctgt
gtttatgggggtgcgcccaaagggccacagctccgtgacctggatagaggtgtggagatt
tgcattgccacacctggcaggcttattgacttcctggaggcaggaaagaccaacatgcgc
agatgcacttacctggtactggatgaggctgaccgaatgctcgacatgggtttcgaacca
caaatccgaaaaattgtggaccaaatcagacctgaccgacagacactgatgtggagtgcc
acttggcccaaagaggtgcgccagctggcagaggacttcctgaaggactacgtccagatc
aatgtgggagctctgcagctgagtgccaaccacaacatcttgcagatcgtggatgtttgc
aatgatggcgagaaagaagacaaactcctccgccttctagaggagatcatgagtgagaag
gagaacaaaaccataatctttacagagaccaagaggagatgtgacgagatcactaggagg
atgaggcgggatggttggccagcaatgggcatccatggagacaagagccagcaggagagg
gactgggtgctcaatgagttcaagtttggaaaggcgccaattctcattgccacagacgtc
gcctccaggggtctagatgttgaagatgtgaaatttgtcatcaactttgactaccccaac
aactctgaggactatatccaccgcattggcagaactgcccggagccaaaagactggcaca
gcctacaccttcttcacccccaacaacatgaggcaggccagtgacctcgttgctgtgctc
cgtgaggccaaccaggccatcaaccctaaactcctccagatggcggacagaggaggtcat
tcaaggggaggcagaggtggtagtggatttagggatgaccgccgggacaggtactcctcc
gggggcaggcgtgacttcagtagctttagggacagggaaaacgatagaggttttgacagt
ggaccaaagaaagtctttggcacaaattcacagagtggaggttatggggcaagtggcttt
gacaaaagcggcaatggttttggcggcggctacggcaccaacggccagtcaaactatggt
gccagccaggccggggtgttcccaacgcagaacttccaggccccacagtttagtgccaac
caaggcggtgcacagagtggcatgagccatcaacagttccccttcacacagcagcaagca
ccacagcccatggtgccttacccaatgccccctcaattcccacagtaa
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