Oncorhynchus tshawytscha (Chinook salmon): 112259094
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Entry
112259094 CDS
T05605
Name
(RefSeq) nectin-3-like protein
KO
K06592
poliovirus receptor-related protein 3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04514
Cell adhesion molecules
otw04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
112259094
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
112259094
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112259094
04090 CD molecules [BR:
otw04090
]
112259094
Cell adhesion molecules [BR:
otw04515
]
Immunoglobulin superfamily
Nectin family
112259094
CD molecules [BR:
otw04090
]
Proteins
112259094
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
V-set
Ig_3
ig
C2-set_2
I-set
Ig_2
Keratin_assoc
TM_ErbB1
Porin_3
Motif
Other DBs
NCBI-GeneID:
112259094
NCBI-ProteinID:
XP_024289625
LinkDB
All DBs
Position
LG09:complement(28371227..28424764)
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AA seq
557 aa
AA seq
DB search
SGVVWWKIASHLTVSLESGVGGSQVLVPQKVSAVLGKNVTLGCSVEVEANLSFTQSSWER
RLPTGSVTVAVYNPVFGISIPPDYVRRLSFRSPSSHDATIVLEDVSFTDIGVYTCKVATF
PLGNTQASTTVSVLVEPKVYVSAGSVALIDEGNETVVATCIAERALPPAEVSWETDLFGH
SEVTMQDEANGTTSTQVHYLWQPTRHVQGQALTCVVRHPALHTDFRIPYQLNVEYAPDIV
VVGYDGDWHVGRESVLLTCKAKANPPAHHFRWIRLDGDMPEGVEIVNSTLLFLRPLQRND
SGVYRCEVANAINLRSRDLRIRIQDPPTTSMPSTTPAPVLTGSASSSTSVGDKQRVLFTS
PTLAALPPANQLGTIVGGAVGGALFLLLLLVLGGVCYLRQRQTFRGDYYTKQYLGPSDMQ
KAPPQHELHPSKPANNVFVDKDREEWGDRERNHERDRERLHLHPTSTTIMNSHNHREPER
QSNGRTRATRNGEHHDHDHLRSYPSPHQSSHARYTAPPHPLSNGSPYLSDDCYDSGAEGD
YVSHMDGSVISRREWYV
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
tctggggtggtgtggtggaagattgcctctcatttgactgtatcgctggaatcaggtgtg
gggggcagtcaggtgttggtgccccagaaggtgagtgctgtattggggaagaatgtgacg
ttgggctgtagtgtggaggtggaggccaacctgagttttacccagagttcctgggagcgc
cggctgcccacaggctcagtgacggtggcggtgtacaaccctgtgttcggtatctccatc
cccccggactacgttcgccgcctgtccttccgctcaccctcctcccatgacgccaccatc
gtactggaggacgtgagcttcacagacattggagtgtacacctgcaaggtggccaccttc
cccctgggcaacacacaggcctccaccactgtcagcgtacttgtggagcccaaggtgtat
gtgtcggctggctcggtggctctgatcgatgagggcaatgagacggtggtggctacctgc
atcgctgagcgggccctcccccctgccgaagtctcctgggagacggacctgtttggccat
tcagaggtgacgatgcaggacgaggccaacggcaccaccagcacccaagtgcactacctg
tggcagccgacccgccacgtccagggtcaagccctcacctgtgtggtgcgccatcctgcc
ctgcacacggactttaggatcccctaccagctcaatgtggagtatgccccagacattgtg
gtggtaggttatgatggtgactggcacgtgggccgcgagagcgtcctgctgacctgcaaa
gccaaggcaaacccaccagcccaccacttcagatggatcagactggacggggacatgcca
gagggggtggagatagtgaacagcacattgctgtttctgaggcccctccaaaggaatgac
tctggagtctacaggtgtgaggttgccaatgccatcaacctacgcagcagggacctgcgg
atacgcatacaagatcctcccaccacctccatgccctccaccacccctgcgcctgtccta
actggctctgcctcctcctccacctctgtgggagacaagcaacgggtcctcttcacctcc
cccaccctggcagccctgccccctgccaaccaactgggcaccatcgtgggcggagctgtg
ggcggagccttgttcctcctgctgctgctagtgctgggcggggtctgttacctccgacaa
cgacagaccttccgtggggactactacaccaagcagtacctagggccttcagacatgcag
aaggctcctccacagcacgagctccacccctccaagcctgccaataacgtttttgtagac
aaggaccgcgaggagtggggcgaccgcgaacgcaaccacgagcgggaccgcgagcgcctc
cacctgcatccaacatcaacaaccatcatgaacagccacaaccacagagagccagagcgc
cagtccaatggccgcacgagggcgacgagaaatggagaacaccatgaccacgaccacctg
cgtagctaccccagcccccaccagagtagccatgccagatacactgccccaccacacccg
ctgagcaacggttccccctacttgtcggatgactgctatgacagtggggccgagggggac
tatgtctctcatatggacggctccgtgatctcacgcagggagtggtacgtctga
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