Oncorhynchus tshawytscha (Chinook salmon): 112259388
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Entry
112259388 CDS
T05605
Name
(RefSeq) transcription factor SOX-30
KO
K09271
transcription factor SOX15/30
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112259388
Transcription factors [BR:
otw03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
112259388
BRITE hierarchy
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GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
112259388
NCBI-ProteinID:
XP_024289861
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Position
LG09:complement(55047075..55057371)
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AA seq
634 aa
AA seq
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MFATMDRHPKRRAQMTFKKSEPSPNEDDSGPPASKKNASESEEPASSTERHRGDGEQKRP
VGRPKGSGRSGNSVSGDVQVRPKVIFKADNKWGGDGELMPTSSSHRKGAIQGRTVTFEKE
SASSLASKQSKATFDYPTTSQVLVIKEEIITTAPGQAKVKVDQEPATTHHQGCPPVAPTL
DFSKPIHVVHENGMTFTVLDGKAITLSKVPYPPLVHVNVPPPPLKVKTRGMNLTMPPSEA
ENLEVPQSIDRNGYIKRPMNAFMVWARIHRPALSKANPTANNADISVQLGIEWSKLTEEE
KRPYYVEARKLKDKHRQEFPGWIYQPRPGKRKCYPSVMSFAPEPSCCSAGTSGPAAESYP
MANTNTSSCVPYTQATGSNDHGLQVAITAAPNASQTTSPVSIFFQTTACPHPHPTATTSG
GKPAERKHEASHSASNPEEAPKPRKISRQQAYYNSANEMPSTSMASSSRGLQMPLPNMAH
PHMYPPSPIPHPVGLFPTPRFPFAPPYFMPGPNFYPPGSYPYLHSPYSYPVLQPQDFSNP
MATPMATPGYPYDDNYDQHESTFSLLNRDYPFRQSGEGGQRCQGQAPTASELLGSVPLLD
VRALENVFTNSASVQEVQVPNEEDEEEVRVMRIL
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgtttgccacaatggacaggcatcccaagcgaagagcgcaaatgacattcaagaaaagt
gaaccaagtccaaacgaagatgacagtgggccaccagctagtaagaaaaatgcaagtgaa
agcgaggaacctgcatcttcaacagagaggcatcgaggtgatggagaacagaaaagacca
gtgggtaggcctaaaggcagtggacgttctggaaatagtgttagtggagatgttcaggtt
aggcctaaagttatttttaaagctgataataaatggggtggtgatggagagctaatgccc
acaagttcatcacaccgcaagggagccattcaaggtcgaacagttacatttgaaaaggag
agcgcatcatcattagccagtaaacagagtaaagccacatttgattatcccacgacatct
caagtgctggtcatcaaggaggagatcatcacaactgctccaggtcaggccaaggtcaaa
gttgaccaagaacctgcaacaacgcatcatcaaggatgtccacctgtggctcccacttta
gacttctccaaaccgatccatgttgtccacgaaaatgggatgaccttcacagtattggat
ggtaaagccataacgctcagcaaagttccatacccaccacttgttcatgtgaatgttccg
ccacccccattaaaggtgaagactagagggatgaatctcaccatgccaccatcagaagca
gaaaatcttgaagtaccacagagcatagacaggaatggctacatcaagaggcctatgaat
gcgttcatggtctgggcgagaatccacaggcctgccctgtccaaggccaacccaacagcc
aataatgcagacatcagtgtgcagctaggaatagagtggagcaagcttactgaggaagag
aagaggccctactatgttgaagcacgtaaactcaaagacaagcacagacaggagttccca
ggttggatctatcagcccagacctggaaaaagaaagtgctacccttctgtgatgtccttt
gctcctgaaccatcctgctgctctgcagggacaagtggacctgcggctgagtcttatccc
atggccaatactaacaccagctcctgtgttccatacacacaggccacaggctctaatgac
catggtctccaggtggctataacggcagctccaaatgcctctcagactaccagcccagtc
tccatattcttccagactactgcctgcccacatccccacccaacagccacaacctctggt
ggtaagcctgcagaacgcaagcatgaagccagtcactctgccagcaatcctgaagaagct
cccaaacccagaaaaatcagcaggcaacaggcctactacaattctgccaatgagatgccc
tcaacaagcatggcatccagctctagaggtctccaaatgccactccctaacatggctcac
cctcacatgtatcctccatctcccataccacatccagtgggcctcttccctacccctcgc
ttcccctttgctccgccctacttcatgcctggacccaatttttatcctccaggatcatac
ccttacctacacagcccatactcctacccagttctccaaccccaggatttctcaaacccc
atggctactcccatggctactccgggctacccctatgatgacaactacgatcagcatgag
tccacattttcccttctcaacagagactacccgtttcggcagagtggagagggcgggcag
agatgtcaagggcaggcccccactgcctctgagctcctaggttcggtcccacttctggac
gtacgtgccctggagaacgtcttcaccaactctgccagtgtccaggaggtccaagtcccc
aatgaggaggacgaggaagaagtgcgtgtgatgagaattctctag
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