Oncorhynchus tshawytscha (Chinook salmon): 112259485
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Entry
112259485 CDS
T05605
Name
(RefSeq) protein Shroom3 isoform X1
KO
K18625
protein Shroom
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
otw04812
]
112259485
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Others
112259485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ASD2
ASD1
Motif
Other DBs
NCBI-GeneID:
112259485
NCBI-ProteinID:
XP_042182368
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All DBs
Position
LG09:complement(7741205..7863779)
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AA seq
2399 aa
AA seq
DB search
MDSSLPSYSTVIHRGKTLLLEARLLGGAPWGFQLKGGLEHGEELIISKVEGGGKADLLEH
PLLPGDQVVVINDVELSGFRQEAVSLVKGSYKTLRLTIRRECCPGSCCSDPTLTPLTLPN
LTPLPIGPPSDHHTPLSSVHGPPRENRGGCSGGVKLRIKNRRSEPVSRPHSWHATKLGEG
QPDPSMMQISQDPPWHHTYPSSASTTDLSGYDPGYLRKSPDQYSSRGSMESLGEHHGHPA
YSSSCHQLSASKSSNSMDHLHSKRDSAYSSFSTSSSIPEYLAAAPTFGKERSYSMETVPQ
RGGISGGGGAGAEGMQQADIRYVRTVYDPQQGGAQEHEVSSASAALLRSHETGRAGSCSV
GGAACYRATSSSSNSSGGSSGGGNHGNNPNRHSVGPIWGQSASRSSYESLKGAPAPPMRS
DSYAAIRNHERPNSWSSLDQARSLRALHKGSTSSWYHSSGSVASGSGKGSFGAEGQLHTV
IEKSPESSPTTKPKQGVGQGFPPPPEPQQTSTQSGCLMLPQGIYPVPPPEPHYAQMPTSS
PNPSSMYPALARESSLSRQRELQGLRLGVSVDTGMAVVVENGYQRNPSISSYVTSSGQPQ
HPDFAQPPPKQPAHPTQPTDRVGGKSGYEETQTKLGLYRSHLKGEGQTVSQRQSQRSQGQ
GQGQSQDQGQGQSQGQDQSQGQDQSQGQGQGQGQNQGQGQGQSQGQGQIQGQGQGQSQSQ
GQSQDQGQSQGQGQSQGQGLGQSQGQGQASRPSSVQSIGQSIGQSIGQERRDPYTPVQPR
GERLPRYSQGSESCPEHHRQGQVREEGQVRHTEPRPHATHPVAGTTMPSKIAQGHVPQGS
NSSSTPAQVSDQRVEQRAQGPEQQVEQRAQGPDQQVEQRAQGPDQQVEQRAQGPFQQVDQ
RAQVSDQRVEQRAQGPDLQVNDHRSRSPLWYYSDPIPPQPQRDQRGPEHPLTQLQNVLAD
VQCCDSPESSANSQSSHQRSLSVLEKVNRFEGREQSHRQGKQRSKSTSANHTNPRPCSSR
PTQPQSQPQSQPQSQPQSQPQSQPQSQPQSQPQCQPQSQPQSQPQSQPQHHERAGMDDLR
STLERTSIPSITCRTLSSSSSSHHGKTTVAHEGHHYVEQQRPGSCDQTQSSRYPHHHHPN
PQDPRPGSALQRSRSTFQLGSQEGHNRDRDGDREFHWRDDLQDLLGTIQDTSFNRAYRNS
IKDAQSKVLRSTSFRRRDLGISVNNHSPPIPAKHLSLERKGPKTSPKPSIVSTTVQASNR
ALALATSPHTPKERLTVTVSDPVPIPAPATFLSPHTPKERLTVTVSDPVPIPAPATFLSP
HTPKERHVVTPEPDRFGPPELLSVLAMGPPVPARIGGRKRLTMEKKKRSYSEPENMHEVG
LESDPRRTSQHQLFLLPGTETSVADRRRMFEMAASRSLSSSSQAPQCLQGSQAPQGLQGS
QASLAVSRPELRQLQQDALADYMERKRSWRTDRDRDRSEGGRAHRDRPHSAYLQPFTDTR
SVSSTSTTSLASLQEPLGQDSSLSGGGRLCSTLPPGLQGFYPGRVTAPRIQAKAPASMST
THPDTSGFHRLLEGELPRSSLGREEPAQDYEALQSQEFFLRGNGAFERAVPARNSGKSAS
AEDLLERSERPAPQHFRSRSSPSGERLNQDFMAGGDLRMYGIFSTEPRLFTNNDNNRSMD
NQHPDRPVSASQSMSQSQCADTHLLLTQSPFQSNTPVMRRDRLKNPDRQRALSASSLAAS
VGLPCPFSPPGTSPTISLDWQANERLSQANLDAIAFPTLLQTATLGTMSPEAQVHPEVRR
SPTEHLQQAMAQGQIQGSLDTSTSEEETLKDFPRQKEGPCPQASAVTPKTNPPLVLPKAS
PPPPPFKTSHRPHTLLSLRISESTLQETSPLQVAPHLAPPTVSLQDYDEVFLQEPAPPSP
IPPPLPIRETDITEYFPPPPPPLLPPSSLPDREEKEEENHHGPGLQHLNSCEFPFLPSPC
RQTVPPSIPLSVSPRPSLTPEPQPETPTTLSSSFPEPQQGPSGEESLGQEYHLPARRERS
AGELRVEALARQLVSRGDKSLTPMLDSWAEGGRTMDLMEEIFPVGGGRLLWQRRRTSTCL
EDRSQDGVCSIGPNLLQRTEGGGGAGGGRGGGEVDTDLDEDETDFNQKKVELLQALTLSI
TSLREEKEVLAEEQKRFRALGGQMESLVQEHCKPNEREKYKMLIGDMDKIVNLLLSLCGR
LARVHNALSALDREEETEDSQEEKESLQQKRRQLCSQHEDARELKENLDRRERVVLDILG
GYLTGPQLRDYQHFVCMKPALLIRQRHLDELLKQWDEQLSRLAESISPGDHQAQPRSPIP
GLNPSLGSNLRAPSPNLRAPSPNLRAPSPNLRAPSPNLRAPSPNLGPTQTVRSTTVTSL
NT seq
7200 nt
NT seq
+upstream
nt +downstream
nt
atggatagcagtctcccaagctacagcacagtcatacaccgaggaaagacgctgcttctg
gaggctcggctcctgggtggggcaccctgggggtttcagctcaaaggaggtctggaacat
ggagaggagttaatcatctcaaaggttgagggaggtgggaaggcagatctgttggaacac
cctctgttgccaggggaccaggtggttgtcattaatgacgtggaactcagtggattcagg
caggaagccgtctcattggtcaaaggatcctacaagactctccgactcactatccgcagg
gagtgctgcccaggctcctgctgtagtgaccccaccctcaccccactgaccctgcccaac
ctcacccccctacccatcggccctccctcggaccaccacacccccctctcctccgttcac
ggaccccccagagaaaatcgaggaggatgttctggaggagttaaactacgcatcaaaaac
agacgcagcgagcctgtctccagacctcactcgtggcacgccaccaagctaggcgagggc
cagccagaccccagcatgatgcaaatatcccaggaccctccttggcatcacacctacccc
tccagtgcgtctactacagacctgtcgggctacgacccaggttacctgaggaagagtcca
gatcagtacagttctagaggaagtatggagagccttggggagcaccacggccacccagcc
tacagctcttcctgccaccagctgtctgcctccaagtcctccaacagcatggaccacctt
cacagcaagagagactcagcctactcctccttctccaccagctctagtatcccagagtac
cttgcggccgctccgacctttggtaaggagagatcgtactccatggagacagttccgcag
aggggcgggattagtggagggggtggggccggggcggagggaatgcagcaagctgacatc
cgatatgtccgtacggtctacgacccccagcagggcggtgctcaggagcacgaggttagc
tccgcctctgctgcgttgctacgcagccacgagactggcagggcggggtcttgtagtgtg
ggcggggccgcctgttaccgcgccaccagtagcagtagtaacagcagtggcggaagcagc
ggtggtggtaaccatggtaataaccccaaccgtcacagtgttgggcccatttggggtcag
agcgccagccgcagttcctatgagagcctgaagggggcgccggctcctcccatgcggagc
gacagctacgcggctatcaggaaccatgagagaccaaactcgtggtccagcctggatcag
gctcgctccctcagggctctccacaaggggtccacctcctcctggtaccactcctctggc
tccgtggcctccggctcggggaagggctccttcggggcagagggccagctccacaccgtc
atagagaagagtcctgagagcagccctaccaccaagcccaaacagggtgtgggtcagggc
ttcccgccgccccccgagccccagcaaacatccacccagtctggctgcctcatgctgccc
cagggcatctaccctgtacccccaccggagcctcactatgcccagatgcccaccagcagc
cccaaccccagcagcatgtacccagccctggccagggagagcagtctgagcagacagaga
gagctccaggggttaaggctgggggtcagtgtggatacagggatggcggtagtggttgag
aatggataccaaagaaacccctctatatcctcctatgtcacttcctctggccagcctcag
catcctgactttgctcagcctccacccaaacagccagctcatccaacccaacccacagac
agagtggggggaaagtcagggtacgaggagacccaaactaaactgggtctctacaggtct
catctgaagggagagggacagaccgtatcccaaaggcagagccagaggagccaaggacag
ggacagggtcagagccaggatcagggacagggtcagagccagggacaggatcagagccag
ggacaggatcagagccaaggccagggacagggtcagggtcagaaccagggtcaaggacag
ggtcagagccagggacagggtcagatccaaggccagggacagggtcagagccaaagtcag
ggtcagagccaggatcagggtcagagccaaggccagggtcagagccaaggccagggactg
ggtcagagtcaaggccagggtcaggcgtccagaccctcctcagtccagtctataggccag
tctataggccagtctataggccaggagagaagggacccatacacgccagtccaaccgcgg
ggagagaggctacccaggtactcccagggctcagagagctgccctgagcaccaccgacag
ggccaggtcagggaggaagggcaggtcagacacacagagcccaggccccacgctactcac
cctgtggcaggcaccaccatgcccagtaagatcgcacagggacatgttccccaggggagc
aacagcagtagtaccccagcacaagtgtctgaccagcgggtagagcagagggcccagggg
cctgagcagcaggtagagcagagggcccaggggcctgaccagcaggtagagcagagggcc
caggggcctgaccaacaggtagagcagagggcccaggggcctttccagcaggtagaccag
agggcccaggtgtctgaccagcgggtagagcagagggcccaggggccagaccttcaggtc
aatgaccatagatccaggtcccccctctggtactacagcgatccaattcccccccaaccg
cagagggaccagaggggaccagaacaccccctgacccagctgcagaacgtcctagcagat
gtccagtgttgtgatagtccagagagctccgccaacagccagagtagtcaccagaggagc
ctctctgttctggagaaagtaaaccgcttcgagggccgcgagcagagccataggcagggg
aagcagaggagtaaaagcaccagcgccaaccacaccaacccgaggccctgctcctcccgt
ccaacccagccccagtctcagccccagtctcagccccagtctcagccccagtctcagccc
cagtctcagccccagtctcagccccagtctcagccccagtgtcagccccagtctcagccc
cagtctcagccccagtctcagccccagcaccatgagagggctggtatggatgacctgcgt
agcacgctggagagaactagcatccccagcatcacctgcagaacactgagctcctcctct
agctcacatcatgggaaaacaacggtggcccacgagggtcatcattacgtagagcagcag
aggccagggagttgtgaccagacccagagctccaggtacccccatcaccaccaccctaat
ccccaggaccctcgccctggctcggccctgcagaggagcaggagcaccttccaactgggg
agccaggagggccacaacagagacagggatggggacagagagttccattggagggatgac
ctgcaggacctactggggaccatccaggacacgtcctttaaccgggcctacagaaacagt
atcaaggacgcccagtccaaggtgctcagatccacctccttcagacgcagggatctggga
atcagcgtcaacaaccactcccctcccatccccgccaagcacttatctctggagaggaag
ggacctaagaccagccccaaaccctccattgtctccactactgtccaagcctccaaccga
gcccttgccctagctacctcacctcacacccctaaagagaggcttacggtcactgtctca
gacccagtcccaatcccagccccagccacctttctctcgcctcacacccctaaagagagg
cttacggtcactgtctcagacccagtcccaatcccagccccagccacctttctctcgcct
cacacccccaaagagaggcacgttgtcaccccagagcccgataggttcggtcccccagag
ctcctcagcgtcctggccatgggcccaccagtcccggcccgtatcggtgggcgtaagcga
ctcaccatggagaagaagaagaggtcctactccgagcctgagaacatgcatgaggtgggg
ttggagtctgacccaaggaggactagccagcaccagctgttccttttaccaggtacagag
accagcgtggcggaccgcagaaggatgtttgagatggctgccagtcgcagcctgagctcc
agctcccaggctccccagtgtctccagggctcccaggctccccagggcctccagggctcc
caggctagtctagccgtgtcccggccggagctccggcagctgcagcaggacgccctggcc
gactacatggagaggaagagaagctggaggacagacagggatagggacaggtcagaggga
gggcgcgcccaccgtgaccgccctcacagcgcctacctgcagccctttacagacacccgg
agtgtttcttcaacctccaccaccagcctagcctctcttcaggagcctcttggtcaagac
agcagtctttctggtgggggaaggctctgctccaccctgcctcctggcctccagggcttc
tatccaggcagggtcactgcaccacgcatccaggccaaggccccagcctcaatgtccacc
acccacccagacacctcgggattccacaggctactggagggagagctgcccagatccagc
cttggtagagaagaaccagcccaggactatgaggcactccaaagccaggagtttttcctg
cgaggcaatggagcctttgagagggcagttccagcccggaactctggcaagtcagcctct
gcggaggacctgctggagcgctctgagaggcctgcaccccagcacttcagatctcgctcc
tcgccctctggcgagaggctaaatcaggacttcatggcaggaggagatctgaggatgtat
gggatattctctaccgagcccaggcttttcacaaacaacgacaacaacaggtccatggac
aaccagcatcctgacagaccggtctctgcctcccagtccatgtcccagtcccagtgtgca
gatacccacttactactgacccaaagcccgttccaaagcaacacccctgtgatgaggaga
gatagactgaagaaccccgaccgccagcgggcccttagtgcctccagcttggctgcctct
gtaggtctcccctgccccttctcccccccaggcaccagccctactatcagcttggactgg
caggccaatgagaggttgagccaggccaacctggacgccatagccttcccaaccctgctg
cagaccgccacactcgggaccatgtccccagaggcccaggttcacccagaggtcagaaga
agccccacagaacatctacagcaggccatggcccagggccagatccagggctccttagac
accagcacctcagaggaggagaccctgaaagacttccccagacagaaagaggggccttgc
cctcaagcttcagccgttacaccaaagaccaacccacccctcgtcctacccaaagcctcc
ccaccaccacccccatttaaaacctctcacagaccacacaccctgctctccctccgcatc
tcagagtccactctgcaagagacctcacccctacaagtagctccacacctagcccctccc
acagtctcactacaggactatgacgaggtattcctccaggaaccggcccctccctcccct
attcctcccccgctgccaatcagggagacggacatcacagagtacttccctccgccgcct
ccccctctcctgcccccctcctcactcccagacagagaggagaaggaggaggagaatcat
catggacctgggctacagcacctcaacagctgtgagttcccatttctcccctccccctgc
cgtcagacagtccccccctctatccccctgtctgtctctccgaggccaagccttacccct
gagccccagcctgagacccccaccaccctcagcagcagtttcccagagccccagcagggg
cctagcggtgaggaaagcctggggcaagagtaccatctcccggccaggagggagaggtct
gctggggagctgagggtggaggccctggccagacagctggtgtcccggggggataagagc
ctgaccccgatgctggacagctgggcagagggcggacggaccatggacctaatggaggag
atcttccccgtggggggagggaggttgctgtggcaacgccgcaggaccagcacctgtctg
gaggacagaagtcaagatggtgtctgttctataggacccaatctgctgcagagaacagag
ggaggaggaggagcaggaggaggaagaggaggaggcgaggtggacacagatctggatgag
gatgagacagacttcaatcagaagaaggtggagctactccaggccctgactctgagcatt
acctccttgcgagaggagaaggaggttctggcggaggagcagaagaggttccgggcccta
gggggccaaatggagagcctggttcaggagcactgtaagcccaacgagagggagaagtac
aagatgctcatcggggacatggataagatagtcaaccttctgctgtctctgtgtggccgg
ctggcccgggtccataacgctctctctgccctggacagagaggaggagacagaggacagc
caagaggaaaaggagtccttacagcagaagcgcaggcagctgtgtagtcagcacgaggat
gccagggagctgaaggagaatctggaccggcgagagcgtgtggtactggacatcctgggt
gggtacctgactgggccgcagcttagagactaccagcatttcgtctgtatgaaaccagcc
ctgctgatccgccagagacacctggatgagctccttaagcagtgggatgaacagctcagc
aggctggctgagagtatctctccaggggatcatcaggcccagccccgctcacctatccct
gggttgaaccccagcctcggctctaaccttagagctcccagccctaaccttagagctccc
agccctaaccttagagctcccagccctaaccttagagctcccagccctaaccttagagct
cccagccctaaccttggtcctacccaaacagtccgctccaccactgtgacatcactgtga
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