Oncorhynchus tshawytscha (Chinook salmon): 112259123
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Entry
112259123 CDS
T05605
Symbol
med13a
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13-like isoform X1
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112259123 (med13a)
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
112259123 (med13a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Med13_N
Motif
Other DBs
NCBI-GeneID:
112259123
NCBI-ProteinID:
XP_042182759
UniProt:
A0AAZ3RSB6
LinkDB
All DBs
Position
LG09:complement(34040251..34156428)
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AA seq
2193 aa
AA seq
DB search
MSSCFVPNGASLEDCHSNLFCLADLTGIKWKRYVWQGPTSAPILFPVTEEDPILCSFSRC
LKADILSVWRRSQRPGRREIWLFWWGDDPNFAELIHHELTAEEDGVWESGLSYECRTLLF
KAIHNLLERCLMNRSFVRIGKWFVKPYEKDEKPINKSEHLSCSFPFFLHGESNVCTSVEI
NQHQPVYHLSDEHLTLAQQASSPFQVILSPFGLNGTLTGQSFKLSDPPTQKLIEEWNQFY
PISPSSKDKDKQGSPSEDKMEDMDWEDDSLAAVEVLVGGVRMVYPACLVLVPQSDIPAVA
PQGSSHCTTVYTGGLQVPASQRDPAISSVTLTPPTSPEEAQTVRRFRTSPFPPPQVDSQS
AQKWVKMSSAVDGFSVDSTSHHEGKIPRRLASQVVERVWQECNINRAQNKRKFSVTANGT
CEEELMEKVGTWDFVESAQRSHCNCSRHKSLKQRGGSIPGQPQSAGQPTHTQPPTKHKAG
GDKPEKGDKQTKRPQTPFHHRSTACDDVTKETEVVAGQRLAMRSQQAGGGFSGLRPSDSV
TKPPQLHGGGVGSGGSSSEMTGSPQPPPLSPHPCERDRGEETGNGSMKNPSTPHSQHFYQ
PPPEPCLVGQKGGEGEPRRLDGLSLHFHHPHTSYPSEPLEPTMYVGSAVNLEEDGSPAPW
RFFNLPRRKEAEIPTPTLPGDKLRDRERDEASGGQEVVSVTELMATSKRPLKVSEERVQM
YLQRRNQYLAAAITDDNDHEPEVDPYAFEDGDVKFSFSDKKDKMGGERQPGKKHKGEDGA
AGLSDDAARAAAHARTASTSLIHETDLAVSINDLDNLFNSDEDELTPGSRRAVNGTGDKF
GNKEPKPAILDPVSCISSADLHQMFPTPPSLEQHIMGYSPMNMGSKEYGGLEVGQGMTNL
DGTSSLGGHFKIEVEEGYCSPKPQEIKDFSFVYKPELCQAFVGCSMFAPLKTLPSQCLPP
IKMPDECIYRPSWTTVGKQEMLNHPHVPSMAYLNKDSNIPSVGSAMDQDYSQSYTPQTHT
PFMSNSAPPSNSGTGILPSPATPRFSAPTPRTPRTPRTPRGPASVQGSLKYENSDLYSPA
STPSTCRPLNSVEPATVPSIPEAHSLYVTLILSESVMNLFKDCNFDSCCICVCNMNIKGA
DVGVYLSDPTGEAQYPCTCGFSAVVNRRYGNSSGLFLEDELDIIGRDSDVSREAEKRFEA
LRQHSLERTGGGGRGERVPDELILLLQDQCTNPFSPMAGMEPDSLAARGPGGCPVPACVR
VEERDFHSDCYMALEHGRQFMDNMSGGKVDEALVKSTCLHRWSKQNAVDISALCSQDVLR
VLLSLQPVLQDAIQKKRTVRSWGVQGPLTWQQFHKMAGRGSYGTDESPEPLPIPTFLVGY
EYDFVVLSPFGLPYWEKLLLDPFGSHRDVGYLVVCPDNEALLQGAKNFFRDLTAVYESCR
LGQHRPISKDHPDGIVRVGGAAAKKLAEQPVSDWFLKAASGNSDAFAKLKLYAQVCRYDL
APYLAAQPLHSSLLAQPTPPPASSQSSSMQSSGSSSTTSTGPQNSVTPGGPSLPNSSGSA
PSNSTGVANSTNSVASSGSAPSSGMQSAKPSSFPPFGTMGLQNQGLDGGTQGGQLGQQNT
GLPGGDSASQAPTEPLESTMEREKVGVPTDGESHAITYPPAIVVYIVDPFTYEEPEAGSS
VWTLGLLRCYLEMLQFLPPHIRNAVSVQIIPCQYLLQPVRSEERHIYAQHLKSLAFSVFS
QCRRPLPGSTNVKSLTGFGPGLAIDTALKSPERPECLRLYTPPFILAPTKDKQTELGETF
GEASQKYNVLFVGYCLSHDQRWLLATCTDLYGELLETCIISIDVPNRARRKKGSARRSGL
QKLWDWCLGLVQMTSVPWRVVIGRLGRMGHGELKDWSILLSRRNLQSLSRRLKEVCRMCG
ISASDTPSILSACLVAMEPQGSFVIMPDSVSTGSVFGRSTTLNMQTSQLSTPQDTSCTHI
LVFPTSAFVQVASSNYTTDTNIDIAFNPIPDGSDAIGIFDLLDQENDLVDPDIINILPAS
PTTSPVHSPGGHYHQGGDGSKGQSTDRMESHDEAPNILQQPLALGYFVSTAKAGPLPDWF
WSACPQAQNQCPLFLKASLHLHVSSVQSDELLHSKHSHPLDSNQTSDVLRFVLEQYNALS
WLTCDPATQDRRSCLPIHFVVLNQMYNFIMKML
NT seq
6582 nt
NT seq
+upstream
nt +downstream
nt
atgagttcttgttttgtaccaaacggggccagcttggaggattgccactccaatctattc
tgtctggctgatctgactgggatcaaatggaagcggtacgtgtggcagggccccacctct
gcgcccatcctcttccccgtgaccgaggaggaccccatcctgtgcagcttcagccgctgc
ctcaaggcggacatactgagcgtgtggcggcggagccagaggcctggacgtagagagatc
tggctgttctggtggggggacgaccctaacttcgcagagctgatccatcacgaacttaca
gctgaggaggacggtgtgtgggagagcggcctgtcctatgagtgcaggacgctcctgttc
aaagccatccacaacctgctggagcgctgtctcatgaaccgcagcttcgtacgcatcggc
aagtggttcgtcaagccctacgagaaggatgagaagcccattaataagagtgaacacctg
tcgtgctcgttccccttcttcctccacggggagagtaacgtgtgcaccagcgtggagatc
aaccagcaccagcctgtctaccacctgagtgacgagcacctcaccctggcccagcaggcc
tccagccccttccaagtcatcctgagtccgtttggtctgaacgggactctgacgggtcag
tcgttcaagctgtcagaccctcccacccagaaactgattgaggagtggaaccagttctat
cccatcagccccagctctaaagacaaggacaagcagggctcgccatcggaggacaagatg
gaggacatggactgggaggacgactccctggccgctgtggaggtccttgtcggtggtgtg
aggatggtgtacccagcctgcctggtgctggtgccccagtctgacatcccagctgtggcc
ccccagggttcctcccactgcaccaccgtctacacgggtggactccaagtgcctgcatcc
caacgagaccccgccatctcgtcggtcaccctcacgccccccacatcacccgaggaggcc
cagacagtgagacgattcagaacctctcccttcccacctcctcaagtggactcccagtcg
gctcaaaagtgggtgaagatgtcgtcggctgtggacggcttcagtgtggacagcaccagt
catcacgaggggaagatccctcgcaggctagccagccaggtggtggagagggtctggcag
gagtgcaatatcaacagagctcagaacaagcgtaagttctcagtgacagccaatgggacc
tgtgaggaggagttgatggagaaagtaggaacctgggactttgtagagtcagcacagagg
tcacactgcaactgctccaggcataagtctctgaagcagcgaggtggcagcatccccggc
cagccccagtcagcaggccagcccacccatacccagccacccacaaagcacaaggctggg
ggtgacaagcccgagaagggtgacaagcagaccaagaggccgcagacgcccttccaccac
cgcagcaccgcctgcgatgatgttaccaaggagacggaggtggtggcgggccagcggcta
gccatgaggtcccagcaagcggggggtggtttctccggcctccgcccctctgacagtgtc
accaagcccccccagctgcatggcggaggggtgggtagcggcggctcttcctcagagatg
actggttccccccagccccctcccctcagcccccacccctgtgagcgtgaccgaggagag
gagacaggaaacggctctatgaagaacccctcaacaccccacagtcaacacttctaccag
ccgcccccagagccctgcctggtggggcagaagggtggcgagggggaaccccggaggcta
gatggcctgtccctgcacttccaccacccccacacgtcctacccctcagagcccctggag
cccaccatgtatgtaggctctgctgtaaacctggaggaggacggctcccctgcgccatgg
aggttcttcaacctacccaggaggaaagaggccgagatacccacgccaacgctgcctggg
gacaagctgagggacagggagagagacgaggcctcgggaggacaagaggtggtttctgtc
acagaactgatggccacttccaagcggcctctgaaggtgtccgaggagcgcgtgcagatg
tacctccagcggaggaaccagtacctggccgccgccattaccgacgacaatgaccacgag
cctgaggtggatccgtacgccttcgaggacggggacgtcaagttttccttctctgacaag
aaggacaagatgggcggcgagcgccagcccgggaagaaacacaagggggaggatggagca
gcaggtctgtcagatgacgcagcgcgggcagccgcacacgcacgcactgcctccaccagt
ctgatccatgagacagatttggctgtgtccatcaacgacctggacaacctcttcaactca
gacgaggacgaactcacgcctggttccagacgagcagtgaatggaacaggtgataaattt
ggcaacaaggaaccaaagccagccattctggacccagtctcttgcatcagctcggcagat
ttgcaccagatgttccccactccccccagcctggagcagcacatcatgggctactctccc
atgaacatgggcagtaaggagtatggcggcctggaggtcggacagggcatgaccaacctg
gacggtacctcgtcccttgggggacacttcaagatcgaggtggaggaaggctactgcagc
cccaagccgcaggaaatcaaggacttctcgtttgtgtacaagccggagctgtgccaggca
tttgtgggctgctccatgtttgcccccctcaagaccctgcccagccagtgtctgccccct
atcaagatgccagacgagtgcatctacaggcccagctggaccaccgtgggcaaacaagag
atgctcaaccacccccatgtgccttccatggcctacctcaacaaagacagtaacatcccc
agtgtgggcagtgccatggaccaggactacagccagagttacacaccccagacccatact
cccttcatgtccaacagtgccccccccagcaacagtggcacgggcatcctgccctcaccg
gccaccccacgcttctccgcccccacaccacgcactccccgtaccccacgcacccccaga
gggcccgccagtgtccagggctcgctcaagtacgagaactcggacctctactcgcctgcc
tctaccccctccacctgtcgacccctcaactcagtggaacctgccaccgtgccctccatc
cccgaggcccacagcctctacgtcaccctcatcctctctgagtccgtcatgaacctcttc
aaggactgcaacttcgacagctgctgcatctgcgtgtgcaacatgaacatcaagggggcc
gacgtgggggtgtacctgagcgaccccacgggagaggcccagtacccctgcacctgcggc
ttcagcgcagtcgtcaaccgccgttacggcaacagctcgggcctcttcctggaggacgag
ctggacatcatcggacgcgactcggacgtcagccgcgaggcggagaagcgcttcgaggcg
ctgcggcaacactcgctggagaggacagggggaggagggaggggggagagggtaccagac
gaactgatcttactgctacaggaccagtgcaccaaccccttctctcccatggctgggatg
gagcctgacagcctggcagcgcgggggcccgggggttgtccagtgccggcctgtgtgagg
gtggaggagagggacttccacagtgactgctacatggccctggagcacggccgccagttc
atggacaacatgtcaggaggcaaggtggacgaggccctggtcaagagcacctgtctccac
cgctggtctaaacaaaatgcggtggacatcagtgctctgtgctctcaggacgtgttgcgg
gtgctgctctccctccagcctgtactccaggacgccatccagaagaagaggacggtgcgc
tcctggggcgttcagggacccctcacctggcagcagttccacaagatggctggacggggc
tcctacggcacagatgagtctcctgagcccctgcccatccctaccttcctggtgggttat
gagtatgactttgtggtgctgtcgcccttcggcctgccctactgggagaagctgctgctg
gaccccttcggctcccacagggacgtgggctatctggtggtctgtcccgacaacgaggcc
ctgctccagggggccaagaacttcttcagggacctcaccgccgtctacgaatcatgtcgt
ctgggccaacaccgccccatctcaaaagaccacccggacggcatcgtgagagtgggtgga
gcggccgccaagaagctggcagagcagcccgtcagcgattggttccttaaggctgccagt
ggtaacagcgacgccttcgccaagctcaagctttacgctcaagtctgccgctacgacctt
gctccatacctcgctgcgcagcctttacacagctccctcctcgcacagcccaccccccct
cctgcctccagccaatcctcatccatgcaatcctccggctcctcctccaccacctcgacc
ggcccccaaaactcagtgacccccggaggcccctccctccccaacagcagcggcagtgcg
cctagcaacagcacgggtgtagccaacagtaccaacagcgtggcatcatcaggtagtgcg
cccagcagcgggatgcagtctgccaagcccagctctttccctccctttgggaccatgggc
ttgcagaaccagggcctggatggtggcacccagggagggcagctgggccagcagaacaca
ggactccccgggggggactcagccagccaggcacccactgaacccctagagagcaccatg
gagcgagagaaggtgggtgtgccgacggacggagagtctcacgccatcacataccccccg
gccatcgtggtgtacattgtggaccccttcacctatgaggagcctgaggcggggtccagt
gtgtggaccctgggactgctgcgctgctacctggagatgctccagttcctcccaccacac
atccgcaacgctgtctctgtacagatcatcccgtgccagtacctgctccagccggtgagg
agcgaggagcgtcatatctacgctcaacacctcaagtccctggccttctcagtgttctcc
cagtgcaggcggcccctccccggatccaccaacgtcaagtcactaaccggctttggccct
ggcctggccatcgacactgcactgaagagcccagagagaccagagtgtttgcggctatac
acgcctccgttcatcctggcgccgaccaaggacaagcagacagagctgggggagacgttc
ggggaggcctctcaaaagtacaacgtgctgtttgtgggctactgcctgtcccacgaccag
cgctggctcctggccacctgcaccgacctgtacggagagctgctggagacctgcatcatc
agcatcgacgtgcccaacagagcgcggaggaaaaaaggctctgcccggaggtcgggcctg
cagaagctgtgggattggtgcttgggactggtgcagatgacatcagtgccatggagggtg
gtgattggtcgactgggcagaatgggtcatggcgagttgaaagactggagtattctgttg
agcaggaggaacctgcagtctctgagtcgccgtctcaaggaggtgtgtcgtatgtgtggc
atctctgcctccgacactcccagcatccttagcgcttgcctagtcgccatggagcctcag
ggctcctttgtcatcatgccagactctgtgtctacaggctcagtgttcggccgcagcacc
actctgaacatgcagacgtcccagctgagtactcctcaggacacatcctgtacccacatc
ctggtgttccccacctcagcctttgtccaggtggctagctccaactacactactgacacc
aacatagatatcgccttcaaccccatccccgatgggtcggacgccattgggatctttgac
ctgctggaccaggagaacgacctggtggaccccgacatcatcaatatcctgcccgcctcg
cccaccacctcgcccgtacactcccccggcggccactaccaccaggggggagacggcagc
aagggccagagtacagaccggatggagtcccacgatgaagctcctaacatcctgcagcag
cccctggccctgggctactttgtgtccacagccaaagccggcccactgcctgactggttc
tggtcagcctgccctcaagctcagaaccagtgtccccttttcctcaaggcctctctgcat
ctccacgtgtcttcagtgcaatcagatgaactgctgcacagcaaacactcccacccactc
gactccaatcagacctcagacgtgctcagatttgtgctggagcagtacaatgccctttcc
tggttgacgtgtgaccccgcgacgcaggatcggcgctcctgtctgcccatccactttgtg
gtgctcaaccagatgtacaacttcatcatgaagatgttgtaa
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