Oncorhynchus tshawytscha (Chinook salmon): 112259003
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Entry
112259003 CDS
T05605
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112259003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112259003
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112259003
Spliceosome [BR:
otw03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
112259003
Complex B
112259003
Complex C
U2 SnRNP specific factors
112259003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
112259003
NCBI-ProteinID:
XP_024289468
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All DBs
Position
LG27:complement(18994046..19001468)
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AA seq
929 aa
AA seq
DB search
MNWSKGGPSGKRGFGFGGFSLGGGGGGGGKKEELHVPQKSHTSFGGTGTAGGYGKNQQLP
AFYKIGTKRANFDEENAYFEDDEEESSSTDLPYIPAENSPTRQQFRSGGGSDSEDDPLDA
FMAQVEDQAAKDMKKLEEKEKEKKVEKGIRDDIEEEDEQEAYFRYMAENPTAGLTAEDED
ENIDYDSDGNPIAPTTKKIIMPLPPMDHSEIVYPPFERNFYNEHEELLSLTGTEVFELRH
KLNLRVSGAAPPKLSTSFAHFGFDEQLMHIIRKSEYTQPTPIQCQGVPIALSGRDMIGIA
KTGSGKTAAFIWPMLVHIMDQKELETGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLRS
VAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGF
EYQVRSIASHVRPDRQTLLFSATFRKKIERLARDILVDPIRVVQGDIGEANEDVTQVVEI
MPSGVEKWGWLTRRLVEFTSSGSVLIFVTKKANCEELATNLTQEGHSLGLLHGDMDQSER
NKVIADFKKKSLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGV
AYTLLTSKDTSFAGDLVRNLEGANQSVSKELMDLAMQNPWFRKSRFKGGKGKKLNIGGGG
LGYRERPGLGAGSSERSGGAAMGNYEGYSKPTGAMGDRMSAMKSAFQSQYKNHFVAASGM
VPKLTTKSSSSSGWTSAGSLSSVPTGAPEGPDRPRGPPSLAMAPPAALGMGTKMAGFTSA
GSLSSVSDSQATAPQGNAAPPSPREGPRDRHGDDRSRHGDGHYRDRRDRGERHSGVGERD
RYGERDRHADRDRYGDKDRHGSSGRHGDSRNGDGSRRDRERDDCRGDRESGDRAGSEGRG
DRAEGKGDREEDSFAVPDPPKRKKSRWDN
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgaactggagcaagggtggcccaagtggtaagcgagggttcggttttggaggattttcc
cttggtggtggtggtggtggaggaggaaagaaagaagaacttcacgtgcctcagaaatcc
cacacgtccttcggaggcacagggacagctggaggttatggcaagaaccagcaactccct
gccttctacaagataggaacaaaaagagcaaattttgatgaagagaatgcatattttgaa
gatgatgaagaggagtcaagcagcacagatttgccatatatcccagctgagaactccccc
acacggcaacaattccggtctggagggggctcagacagtgaggatgatcctctggatgcc
ttcatggcccaagtggaggaccaagcagctaaagacatgaagaaactggaggaaaaagag
aaggaaaagaaggttgaaaagggtatacgtgatgacattgaagaggaagatgaacaagaa
gcctacttccgctacatggcagagaatcccacagctgggctgaccgcagaggacgaggat
gagaacatagactacgacagtgatgggaatcccattgcccccaccactaagaagatcatc
atgcccctgcccccgatggaccactctgagattgtctacccaccttttgagaggaacttc
tacaacgagcatgaggagcttctcagcctgacaggcaccgaggtgtttgagctgagacac
aaactcaacctgcgggtgtctggtgccgcccctcctaaactctccaccagcttcgcccac
tttgggtttgacgagcagctgatgcacataatccgcaagtcggagtacactcagccaaca
cctattcagtgccagggagttcccattgccctgagtgggcgtgacatgattggcattgca
aaaactggtagtggcaagactgcagccttcatctggcccatgctagttcacatcatggac
cagaaggaactggagactggagaggggcccatcgcagtcatcgtgtgccccaccagggag
ctctgtcagcagatccacgcggagtgtaagcgttttgggaaagcctactccctgcgctcg
gtggcggtgtatggaggaggcagcatgtgggagcaggccaaggctcttcaggagggggca
gagatagttgtgtgcaccccgggtcgtctgattgaccatgtgaaaaagaaggccacctct
ctgcagagagtgacatacctggtgtttgatgaggcagatagaatgtttgatatgggcttt
gagtatcaagtgagatccattgccagccatgtccgacctgatcgacagactcttctgttc
agcgccaccttccgtaagaagattgagaggctggctagagatatcctggtggaccccatc
cgcgtggtgcagggagacatcggggaggccaatgaggatgtgacccaggtagtggagatc
atgcccagtggggtggagaagtggggctggctgacccgccgcctggtggagtttacctcc
tctggctctgtacttatcttcgtcaccaagaaggccaactgtgaagagctggccaccaac
ctgacccaggagggtcacagcctgggcctgctgcacggagacatggaccagagtgagagg
aacaaggtcatcgctgacttcaagaagaagagtttgcccgtgctggtggccaccgacgtg
gcagcccgtggtctggatatcccttcaatacgcacagtagtgaactatgacgtggctcgg
gacatcgacacacacacacaccgaattggccgaacaggtcgtgctggagaaaagggtgtt
gcctacacccttctcaccagtaaagacacatcatttgcaggagaccttgtgcgtaacctg
gagggagccaatcaaagcgtctctaaggagctgatggacttggcaatgcagaatccctgg
ttcaggaaatcacgcttcaagggcggcaaagggaagaagctaaacattggaggaggtggt
ctgggctacagagagaggccaggattgggagctggaagttctgagcgtagtggtggtgct
gccatgggtaactatgagggctacagcaagcctaccggagccatgggagaccgcatgtca
gcaatgaagtcagccttccagtctcagtataagaaccactttgtggcggcgtccggcatg
gttcctaaactcaccactaagtccagtagctcttcaggctggaccagcgctggaagtctg
agctccgtccccaccggggcccctgagggcccagaccggccacgtgggcccccctcctta
gccatggcccccccagcagccctcggcatgggcaccaagatggcaggcttcaccagcgct
ggctccctgagctctgtgtcagacagccaggccactgctcctcaggggaatgccgcccca
ccctcacccagggaagggccccgtgacagacatggtgatgacaggagtcgccatggagat
ggccactaccgtgacaggagagaccggggtgagcggcacagtggcgtgggagagcgggac
cgctatggggagcgggaccgccacgcagaccgcgacaggtacggggacaaggatcgccat
ggcagcagcgggcgccatggcgatagtcgtaatggagacggaagtagaagggacagagag
cgagacgattgtagaggtgacagggagagtggagacagggcagggagtgaaggaaggggg
gacagagctgaggggaaaggagaccgagaggaagacagctttgcagtcccagatccacca
aaacgcaagaagagtaggtgggacaactaa
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