Oncorhynchus tshawytscha (Chinook salmon): 112259581
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Entry
112259581 CDS
T05605
Symbol
myripa
Name
(RefSeq) rab effector MyRIP isoform X1
KO
K22237
Rab effector MyRIP
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112259581 (myripa)
Membrane trafficking [BR:
otw04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
112259581 (myripa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rab_eff_C
FYVE_2
FYVE_CARP1-2
Motif
Other DBs
NCBI-GeneID:
112259581
NCBI-ProteinID:
XP_042184568
LinkDB
All DBs
Position
LG10:47717755..47769535
Genome browser
AA seq
1562 aa
AA seq
DB search
MTIHVGKTAQTDLGPGYKKPTYPRKPHCVTVHCSLFQQELALLFWDIVTGCGVSWLLVCI
YFTISCICPELSGDNRLGQGVGLTVVPESAMRRKLDMSGLTDDEAEHVLQVVQRDMKLRK
KEDERLSELKQELDEEGSRCSLLSRQHRFNERCCIRCCSPFTFLVNPKRPCLDCKYNVCK
TCRSYSKKDKAWVCSACQKGRLLKTQSLEWYYNNVKCRFKRFGSAKVLKTLYRKHLAEHG
TLGELTEGSTYEESIGNEGSVCSENAFYRQSEEHSMAETLTVALRVAEEAIDEAIAKAEG
HTDSQDKQSEARYLRDHREELIEELATTIVQKIIRRRKNLAEMKPDYDLDWLPDNQSGDL
PLVSSSPSCKISRTTSARAKASIWRSHSAFSLLDDNVMMQCSGVSQDSQHGLKKEGGAAG
LANWKSVDRLDNSSASSVLKSPDGNWIAQQSTQLSRPSLLTKRKSLVFSVLEKESGVISA
YDEMGSDDAEGGEGAWGAALLEIRRKMTNANNNQGSEAPDSQASDDQQHSLPSPLLDHHA
STDTLNSESEVGEDQIRGQGPKPQKPLLAILKRKVPVEHRCTPSSRRSSRPGIFDVNFNP
EGMEAESSGADELEEGGKVRRTRRRKRTKKDHGEGRGEEYSSMLLDALAKKLSVKKTSQS
GAVTPDTLTLDGGLTSRSLTPEPRGPEGEAPGCGAPKGQGGGTMGVAINLEQELTIRLRE
LASQVGLAHLSSSEDELHRSGEDEGGREGRREGTQEEERLWHIEIEMEGGRAGEGEEEKR
IKEREGDGGGELKSTLIKLASQVRGTEFSSTEDELDRVGRVEREWERERVEERTKKRERE
GREEHTVKLRMLASQVTHFSSTEEELDRVGVSDGEMEEQRQGEREGEKEELTYERCRLAR
QVNDAQLSSTEDELDRVDLYDEEMEKGREERGGEGGGEREEIDAEALWEMEGDKEELTSK
LRDLASLVSASQFSSTEDELDRVGRNEGEREEGRKGDRMKLSNRVADWVRERCGEKEGKW
HGERWGEMEGERRRVQVERVREKPWYLEGMEVEGRRMNKERRDSIGELDVRLFDFEDESE
KEGELQSKEMDTKVEEEGVMKVQRMMERMFEGGKERKRAGEAERKVEGGMGEAEVGERER
ETTESVHTVEGEVMFDKIISNLEHTLGGMEVEMDGEMVANPKREGREEDKNQTKVGESKF
KKEEEKDEYLMNEMLMLEQLSDRFGTLDKTGVKSQEKAGGKERERDSSDKTVECIVERGE
KEAREKDEQAETETHKSIQPQHLDERKEQVSDQTKSETSRDLEEESKGVERGGYEGGEVE
EQTSEKEMDDFGEREGENFEKNTDEKETESNRTKDPEESAPCVQEEILSSEEIQNRYSAM
SLRSITTEVLTVLNATEDLLQGVEGGDYACSPPYTASLPLNTDTKRLGEQLSRLEENVYV
AAGTAYGLEAELDDLEECARAIGDSTSDLELSYLEEQVASAAAQVHQSDLQTQTFALEKR
RKRGILPLVLPRVSDIAARITALKNAGLNVVPQNRFTKPKKQPKPQMLVSSRQRGGDYLL
HS
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atgaccattcacgttggcaagacagcacaaacagatctgggaccaggctacaaaaagcct
acttaccccaggaaacctcactgtgtgactgttcactgttcactgttccagcaggagctt
gctcttcttttctgggatatagtcacaggctgtggagtttcctggttattagtttgtatt
tatttcaccatctcttgcatctgtcctgagctcagtggagacaacagattggggcagggg
gttggattgacagtggtacctgagtcagccatgaggcggaagctggacatgtcgggactg
acggacgatgaggcagagcacgttctacaagtggtgcagcgggacatgaagctccggaag
aaagaggacgagcgcctcagtgagctgaagcaggagctggatgaggagggaagtcgctgc
tccctcctctcccggcagcatcgcttcaacgagcgctgctgcatccgctgctgctctcca
ttcaccttcctggtcaaccccaagcgcccgtgtctggactgcaagtacaacgtctgcaag
acctgccgctcctacagcaagaaggacaaagcctgggtctgctctgcgtgtcagaaaggg
aggcttctgaagacccagtccctggagtggtactacaacaatgtaaagtgtcgcttcaag
aggtttggtagtgccaaggtgctgaagacactatacagaaaacacctggcggagcatggg
acgctgggagaactcacagagggtagcacgtatgaggagagcatcggcaacgagggcagc
gtctgtagtgaaaacgccttctacagacagagtgaagagcacagcatggcagagaccctg
acggtggcactgagggtggcagaggaggccatcgacgaggccatcgccaaggcagaagga
cacaccgacagtcaggacaagcagagcgaggcaaggtatctgcgagaccacagagaagag
ctgattgaggaactggccacaaccattgtgcagaaaatcatccggcggaggaagaatcta
gctgagatgaagccagactatgacctggactggctccccgacaaccagagtggtgacctg
cccttggtttcaagctcccccagctgcaagatctcccgcaccacatcagcccgcgccaag
gcctctatatggcggtctcactctgccttctcgctgctggatgacaacgttatgatgcag
tgctctggggtttcccaggactctcagcatgggctgaaaaaggagggaggagcggcagga
ttggccaactggaagagtgttgaccgcctggacaactccagtgcgtcctcagtgctgaag
agcccagacgggaactggatcgcccagcagagcacacagctgtctcggcccagcctgctg
accaagaggaagtcactggtattcagcgttttggagaaggagtctggtgtgatctccgcc
tacgatgagatgggctcagacgacgccgaggggggagagggggcctggggcgccgccctg
ctggagatacgcaggaaaatgacaaacgccaacaacaaccaggggtcagaggcaccagat
tctcaggcctctgacgaccagcagcacagcctcccctcacccttgctggaccaccacgcc
agcacggacaccctcaactctgaatctgaggtaggagaagatcagattcgaggtcaaggg
ccgaagccccagaagcctctgctcgccatcctgaagagaaaggtgcctgtggagcaccgc
tgcaccccctcttcacgtcggtcatcccgcccaggcatcttcgacgtgaactttaaccct
gaggggatggaggctgagagcagcggggctgatgagctggaggaggggggcaaagtcagg
aggacgcgaaggaggaagaggactaaaaaggatcatggggagggaagaggagaggagtat
agcagcatgctactggatgccctggccaagaaactaagtgtgaaaaagaccagccaatct
ggcgcagtcaccccagacactctgactttggatggaggcttgacctccaggtcgctgacc
cctgaaccccggggtcctgagggggaggcccccggctgcggggcccctaaaggccaggga
ggagggaccatgggagtggccatcaatcttgagcaggaactgaccatcagactgagagag
ctggccagccaagtcggcctcgcacacctctcatcatctgaggatgaactgcacagatcg
ggagaggacgagggaggaagggagggaaggagagaaggaactcaggaggaggagcggtta
tggcatatagaaatcgagatggaaggagggagagcgggagagggtgaggaggagaagagg
atcaaagaaagggagggagatggaggaggagagctgaagtcaacactaatcaagctagct
agtcaggtcagaggcacagaattctcatccactgaagatgagttggacagagtgggtaga
gttgagcgagaatgggagagagagcgggtggaggagaggacaaaaaagagggagagagaa
ggaagagaggagcacaccgtaaagttgcgtatgctggctagccaagtcacacatttctca
tcaacagaggaagagcttgaccgagtgggtgtcagcgatggagagatggaggagcagaga
caaggagagagggagggagagaaggaagagctgacatacgaacggtgcagactggctaga
caggtcaatgacgcgcagttgtcatcaacagaggacgagctggatagagtggatctctat
gatgaagagatggagaaaggtagggaggagagaggaggagaagggggtggagagcgggag
gagattgacgctgaggcactgtgggagatggagggagataaagaggaactgacctccaag
ttgagagatctggccagtctcgttagcgcgtcccaattctcctctacggaagatgaactg
gatagagtgggaaggaacgagggagagagggaagaggggagaaaaggagaccgaatgaag
ttgtccaatagagtggcagactgggtcagagagagatgtggagagaaggagggaaagtgg
catggagagagatggggagagatggagggagagaggaggagggtacaggtggagagggtg
agagagaagccctggtacctggaggggatggaggtggaagggaggaggatgaacaaggag
aggagagatagcatcggagaactagacgtcagactctttgactttgaggatgaaagtgag
aaagagggagagctgcaaagcaaagagatggacacaaaggtagaggaagagggagtcatg
aaggtacagaggatgatggagaggatgtttgaaggaggaaaggaaagaaagagggcaggg
gaagcagagagaaaggtggaaggagggatgggagaggcagaagtgggagaaagagagcga
gaaacaacagaaagtgtgcacactgtggagggagaggtgatgtttgacaaaataatcagc
aacctagagcacacactgggtgggatggaggtagagatggatggagagatggtggcgaac
cccaaaagagaagggagagaagaggataagaaccaaacaaaggttggagaaagcaagttt
aagaaagaagaagagaaagatgaatatctaatgaatgagatgctaatgttagaacagctg
tcagacaggtttggcactttagataagactggagtcaaatctcaagagaaggctggaggg
aaggaaagagaaagggacagttcggataagacagtagagtgtatcgtggagcgaggtgag
aaagaggctcgagagaaagatgagcaggctgaaacagagacccataaaagcatccaacca
cagcatttagatgagagaaaggaacaagtatcagaccagacaaagagcgagacatcccga
gacctggaagaagagagcaagggagtagaaagagggggatatgaaggaggggaggtagag
gagcaaacaagcgagaaggagatggatgattttggggaaagagaaggggagaattttgag
aagaatacagacgagaaagaaactgagagcaaccgaactaaggacccagaagagagcgcc
ccctgtgttcaggaggagatactgtcttcagaggagatccagaataggtactcggcgatg
tcactgcgcagtatcaccactgaggtgctgacggtgttgaatgcgacagaggacctactc
cagggggtggaagggggtgactacgcttgttctcctccctacaccgcttcactacccctc
aacactgacaccaagaggctgggtgaacagctcagcagactggaggagaatgtgtatgtg
gcggcgggcacggcgtacggcctggaggcggagctggacgacctggaggagtgtgcccgg
gccatcggcgattccacctctgacctggagctgtcctacctggaggagcaggtggcatca
gctgccgcccaggtgcatcagtctgacctccagacgcagacttttgctttggaaaaaagg
agaaagcgggggattttacctctggttttacctcgggtgtcggacattgcagccaggatc
acagctctgaagaatgcaggtctcaacgtggtcccacagaaccgcttcactaagcccaag
aaacagcctaagccacaaatgttggtctcgtcacggcagagaggaggcgactacctgctc
cactcttga
DBGET
integrated database retrieval system
