KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112259580
Entry
112259580         CDS       T05605                                 
Name
(RefSeq) roquin-1-like
  KO
K15690  RING finger and CCCH-type zinc finger domain-containing protein
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:otw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:otw03000]
    112259580
   04121 Ubiquitin system [BR:otw04121]
    112259580
Transcription factors [BR:otw03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    112259580
Ubiquitin system [BR:otw04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    112259580
SSDB
Motif
Pfam: Roquin_1_2-like_ROQ ROQ_II zf-RING_5 zf-RING_UBOX zf-RING_2 zf-C3HC4_4 zf-C3HC4_3 zf-C3HC4 zf-CCCH zf-C3HC4_2 zf-CCCH_4 zf_CCCH_4 Prok-RING_4 FYVE NS3_helicase_C zf-RING_6 Baculo_IE-1 RING_XB3-XBAT31
Other DBs
NCBI-GeneID: 112259580
NCBI-ProteinID: XP_042184566
UniProt: A0AAZ3R0B2
LinkDB
Position
LG10:47580417..47622965
AA seq 1112 aa
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAIATD
IEQLPVNTALLQLVGGQVPKIQPVALITSPEDAQHYEEASQCVEELALYLKPLSNTRGVG
LSSTTLSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLVARLPGSSGLLSDDGLSLDVGVTRKPS
PLTNGSAVPPMPQLIARGTDLVTYDLLRKPKMDGGCNSSPESPPDSLDSGPKQGYPQPLH
AMGYSRGPGDHMSMPKQMPSGVVPRGPQMYPQQLPEMYYSDSRPPPSSSQYDPSQYPQGY
PYQQPPQYAPQRYIRNPPPPSEPAGLPYQDPYPDYGPPDRPYPAPHSGPPFSYPPPSHYD
TRGRHGPYPGPPPPPQPYPSQRDDMVRMSPAPLEGPPYHQEQAARERYPPEGFYPPGAQP
QPLRSYVREPYGRSSQPSLDYLHHRRKELMAQLEERKVIAPSPTLPHTFPSDYPPEYGEE
SSKAFGKCREPDYAGQYSPWSCDTIGSYIGTKDSKPKDVMAPGAMEMMNVDGKGRRGEPS
MDAQVRRGTEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQATGPMQALGSTQGPNPKHM
AIAAEYSYENHGGWGGASYPSHQTVVSSQGHFSERLPMPTQDREQLKTELQQVNQQINQQ
SQIHQQSQIHGMELSQPGQNQGQQGGKWPGPAGCSSSTAPVSSEQLSMELHQVEREIGKR
TREMDMDSLVAHEVLYKTKTAENGQQDHKAQLEEIALALGEVSNGSSGLVQDGGVGGAML
SLTTRASSLNLCSEPGPGGSDLQKNGVVHSCS
NT seq 3339 nt   +upstreamnt  +downstreamnt
atgcccgtgcaagccccacaatggacagagttcctgctgtgtcccatttgcactcagacg
ttcgaggagacggtgcggcggcccatttcgctgggctgtggccacacagtctgcaagatg
tgcctaaacaagctgcaccgcaaggcctgccccttcgaccagacggccatcgccactgac
atcgagcagctgcccgtcaacacagccctgctgcagctggtggggggacaggttcccaag
atccagccggtggcccttatcaccagcccagaagacgcgcagcactatgaggaggccagt
cagtgtgtggaggagctggccctctacctcaaacccctcagcaacaccagaggggtgggt
ctgagcagcacgaccctgagtatgctgagtcgacccatgcagaggaagctggtgaccctg
gtccactgtcagctggtggaggaggagggccgggtgcgggccatgagggcagcaaggtct
ctgggggagcgcacagtcacagagctcatcctgcagcaccaaaacccccagcaattgtcg
tccaatttgtgggccgccgtccgggccaggggctgccagttcttgggtccagccatgcag
gaggaggctctgaagctggtgctgctagctctggaggacggctcggccctgtccaggaag
gtcctggtgctgttcgtggtccagcggctggagccacgcttcccccaggcctccaaaacc
agcataggccacgtggtgcagctcctttacagggcctcctgctttaaggtgaccaagcgg
gacgaggactcgtcgctgatgcagctgaaggaggagttccggacgtatgaggcactgagg
cgcgaacacgactcccagattgtccagatcgctatggagggcggcctccgcatcgcccct
gaccagtggtcctccctgctctacggggaccagtctcacaagtcccacatgcagtccatc
atcgacaagttgcagacgccggcttcgtttgcccagagcgtccaggagttgaccatcgcc
ctgcagaggacgggcgaccccgccaaccttaaccgcctccgaccacacctggagctcctg
gccaacatcgacccgagccccgacgccccccctcccacgtgggagcagctggagaaaggt
ctggtggcggtgaagactgtagtccacggcctggtagatttcatccagaaccacagcaaa
aagggagccgacccacaacagcccccccagcacagcaagtacaagacttacatgtgtcgg
gacatgaagcagaagggaggctgtcctcgaggagccagctgtaccttcgcccactctcag
gaggagctggagaagtaccgtaaaatgaacaagcgtttggtagctcgcctccctggctca
tctggcctgctgtcggacgatggactctctctggatgtgggggtgacccggaaaccctcg
cccctcaccaacggctcagccgtaccccccatgccccagctcatcgcccgtggcaccgac
cttgtgacctacgacctgttgcgcaagcccaagatggacggcgggtgcaacagctccccg
gaatcgccccctgactctctggactcggggcccaaacaagggtacccccagccactccat
gccatgggctactccagggggccaggagaccacatgtccatgcccaagcagatgcccagt
ggcgtggtgccccgggggcctcagatgtacccgcagcagctacctgagatgtactactct
gactctcgccccccgccctcctcctcgcagtacgacccctcgcagtatccccaaggttac
ccctaccagcagcccccccagtacgccccccagcgctacatccgcaacccccctcccccc
agtgagcccgccggactcccctaccaggacccctaccctgactacggcccacccgatcgc
ccttacccggccccccactcgggccctcccttttcctaccctcccccatcccactatgac
acccggggccgtcacggcccttaccccggcccccctcctccgccccagccctacccctcg
cagagggacgacatggtccggatgagccccgcacccctggaagggcccccttaccaccag
gagcaggctgccagggagaggtaccccccagaaggattctacccaccaggggcccagccc
caacccttgaggtcctatgtcagagagccgtacgggcgctcctcccagcccagcctagac
tacttgcaccaccgccgtaaggagctgatggcccagctggaggagaggaaggtcatcgct
ccctcgcccaccctgccccacaccttccccagcgactaccccccagagtatggggaggag
agctccaaagcctttgggaagtgcagggagcccgactacgcgggccagtactctccctgg
tcctgtgacaccatcggctcctacatcggcaccaaggactcaaagcccaaagatgtcatg
gcgcccggggccatggagatgatgaatgtggacggtaaaggtaggcggggggagccctcc
atggatgcccaggtcaggcgggggacagaggtgaaggacgacgaccccatcatccctttc
ggcccccagcccactgtgtcgcgcttcggggccatctcacgcacctctaagacaggctac
caggcgacaggccccatgcaggccttgggctccacccagggacccaaccctaagcacatg
gccatagccgcggagtactcctatgagaaccacggaggctggggcggagcctcctacccc
tcccaccaaactgtcgtctcctctcagggacacttcagtgaaaggctgcctatgccaact
caggacagagagcagctgaagactgagctccaacaggtcaaccagcagatcaaccaacag
tctcagatccaccaacagtctcagatccacggcatggagctctcccagccaggtcagaac
cagggccagcagggggggaagtggcctggtccagcggggtgttccagcagcactgcccca
gtgtccagcgaacagctcagcatggagctccaccaggtggagagggagatcggcaagagg
acccgcgagatggacatggacagcctggtggctcatgaggtcctgtacaagacgaagact
gcagagaatggccagcaggaccacaaggcccagctggaggagattgctctggccctgggt
gaggtgtcgaatggctccagcggtctagttcaggatggcggtgtgggcggagccatgctg
tcactgaccactagggcgtcatcgcttaacctgtgttctgaaccaggacccgggggctct
gatctgcagaagaacggtgtggtccattcctgctcctag

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