Oncorhynchus tshawytscha (Chinook salmon): 112259099
Help
Entry
112259099 CDS
T05605
Name
(RefSeq) Down syndrome cell adhesion molecule-like protein 1 homolog isoform X1
KO
K06768
Down syndrome cell adhesion molecule-like protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112259099
Cell adhesion molecules [BR:
otw04515
]
Immunoglobulin superfamily
DSCAM family
112259099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
fn3
Ig_2
ig
Ig_DSCAM-DSCAML_C
V-set
C2-set_2
Pur_ac_phosph_N
Ig_5
Ig_6
Sp38
DUF6034
ChitinaseA_N
DUF1461
Motif
Other DBs
NCBI-GeneID:
112259099
NCBI-ProteinID:
XP_042182674
LinkDB
All DBs
Position
LG09:28843091..28940697
Genome browser
AA seq
2060 aa
AA seq
DB search
MWLVTLLLLYSLREVHSEDVGSTRLYFVNASLQRLTYSSSVGVSLPCPAGGTPTAILRWY
LATGDDIYDVPHIRHVHANGTLQLYPFSPSAFNSYIHDNDYFCTAENQAGKIRSPNIRVK
AVFREPYTVRVADQRSMRGNVAVFKCLIPTAVQEYVSVVSWERDTVSIVPGNRFFLTSFG
ALYISDVQKEDALSTYRCITKHKYSGETRQSNGARLSVMDPTESSPSILDSFQAGEVPAG
QSVELPCMAAGYPSPTVRWLKDGRPLPSDARWTRRLTGLTISDLRQEDSGSYACEVTNSF
GSKEVSGALYVIDPLRVTLSPKSLKTGISSTLFFTCAVEGSPEYTVAWYRNTEPIVPDQH
ISIQGSHNDTLQITAAQKSHSGAYQCFASRKGHTAQDFSIILLEDGTPRIVSSFSERVVA
PGEPFSLMCASKGAPPPSITWTLDDEPVVRDSAYKTSQYTLSDGLTVSHVNVSSPAIRDG
GVYRCAARNSAGSAEYQARINVRGSPRIREMRDITAVAGRNTFITCRVIGYPYYSIKWFK
DGMLLPDNHRQVVYENGTLRLSDVQKGMDEGTYLCSVLIQPQTSIDQTVHVTVKVPPLIQ
PFDIPSTSVGKLMYIACVVSSGDMPIRITWHKDGQLIVPGSASGVGIETKEFMSSLQISK
VTLKHNGNYTCIASNAAATVSWERQLVVTVPPRFVVQPNNQDGIYGKAGVLNCSVEGYPP
PKVMWKHAKGIGNPQQYHPVPLTGRIQIMFNGSLLIRHVLEDDRGYYLCQASNGVGSDIS
KSMVLTVKIPAMITSHPNTTMAIKGQMKELNCTARGEQPIIIRWERGDTVIDAERNPRYS
ITINKKGDEVISTLKLKPAERGDSVFFSCHAINSYGEGRGLIQLTVQEPPDPPELEVREV
KDRSMNLRWIQRFDGNSIITSYDIEYKNKSDTWDHKYTTRNISPTNNQANIVELHPACVY
SIRMYSFNKIGRSQPSKELTISTEEAQPDGPPMEVILQPMTSQSIRVTWRAPRKELQNGL
IRGYQIGYRENGPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSS
TEINATTLEDVPSQPPQNVRAISVTSDEAVITWAEPPRLTLHGVLKGYRVVFWSLFPDGG
GCCGGQAQGPMQKWGEMQNITTTREQVELRGLEKFTNYSVQVLAYTQAGDGVRSNVLYIQ
TREDLPGPPAGIKAVPSSPNSVVVSWLPPLKPNGVIRKYTIYCSSPGSGQPAPSEYEANP
EMLFYRITHLTRGKQYLIWASAVTTAGRGNISEKVTVEPAGKAPAKILSFGGTVTTPWVK
EVRLPCSSVGEPTPTIKWTKDSEDSTIPVTVDGQRQILSNGTLVLRSVKAEDSGYYTCTA
TNTLGFDTIIVNLLVQVPPDQPRLTVSTTSTSSITLAWIPGDNGGSSIRGFVLQYSVDNT
EEWRDVFISSSERSFRLDNLRCGTWYKVKLAAKNSVGSGRISEIIEAKTHGREPVFNKEQ
PLLTHINSTHAGLNLQGWTSGGCPITALLLDFRPKGTWAWQSLKANATAQLFLSELREAT
WYELKMKACNSAGCGNQSSQFATTDYDGSTIPPISSAHEDRDDVKKLFSIGSPVILVTLG
VALLFIIRKKRKEKRLKRLRDAKSLAEMLISSKNNRSMDTPVKGPPQGPRLHIDIPRVQL
LIEDKEGIKQIGEDKAVAPVTDTEFSQSVNPQSFCTGVSLHHPALIQNTGPLIDMSDIRP
GTNPVSRKCVKSAHSSRNRYSSQWTLSRPGQSQSTASARTLTSDWRTMGSHGITATESDS
YSASLSQDTDKGRNSMVSTESASSTYEELARAYEHAKLEEHLQHAKFTITECFISDSSSD
QMTTGTNDPADSMTSLSTPSETGLCRFTASPPKPQDYDRGRPTNVAVPIPHRANKSEFCN
LPLYMKTDPFFRKQAELHDPCPAVPPREASIRSLAQRAYHTQGRHMTLDPSKQQALTLGH
SGLGSLGVSSGTATLPQRTLTMPCSNPAATASTSSTSSNPTGSSTKMGGSRDSLLENSSS
ALGRLQKQGVGAYSKSYTLV
NT seq
6183 nt
NT seq
+upstream
nt +downstream
nt
atgtggcttgtaactttactcctgctgtactctctccgggaagtacacagtgaggatgtg
ggctctaccaggctgtactttgtgaacgcatccctccagaggctgacctactccagctcg
gtgggggtgtctctgccctgcccggcgggcggcacccccaccgccatcctgcgctggtac
ctggccaccggcgatgacatctacgacgtgccccacatccgccacgtccatgccaacggc
accctccaactctaccccttctcaccctccgccttcaactcctacatccacgacaacgac
tacttctgcaccgcagaaaaccaggctggcaagatccgaagccccaatatcagagtcaaa
gctgtgttcagggagccgtatacggtgcgtgttgcagaccaacgctccatgcggggcaac
gtggccgtgttcaagtgcctcattcccaccgccgtgcaggagtacgtcagcgtggtgtcc
tgggagagagacactgtctccatcgtcccaggtaacaggttcttcctgacgtcctttggt
gctctgtacatctcagatgtccagaaggaggatgccctctccacctaccgctgcatcacc
aagcacaaatacagcggagagacacgtcagagcaatggagccaggctgtctgtcatggac
cccaccgaatcgtctccctctatcctggacagtttccaggcgggggaagtcccggctggt
cagagtgtggagcttccctgcatggcagcagggtaccccagccccacggtgcgctggcta
aaggacggacgcccgcttccctccgatgcacgctggacgcggcgcctcacgggtctgacc
atcagtgacctcaggcaggaggacagcggtagctacgcctgtgaggtcaccaacagcttc
ggctcgaaggaggtgtccggagcactctatgtcatagaccccctgcgagtgaccctctcc
cctaagagtctgaagacgggcatcagcagtaccctgttctttacctgtgctgtggagggt
tcgccagagtacacagtggcttggtacaggaacacagaacctatagtcccagaccagcac
atctctatacagggctcccacaacgacaccctgcagatcacagccgctcagaagagccac
tctggggcctaccagtgctttgcctcccgcaagggccacaccgcccaggacttctctatc
atactgctggaggacggcactcctcgtatcgtgtcttccttcagtgagcgcgtggtcgcc
cccggtgagccattctccctgatgtgtgcctccaagggagccccacccccctccatcacc
tggacgctggacgacgagcctgtggtgcgagactccgcctacaagaccagccagtacacc
ctatcagacggcctgaccgtgtcacatgtcaacgtcagcagcccggccatccgtgacggg
ggagtgtatcgctgcgccgcacgcaactcggccggtagcgccgagtaccaagcgcgcata
aacgtaagaggttctcctaggatcagggagatgcgtgacatcacggctgtggcaggaagg
aacacctttataacctgtcgtgtgattggttacccctactactctatcaagtggtttaag
gacggcatgctgctgcctgacaaccatcgccaggtggtgtatgagaatggaaccctgagg
ctgagtgatgtgcagaagggcatggacgagggtacctacctgtgtagtgtgctcatccag
ccacagacctccatcgaccagactgtccacgtcactgtcaaagtgccacccctgatccag
ccctttgatatcccctccacgtcggtgggaaagctgatgtacatcgcctgcgtggtgtcg
tcaggtgacatgcccatccgcatcacctggcacaaagacgggcaactcatcgtgcctggt
tccgcctctggtgttggcatagagaccaaggaattcatgagctccttgcagatctccaag
gtgacgctgaagcacaacggcaactacacctgcatcgctagcaacgccgcggcaaccgtc
agctgggaaagacagctggtcgtcaccgttccccctcgcttcgtggtccagcccaacaac
caggatgggatctatgggaaggcaggagtactaaactgctctgtggagggatacccccct
cccaaagtcatgtggaaacacgccaaaggtatagggaacccccagcagtaccaccctgtg
cctctgactggtcggatccagatcatgttcaacggctccctgctgattcggcacgtctta
gaggacgaccgtggatactacctctgtcaggcctccaatggagtgggctctgacatcagc
aagagcatggtcctcaccgtcaagattccagccatgatcacgtcgcaccccaacaccacc
atggccatcaagggccagatgaaggagctgaactgcacagcgcggggcgagcagcccatc
atcatccgctgggagagaggcgacactgtcatcgatgccgagaggaacccccgctactcc
atcaccatcaacaagaagggggacgaggtcatctccacactcaagctgaagccagcggag
cgcggggactcagtcttcttctcctgccacgccatcaactcatacggagaggggcgagga
ctcatccagcttaccgtgcaagagcctcctgaccctcctgagttggaggtgagagaggtg
aaggaccgaagtatgaacctgcgctggatccagaggttcgatggcaacagcatcatcacc
agctacgacatcgagtataagaacaagtctgatacttgggatcacaagtacaccaccagg
aacatctcccccactaacaaccaggctaacatcgtggagctgcaccctgcctgtgtctac
agcatccgcatgtactccttcaacaagatcggacgcagccagcctagcaaggagctcacc
atcagcactgaggaagcacaacctgatgggccccctatggaagtgatcctccaaccaatg
acgtctcagagcatacgggtcacatggagggcccccagaaaggagcttcagaacgggttg
atccgggggtaccagatcggttaccgtgagaacgggccgggcagtaacggccaatacagc
attgtggagatgaaggccacaggggacagtgaggtgtacaccctggacaacctgaagaag
tttgcccagtatggagtggtggtccaggccttcaacagggctggcactggtccctctagc
actgagatcaacgctaccacactggaggatgtgcccagccagccgccccagaacgtgcgg
gctatctcggtgacctcagacgaggcggtgatcacgtgggcagagccaccgcgtctgacg
ctgcatggcgtgttgaagggctaccgcgtggtgttctggtccctcttccccgacggaggt
gggtgctgtgggggccaggcacaggggccgatgcagaaatggggagaaatgcaaaacatc
actacaactcgtgagcaggtggagctgagagggctggagaagtttactaactacagtgtc
caggtgctggcctacacacaggctggggacggggtcaggagcaatgtcctgtacatccaa
acccgcgaggacctcccaggtcctccagctggtatcaaagccgtgccctcatctcccaac
agtgtggtcgtgtcctggctacccccccttaaacccaatggtgtcatccgcaagtacacc
atctactgctccagcccaggctccggacagcctgctcccagtgagtatgaggccaaccca
gagatgttgttctacaggatcacccatctgacccgcggtaaacagtacctcatctgggcc
tccgccgtgacaactgctggccgcggcaacatcagcgaaaaggtcaccgtggagcctgct
gggaaagccccagctaagatcctgtcgttcgggggcacagtgactactccctgggtgaag
gaggtccgtctgccctgcagctcagtgggagaacccacccccaccatcaaatggaccaaa
gacagtgaggactcgactatccctgtgactgtggacgggcagcgtcagatcctgtccaac
ggtactctggtgttacgttccgtcaaagctgaggattctgggtactacacatgcacggcc
accaacaccctgggctttgacaccatcatagtaaacctactggtgcaagttcctccagac
cagccccgtctgaccgtctccaccacttccacctcttccatcaccctggcctggatccct
ggggacaacggaggcagctccatcagaggtttcgtcctgcagtactcagtggacaacaca
gaggagtggagggatgtgttcatcagttccagtgagcgttccttcaggctggacaacctg
cgctgtgggacctggtacaaggtcaaactggcagccaagaacagtgtgggctcaggacgc
atctctgagatcatcgaggctaagacccacggacgagagcccgtgttcaacaaggagcag
cccctgctcacccacatcaactccacccacgcggggctcaacctgcagggctggaccagc
ggcggctgccccatcaccgctctactgttggacttccggcccaagggcacgtgggcctgg
cagagcctgaaggccaacgccacggcccagctattcctcagcgagctgcgggaggccacc
tggtacgagctgaagatgaaggcctgtaatagcgccggctgtgggaaccaaagctcccag
tttgccaccacagactatgacggcagtaccatccctcctataagctcggcccatgaggac
agagatgatgtgaagaagctgttctccatcggttctcctgtcatcctggtcaccctgggc
gtcgccctgctcttcatcatccgcaagaaacgcaaggagaagagactcaaacgactcaga
gatgctaagagccttgcagagatgcttatcagcagtaagaacaaccgcagcatggacacc
ccagtgaagggtcctccccagggccctcggctccacattgacatccctcgtgtccagctg
ctcatcgaggacaaggagggcatcaagcagataggtgaggacaaggcagtggccccagtg
acggacacagagttcagccaatcagtgaatccacagagcttctgcacgggtgtgtctctg
caccatcctgccctcatccagaacacagggcccttgattgacatgtcagacatccgccct
ggaaccaatccagtgtcgaggaagtgtgtgaagtcagcccacagctccagaaaccgctac
tccagccagtggaccctgagcaggccgggccagagccaatcaacagcctccgcaaggact
ctgacctctgactggcgcaccatgggctcccacggcatcaccgctaccgagagtgacagc
tacagcgcaagcctgtcccaggatactgacaagggtcgtaacagcatggtgtccacagag
agtgcgtcatctacgtatgaggagctggcgcgggcctacgaacacgccaaactggaggag
cacctgcagcatgccaagttcaccatcacagagtgcttcatctcagacagctcctctgac
cagatgaccacaggcaccaacgacccggccgacagcatgacatcactcagcaccccatcc
gagacaggcctgtgtcgcttcaccgcctcgccacccaaaccccaggactacgaccgcggc
agacctaccaacgttgccgtgcccatcccccaccgtgccaacaagagtgaattctgcaac
ctcccgctctacatgaagacggatcctttcttccggaagcaggcagaactgcatgaccca
tgccctgcggtcccgcccagggaggcctccatccgcagcctggcacagcgggcgtaccac
acccaaggacgtcatatgactctggacccgtccaagcaacaggccctgacgctaggccac
tctgggttgggcagtctgggcgtgagctcaggcactgccaccctgccccagaggactctc
accatgccctgctccaaccctgcagccacagcctccacttccagcaccagcagcaacccc
actggctccagcacaaagatggggggctccagagactcactgctagagaatagctcctca
gcgctgggcagactgcagaagcaaggggttggggcctactctaagtcttacacactggtg
tag
DBGET
integrated database retrieval system
