Oncorhynchus tshawytscha (Chinook salmon): 112259635
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Entry
112259635 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC1-like
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03020
RNA polymerase
otw04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
112259635
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
112259635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112259635
Enzymes [BR:
otw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
112259635
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
112259635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Motif
Other DBs
NCBI-GeneID:
112259635
NCBI-ProteinID:
XP_042169552
LinkDB
All DBs
Position
Unknown
AA seq
1396 aa
AA seq
DB search
MVKEQFRETDVAKKISHICFGMKSAEQMRQQAHIQVVSKNLYSQDTSHTPLPYGVLDHRM
GTSEKDRPCETCGKNLADCLGHYGYLDLEMPCFHVGYFKATIGILQMICKTCSHIMLTKE
EKLQFMDVLKRPGLAYLQKRGMKKKISDKCRKRTLCLNCSTLNGPVKKCGLLKILHEKYK
TTKKVVDTVVSDFLNSFDIAIEHNKEVEGLLNRAQENLSPLVVLNLFRRIPAEDIPLLLM
NPEAGKPADLILTRLLVPPLCIRPSVISDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMSG
AKTQMIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKR
VDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPEKVNKANLEMLRKLVRSGPEVHPGANF
IQQRHTQMKRFLKYGNREKMAQELRFGDVVERHMIDGDIVLFNRQPSLHKLSIMAHIAKV
KPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIA
AIQDFLTGAYLLTLKDTFFDRSKACQIVASILVGVDEKIKIALPHPAILKPMTLWTGKQI
FGLILKPSKACPVKANLRTKGKQYSGKGEDLCSNDSCEFLPMPLYLLMLFTSTYDNALNM
LNTKGVVILYHACFSFPVAQHLFPVCPTEHDCYKPYAANRGFSIGIGDVTPGQGLLKAKQ
DLLDGGYAKCDEYIEALKTGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKT
NSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFV
ADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSST
GDIIQFVYXGDGLDPAAMEGKDEPLEFNRVLDNIRSVHTCSEQPALSKNELVLTAESIMK
RSDFKCCRDSFLEEIKKFIKATSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPSQLEKF
LETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEII
NASKNISTPIISAHLDVDDDADFGRLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSL
ERIRLLRLEVNAETVRYSICMSKLRVKPGDIAVHGEAVVCVSPRENSKSSMYYVLQSLKD
NLPKVVVQGIPEVSRAVIHIDEQTGKNKYKLLVEGDNLRSVMATHGVNGNRTTSNNTYEV
EKTIGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILGITRFGLAKMKES
VLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADKDPTPPR
RPLLFDSPDFHIPLVT
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaagagcagtttagagagactgatgtggccaaaaaaataagccacatctgtttt
gggatgaagtcggctgaacagatgagacagcaggctcatatccaagtggtcagtaagaac
ctgtacagccaggacaccagccatactcctctaccatatggggtactggatcatcgcatg
ggcaccagtgagaaggatcgtccttgtgagacgtgtgggaagaacctggctgactgtctg
ggacactatgggtatctggacctggagatgccctgttttcatgtgggctatttcaaagcc
accattggaatcctacagatgatctgtaagacgtgttctcacatcatgctgaccaaagag
gagaaactacagttcatggatgtgttgaagaggccaggcctagcgtacctccagaaacga
ggaatgaagaagaagatatccgacaaatgccgcaaaaggacattgtgtctcaattgctcc
acgttaaatggaccagtgaagaagtgtggcttgctgaagatcctccacgagaaatacaag
acaaccaagaaagtggtggacactgtagtatcagactttctcaactcattcgatatcgca
atagaacacaacaaggaagtggagggcttgcttaacagggctcaggagaacctgagtcct
ctagtggtgctgaacctcttcaggaggataccagcggaggacattcccctgctcctgatg
aaccctgaggcaggtaagcctgcagacctcatcctcacccgcctgctggtacccccgctc
tgcatccgcccctctgtcatctcagacctcaagtcaggtactaatgaggatgacctcacc
atgaagctcacagagatcatcttcctcaatgacgtcatcaagaagcaccgtatgtcaggg
gccaagacccagatgatcatggaggactgggacttcctccagctgcaatgtgctctctac
atcaacagtgagctctctggcatccccctcaacatggcccctaagaagtggaccagaggc
ttcgttcagagactcaagggcaaacaagggcgattccgtggaaacctctccgggaagaga
gtggatttctctgggagaacggtcatctctccggaccccaacctgcggattgatgaggtg
gctgtccctgtgcacgtagccaaaatcctgacctacccagagaaggtgaacaaggccaac
ttggagatgcttaggaagctggtgcggagcggtccagaggtccaccctggagccaacttc
atccagcaacgacacacgcagatgaagaggtttctgaagtacgggaaccgagagaagatg
gcccaggagctgaggtttggagacgtggtggagagacacatgatcgatggagacatcgtc
ctcttcaaccgacagccctctctacacaaactcagcatcatggctcatattgccaaagtg
aagcctcacagaacgttccggtttaacgagtgtgtgtgcacgccgtacaacgctgacttt
gacggggatgagatgaaccttcaccttccccagacagaggaggccaaggctgaagccctg
gtgctgatggggaccaaagccaacctggtgacccccaggaacggagagcctctgattgct
gctattcaagactttctgacaggagcctacctgttgaccctgaaggacacattcttcgat
aggtctaaagcctgccagatagtggcctctatcctggtgggggtggatgagaagatcaag
atagctctcccacaccctgccatactcaagcccatgaccctgtggacagggaagcagatc
tttggtctgatcctgaagcccagtaaggcctgtccagtcaaggccaacctgaggaccaag
gggaaacagtacagtgggaaaggagaggacctctgcagcaacgactcctgtgagttcctc
cccatgcctctctatttactgatgctgtttacttccacctatgataatgctttgaacatg
ctcaatactaaaggcgttgtcatactttaccatgcttgttttagttttcccgttgcacag
catttgtttccagtgtgccctactgaacatgactgttataaaccctatgcagccaaccgg
ggtttctccatcggtattggtgacgtgaccccaggccagggtctgctgaaggccaaacag
gacctgctggatggaggctatgccaagtgtgacgagtacatcgaggccctgaagacgggc
aaactgcagcaacagccaggctgcacggctgaggagacactggaggccctcatcctgaag
gagttgtctgttatcagagaccatgccggcagcgcctgcctcagagaactggacaagacc
aatagtcctctgattatggctctgtgtggctccaaaggatccttcatcaacatctcccag
atgatcgcctgcgtgggccagcaggctataagcggctctcgagtgcccgacggctttgag
aaccgctcgctgcctcactttgagaagcactctaaacttcctgcagctaaagggtttgta
gctgacagcttttattcaggcctgacgccgacggagttctttttccacactatggctggt
cgagagggcttggtggacaccgctgttaaaacagcagagaccggatacatgcagaggcgt
ctggtcaagtcgttggaggacctgtgttcccagtatgatctgacggtacggagctccact
ggtgacatcatccagtttgtctacnggggggacggcctggacccggccgccatggagggg
aaagatgagccgttggagttcaacagagttctggacaacatccggtctgtccatacgtgt
tctgagcagccagcccttagtaagaatgagttggtcctgacagcagagtccatcatgaag
aggagtgacttcaagtgctgccgagacagcttcctcgaggagatcaaaaagttcatcaag
gctacatccgagaaaatcaagaagaccagggacaaatacggcatcaacgacaatggcacc
actgagcccagagttctgtatcagttggaccgcatcactcccagccagctagagaagttt
ctggagacctgcagggacaagtacatgagagctcagatggagccgggctcagcagtagga
gccctgtgtgcccagagcattggggagcctggcacccagatgaccctgaaaaccttccac
tttgctggggtagcctccatgaacatcaccctgggggtcccacgcatcaaggagatcatc
aacgcctccaagaacatcagcacacctataatcagcgctcacttggatgtggacgacgac
gcagacttcggccgtctggtgaaagggaggattgaaaagacccttctgggagagatttca
gagtacattgaagaggtgtttctgccagacgactgtttcattctggtcaagctgtcactg
gagaggatcagactgctacggctagaggtgaatgcagagacagtccgctactctatctgc
atgtctaagctgagagtgaagcctggagacatagctgtacacggggaggcagtggtctgt
gtatctcccagggaaaacagcaagagctccatgtactacgtcctccagtctctaaaggat
aacctgcccaaggtggtggtacagggtatccctgaggtctccagagctgtcattcacatc
gacgagcagaccggcaagaacaagtacaagctgctggttgagggagacaacctacgcagt
gtcatggcaacccacggtgtcaacggcaacaggaccacctcaaacaacacctatgaggtt
gagaagacgattggtatcgaggctgctaggtccaccatcatcaatgagatccagtacacc
atggtgaaccacggcatgagcatcgacaggcgacacgtcatgctcctggctgacctcatg
tcctataagggtgagatcctgggtatcacccggtttggcctggctaagatgaaggagagc
gtgttgatgctggcgtcctttgagaaaactgccgaccatctctttgacgctgcgtacttt
ggtcagaaggactcggtctgtggtgtatctgaatgcatcatcatgggaatccccatgaac
atcggtactggactgttcaagctcttacacaaggctgataaggaccccacgccacccagg
agacccctgctcttcgacagtcccgacttccacatccccttggttacatag
DBGET
integrated database retrieval system
