Oncorhynchus tshawytscha (Chinook salmon): 112259100
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Entry
112259100 CDS
T05605
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112259100
Transcription factors [BR:
otw03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
112259100
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
112259100
NCBI-ProteinID:
XP_042185566
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All DBs
Position
LG01:complement(10440032..10636880)
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AA seq
781 aa
AA seq
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MMSSKQATSPFPPATEEEEAMGQDDVGWANEDRESQDQPASPTLHSKPLPEEHQPIRDSQ
PESAWKSIGSTQTDNGSSKGCSLYSYRNNSTSPPKPEECSRERGEQLGGSTFGTLERRKG
SLADVVDTLKQKKLVELTKTEQDESTCMERLLSKDWKDRMERLNASKLLGEVKGTPESLE
EKERQLSTMIGQLISLREQLLAAHDEQKKMAASQMEKQRQQMELARQQQDQIARQQQQLM
QQQHKINVLQQQIQVQGHMPPLMIPVFPHDQRSLAAAAAAAQQGFLFPHNMSYKPGDNYP
MQFIPSTMAAAAASGLSPLQLQFPYFLSLQQLYAAQLASMQISPGAKMASLPQPPNSSDP
LSPPGLKSEKRVLSPVTHVKEEGSTQPLNLSARSKTGEPHRSPSSPSHTLFPSNKTSPIT
MGKGRIPSPLSNMGRGSLGGCSEHTHMPAHTLTDILSSLNSTALFGDQDAVMKAIQEARK
MREQIQREQLHHQQQQSLEAKLTALSGMSLSNGNKERMHFESLSQHLGNLGEDGKMGHRV
IDLTRPEDLHGGASTTEARVFREARGRNSAEPHIKRPMNAFMVWAKDERRKILQTFPDMH
NSNISKILGSRWKSMSNQEKQPYYEEQARLSKNHLEKYPNYKYKPRPKRTCIIDGKKLRI
GEYKQMMRSRRQEMRQFFSVGPQPQIPISNSAGGLYPGAITMATATPSPHLTSDCSSASA
SPEPAIPVIQSTFGVVKPEPVAMVTGDHPVNGEDEIDMYEDFEDKSDYSSDHETREPVSA
N
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcttccaagcaagccacatctccgtttcccccagcgacagaggaagaggaagcg
atgggtcaggacgatgtgggctgggccaatgaggacagagaaagccaggaccagccggcc
tcacccactctgcacagcaaacccctcccagaggagcaccagccaatcagagacagccag
cctgagtcggcgtggaagagtataggctctactcagacggacaatggtagcagcaagggc
tgttccttgtactcctaccggaataactctacctctccaccaaagcccgaggagtgttct
cgggagcggggcgagcagctaggcggatcgaccttcggaacacttgagcgccgcaaagga
agcctggccgacgtggtggacacactgaaacaaaagaaactggtggagctgacaaagacc
gagcaggacgagtcgacctgtatggagagacttctgtctaaagactggaaagacaggatg
gaaagactgaatgccagcaaactcctaggagaggtcaaaggtaccccagagagtttggag
gagaaggagcggcagctgtccaccatgatcggccagcttatcagcctgcgggagcagctc
ctggcggcccacgacgagcagaagaagatggctgcgtcacagatggagaaacagaggcag
caaatggagctggcccgccagcagcaggaccagattgcgaggcaacagcagcagctcatg
cagcagcagcacaagatcaacgttctacagcagcagatacaggtgcagggtcacatgcct
cctctgatgatcccagtgtttcctcatgaccagcgatctctggctgctgccgctgctgct
gcacagcagggcttcctcttcccacacaacatgtcctacaaaccaggtgataactatccc
atgcagttcattccatccacaatggcagctgcagccgcgtcaggactgagcccgctacaa
ctacagtttccctatttcctctcattgcagcagctgtacgccgcccagctggccagcatg
cagatctcacctggagccaaaatggcctcactgccacagcctcccaactcctcagacccc
ctatcgccccccggcttgaagagtgagaagagagtgttgagtcctgtcactcatgttaag
gaggaagggtcgacgcagcccctgaacctctcagcccgatccaagactggcgagccccac
cgatccccgtcctcgccctcacacaccctgttccccagcaacaagaccagccccatcacc
atggggaaggggcgcatccccagccctctctccaacatgggcagaggctcactgggtggg
tgcagtgaacacacacacatgcctgcgcacacactgacagacatcctatccagcctgaac
tccacagcgttgtttggggaccaggacgcggtgatgaaggccatccaggaggcgaggaag
atgagggagcagatccagagagaacagcttcatcatcagcagcagcagagcctggaggcc
aagctcacagccctgagcggcatgagcctcagcaatggcaacaaggagcggatgcacttt
gagagtttgagtcagcacctgggcaacctgggagaggatggaaagatgggccacagggtc
attgacctcaccagacctgaggatcttcatggtggtgccagcactacggaagcacgggtc
ttcagggaggccaggggcaggaacagtgccgagccccacatcaagaggcccatgaatgcc
ttcatggtgtgggccaaggacgagaggaggaagatcctgcagaccttccccgacatgcat
aactccaacatcagcaagatcctgggctctcgctggaagtccatgagcaaccaggagaag
cagccatactatgaggaacaggcccgtctcagtaagaaccatctggagaagtaccccaac
tacaagtacaagccccggcccaagaggacctgcatcatcgacgggaagaagctgcgcatc
ggggagtacaagcagatgatgcgctcgcggcgacaggagatgaggcagttcttcagtgtg
gggccacagcctcagatccccatcagcaacagcgctggaggcctctacccgggcgccatc
actatggcgacagccacgccttcaccgcacctaacatcagactgctccagcgcgtcggcc
agccccgagcccgcaatccctgtcatccagagcacgttcggcgtagtcaagccagagccg
gttgccatggtgaccggtgaccacccggtcaacggggaggacgagatagacatgtacgaa
gactttgaggacaaatcggactacagcagtgaccacgagacacgggagcctgtcagtgcc
aactga
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