Oncorhynchus tshawytscha (Chinook salmon): 112258962
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Entry
112258962 CDS
T05605
Name
(RefSeq) DDB1- and CUL4-associated factor 7
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
112258962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112258962
03036 Chromosome and associated proteins [BR:
otw03036
]
112258962
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
112258962
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
112258962
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_EIPR1
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_RIG_2nd
WD40
Beta-prop_Aladin
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_RFWD3
Beta-prop_WDR3_2nd
MIOS_WD40
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WD40_Gbeta
EIF3I
WDR55
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR41
WD_LRWD1
WD40_MABP1-WDR62_2nd
Motif
Other DBs
NCBI-GeneID:
112258962
NCBI-ProteinID:
XP_024289409
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All DBs
Position
LG27:18866524..18873448
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AA seq
342 aa
AA seq
DB search
MSLHGKRKEIYKYEAPWTVYAMNWSVRPDKRFRLALGSFVEEYNNKVQIVGLEEESSEFI
CRNTFDHPYPTTKIMWIPDSKGVYPDLLATSGDYLRIWRVSETETRLECLLNNNKNSDFC
APLTSFDWNEVDPNLLGTSSIDTTCTIWGLETGQVLGRVNLVSGHVKTQLIAHDKEVYDI
AFSRAGGGRDMFASVGADGSVRMFDLRHLEHSTIIYEDPQHHPLLRLCWNKQDPNYLATM
AMDGMEVVILDVRVPCTPVARLNNHRACVNGIAWAPHSSCHICTAADDHQALIWDIQQMP
RAIEDPILAYTAEGEINNVQWASTQPDWIAIGYNNCLEILRV
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctccacggtaagcgaaaagagatctacaaatacgaagcgccatggacggtgtat
gcaatgaactggagcgttcgtcccgacaaacgctttcgcctggcccttggaagtttcgtt
gaagaatataacaataaggtgcagattgtgggtctggaggaggagagttcagagttcatc
tgcaggaacacctttgaccacccctaccccaccaccaagatcatgtggatcccggacagc
aagggtgtttacccagacctgcttgccactagcggggactacctgcgcatctggagggtc
agtgaaacagagacgcgtttggaatgcttactgaataacaacaagaactctgacttctgt
gccccactcacctcgtttgactggaatgaagtggatcctaatctactgggcacctccagc
attgacaccacctgtactatctgggggttggagactggccaagtgctgggcagagtcaac
ctcgtatccggccacgtcaagacccagctcattgctcatgacaaagaggtgtatgacatc
gcgttcagccgtgcaggcggtggtcgggacatgtttgcgtcggtcggagcggacggctca
gtacgcatgtttgacctgcggcacctagaacacagcaccatcatctatgaagatccccag
caccaccccctactgcgcctctgctggaacaaacaggaccctaactacctggccaccatg
gctatggacggcatggaggttgtgattctggacgtgcgtgttccctgcacgccggtggcc
cgcctcaacaaccaccgggcctgtgtcaacggcatcgcctgggctccccactcctcctgt
cacatctgcactgcagccgacgaccaccaggcgctgatatgggacatccagcagatgccc
agggccatcgaggaccctattctggcctacacagccgagggggagatcaacaacgtccag
tgggcctccacccagcctgactggatcgccatcggctacaacaactgcctagagatcctg
cgggtctaa
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integrated database retrieval system
