Oncorhynchus tshawytscha (Chinook salmon): 112259091
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Entry
112259091 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: transcriptional regulator ATRX-like
KO
K10779
transcriptional regulator ATRX
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
112259091
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112259091
03036 Chromosome and associated proteins [BR:
otw03036
]
112259091
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
112259091
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
112259091
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
ATRX_C
Helicase_C
C5HCH
Vps8_C_schizo
Motif
Other DBs
NCBI-GeneID:
112259091
NCBI-ProteinID:
XP_042183778
LinkDB
All DBs
Position
LG09:28133972..28174113
Genome browser
AA seq
1829 aa
AA seq
DB search
MSSEMLSVPPGTSKLDVLVTKLHEFLAHAPEDDEDRLVTESPDGMTNKDCVEPHSTDRTP
LETSTDTLKQSGCGSRRKPSVVIKHSGLDESGASNESDDDDDDGLIINSNGYPDVTRLPK
GTVLVRPEPVENVRDDFRGPEFRCGKSGNLKRAFSRRRGGGEHLEIVSCTACGQQVNHFQ
RDSFYQHPVLKVLICKSCFKYYSSDDISKDCDGMDEQCRWCAEGGNLICCDFCPNAFCKK
CILRNLGRKELSGILDEESKWYCYVCSPEPLLDLVVACDNVLDNLGHLWPDHRKRGRGEG
KSGHYDSHPRHSQNIPVGHWNHSGMDGHVVFNYNTLQIPEEMAKKAKNLVDSTNTVNTTF
VKFIQGGMQQKQTTELKLQYLKTFQSVLKGLKKSQTALEEALLEEFREMGLPNGGENPTF
DDTDVPQQEQEGCVEIDISDKNGLHYLKKIAAEHLEENDSDSNGFMDDGRPSSSIEMKGV
LGTEIIPRRGRGRPRKNSKPGEDACNVTKQLVVQISPAPVEQEPLSGPPELEVEVELEAE
EEEEERKEKVEEREGDCESIELVTEGEYESAEGSESLELEEEPDNRRSPRVKTTPLRRPG
EGKTQPTPSGADSESDSDPDTSPNAEVPQGADEEGLGRGTDDSDSDEVPAVLQRAAMTRS
SDEAESDDGDHLSVTKKCLFGLKKNTPLSPERVVRKRKVPDRSSDSDSSSDDPDLQKEIK
TMTRPRGRPRKVKREDEPTPSKDSPQHRPRGRPRKVKKEDESTSSKEGNTQAAKPQSTPQ
SEHRMKQTPSSSSQEEGDLDSESSDVSGDQKIKPITEEVALLGVAAFHQSSGDEEQPQSG
PSWAAEDDDDPENRIAKKMLLAQIKANYSSGEDFSSNVESSHDDESDREEKEQEDGKDES
SDENANRRTRAMNRCSKALHHLPLESRGNQSVVIYRRSSNPHIIVLSDSSVDKSDDEEKD
GEEGNNKGTPKGRKKIRRIIVDEHLRSETQRALKEEEERRRRLAEREQREDFREVIAFED
EASHVACPITTKLVLDQDEGTKEPLIQVHRNLVTRLKPHQVDGLQFIWDCCCESVKKANS
TGSGCLLAHCMGLGKTLQIKGSEHAAVKVMNFRTALVVCPLNIILNLVNEFEKWQVDMGA
DKVKVTELATLKRAQECYIALQRWQMDGGVMIMGYEMYRNLTLGLKVIHGKFKKTFDSTL
VDPGPDFVIWDEGHILKNEASNISKAMSAIKTKRRVVLTGTPLQNNLNEYHCMVNFIKEN
LLGSIKEFRNRFINPIENGQCADSTPRDVRFMKNRAHVLHAMLTGCVQRRDYSALTKFLP
PKHEYVIAVRVTPLQYRLYCYYLDNFTGARSVVEGARGKAGTSLFKDFQILSRIWNHPWC
LQLNYISKENKAILMGSTRGKLTEKENKGKVVNADEDSKDVEVILVWNSTSKGVNVEGDQ
RAGPLVSVVKALRSSTSFRPDSPAADWYKSMLSDSDATILGHSGKMVLLFEILQMAEELE
DKMLVFSQCLITLDMFEDFLDLTKNKAKNNRQSSLYKGNGSWIRNTDYYRIDGSTSATSR
MKWVQDFNDATNERGRLFLISTRAGSLGINLVAANRVVVFDASWNPSYDIQSIFRVYRFG
QLKAVFVYRFLAQGTMEEKIYDRQVPITITGQSLSFRVVDQQQIQRHFTLFELTELYMFE
PDLLDDPNSEKKSKRTTPLVPKDMVLAELLQSCKGQIVXLHESLLDHKEEEELSEADRKT
AWAEYEAEWQDNPSLDEKQVRALAQTWKTSNDKERERRQALHHNLLTKQQSLTMCIQTIL
ASRKNEITHTATVTNHTPALTDSANKPTQ
NT seq
5490 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcagagatgctcagcgttcctcctggcacgagcaagctcgatgtgttggtgacc
aaactgcatgaattcttggctcatgctccagaggatgatgaggacagactggtgacagaa
agtcctgatggtatgacaaacaaggactgtgtggagccacactcaacagaccgaacccct
cttgagacctcaacagacaccttgaagcagtctggatgtggttccaggagaaaaccttca
gttgtgattaaacacagtggactggatgaatctggtgcttcaaatgaaagtgatgatgat
gatgatgacggcttgatcatcaattcaaacggttatcctgatgtaacaagattacctaaa
ggcactgtgctggtgaggcctgagccagtggaaaatgtcagagatgacttcagaggtccc
gaattccgttgtggaaaatctggcaatctgaagagagctttttctaggagacgtggaggt
ggtgaacacttggagattgttagctgtacagcctgtggccagcaagttaaccacttccag
agggactccttctatcagcatccagtactcaaagtacttatttgcaagtcttgtttcaag
tattactcaagtgatgacatcagcaaggattgtgatggcatggatgaacagtgcagatgg
tgtgcagaggggggaaacctgatatgctgcgacttttgccccaatgccttctgtaagaaa
tgcattttgcggaacctggggcgaaaagagttgtctggcatcctggatgaggagagtaag
tggtactgctacgtatgtagcccagagcctcttctggacctggttgtcgcttgtgacaac
gtccttgacaacttggggcatttgtggccagaccaccgcaagaggggcaggggcgaggga
aaatctggacattatgactcccatccaaggcattctcaaaacattcccgtgggtcattgg
aaccatagtggcatggatggtcacgttgtgttcaactacaacacccttcaaattccagag
gagatggccaaaaaggctaaaaacctggtggactctacaaacactgtaaacacaactttt
gtgaagttcattcaaggtggcatgcagcagaaacagacaaccgagttaaagctacaatac
ctgaagactttccagtcagtactgaagggtctgaagaagtctcagacggctctggaggaa
gcccttttggaggagttcagagagatgggtttgccaaatggtggcgaaaaccccacgttt
gatgatactgatgtacctcaacaagaacaagagggttgtgtggaaattgacatttctgat
aagaatggccttcattacttaaagaaaattgcagctgaacatttggaagagaatgattca
gactcaaatggctttatggatgatggaaggccttcgtcctcaattgaaatgaaaggtgtc
cttggcacagagataattcccagacgaggtagaggcaggccgcggaaaaactcaaagcct
ggagaagatgcttgcaacgtgacaaaacaactggtggtgcaaatttcacctgcccctgtt
gaacaagagccactctctggccccccagagttggaggtggaagtggagttggaggcagag
gaggaagaggaagagagaaaagaaaaagtggaggaacgggagggagactgtgaatctatt
gaacttgtaacagagggggagtatgaatctgctgagggaagcgaatctctggaactggaa
gaggaaccagataacagacgctcacctcgggtaaagaccacacccttgcgcaggccaggt
gagggcaagacccagccgaccccctcgggtgcagacagtgagagtgactcggacccagac
accagccccaatgctgaagtgcctcaaggagctgatgaggaagggcttgggagaggaact
gatgactctgactccgatgaggtcccagctgtcctccagcgggctgccatgacgcgtagt
tcagacgaagccgagagtgacgatggagaccatctgagtgtgaccaagaaatgcctcttc
ggcctgaagaagaacacgcccctctctccagaaagagttgtccgcaaacgcaaggtgcca
gaccgctcctctgactctgattcctccagtgacgatccggacctgcagaaggagatcaag
actatgaccaggcccagggggaggcctcggaaggttaagagagaggatgaacctaccccc
agcaaggatagtcctcaacataggcccaggggcagacctcggaaggtcaagaaagaggat
gaatctacatccagcaaggagggtaatacccaggcagccaagcctcaaagcacacctcaa
tccgagcatagaatgaagcagacgccatcctcttccagtcaagaagagggggacctggac
tctgagtctagcgatgtcagtggtgaccagaagatcaagcctatcactgaggaggtggcc
ttactgggggtagcagctttccaccagtcgtccggcgatgaagagcagccccagtctggg
ccttcttgggcagcagaagatgatgacgatccagaaaatagaatcgctaagaaaatgctc
ttggcccaaatcaaagccaactactcatcgggggaggatttctcttcaaacgtggagtca
tcacatgatgatgagtctgacagggaagagaaggagcaagaagatgggaaagatgaaagc
tccgatgagaatgccaatcggagaacgagggcaatgaacagatgctcaaaagctctacat
catctacctctagagtcgagagggaatcagtccgtagttatctacagaagaagcagcaac
cctcatataattgtgctgtctgactccagtgtcgataagagtgacgatgaagagaaggac
ggtgaggaagggaacaacaaaggtacacctaagggccgcaagaagatccgcaggatcatc
gtagacgagcacctccgatcggagacccagagagccctgaaagaggaggaggagagacgc
agacgcctggcagaaagagagcagagggaggacttcagagaggtgattgcttttgaggat
gaggcttctcatgtggcctgtcccatcaccactaagctggtcctggatcaggatgagggg
acaaaggagccactcatccaggtgcacaggaacctggtgaccaggctcaagcctcaccag
gtggatggtttgcagtttatctgggactgttgttgtgagtctgtgaagaaggccaattca
actggatcaggctgcttactggcccactgcatgggcctaggaaagacactgcagataaaa
ggaagcgaacatgctgcagtcaaagtcatgaacttcaggactgccctggtggtgtgtcca
ctcaacatcatcctcaacttggtcaacgagtttgagaagtggcaagttgacatgggagct
gacaaagtcaaggtgacagaattggccacactgaagcgagcacaggagtgttatattgcc
ctgcagagatggcagatggatggtggtgttatgatcatgggctatgagatgtaccgtaac
ctcacactaggcctcaaagtcatccacggaaagttcaaaaagacctttgacagtactctg
gtcgatccaggtccagactttgtgatctgggacgagggtcacatcctgaagaacgaggca
tccaacatctctaaagctatgagtgccattaagaccaaaaggagggtggtgctgacaggc
acaccactgcagaacaacctcaatgagtaccactgcatggtcaacttcatcaaggaaaac
cttctgggctcaatcaaggagttccggaaccgctttatcaaccccattgaaaacggccag
tgtgcagactccacccccagagacgtccgcttcatgaagaatcgcgcccatgtccttcat
gcaatgttgacaggatgtgtacagagaagagactactcagccttgaccaagttcctgccc
cctaaacatgaatatgttatagcggtgagggtgacccctctccagtacagactgtattgc
tactacctggacaacttcactggagctaggtctgtggttgagggagccaggggcaaagcc
ggaactagccttttcaaggacttccagatactcagccgaatctggaaccatccttggtgt
ctgcagctcaactatatcagcaaagaaaataaggccattttgatgggaagcaccagggga
aaactgacagagaaggagaataaggggaaagtggtgaatgctgatgaagacagcaaggat
gtggaggtgatcctggtgtggaacagcacatcaaagggcgtcaatgtggaaggagaccag
cgagcaggtccactggtttcagttgtaaaagcgttgagatcgtccaccagtttcaggcct
gacagtccggctgcagactggtacaagtcaatgctgagtgactctgacgccaccatcctg
ggacactcagggaagatggtgctgctgtttgaaattctccaaatggcagaggaactggaa
gacaaaatgttggtgttcagtcaatgcttgatcacattagacatgtttgaagatttcttg
gacctcaccaaaaacaaagccaaaaacaacaggcaatcatccctctacaaaggtaatggc
agctggatcagaaacactgactattaccgtattgacgggtccaccagtgccacatccagg
atgaaatgggtgcaagatttcaatgatgccaccaacgagcggggtcgtctgtttctcatc
tcgacaagagctgggtcccttgggatcaacctggtagcagctaacagggtcgtagttttt
gatgcttcgtggaatccctcctatgacatccagagcatcttcagggtgtaccgttttggc
cagctgaaggctgtgtttgtctaccgcttcttggctcagggcactatggaggagaagatc
tacgaccggcaggtgccaatcacaatcactggccaatcactgtcgttccgggtggtggac
cagcagcagatacagagacacttcacactgtttgaactgacggagctctacatgtttgag
ccagacctgctggatgaccccaactctgagaagaagagcaagaggaccacacccctggtg
cccaaggacatggtgctggcagagctgctgcagagctgtaaagggcagattgtcntgcta
cacgagtccctgctggaccacaaagaggaggaggagctcagtgaggctgaccgcaaaact
gcctgggctgagtacgaggcagagtggcaagataacccaagtctagatgagaagcaggtg
agagccctggcccagacctggaaaaccagcaatgacaaggagcgggagcgacgacaggcc
ttacatcacaacctcctcacaaaacaacaatcacttacaatgtgcatccagaccattttg
gccagtagaaaaaacgaaattacccatactgccacggtcaccaatcacacaccagctcta
acagattccgccaataaacctacacagtga
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integrated database retrieval system
