Oncorhynchus tshawytscha (Chinook salmon): 112259730
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Entry
112259730 CDS
T05605
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 1 isoform X1
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112259730
Membrane trafficking [BR:
otw04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
112259730
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_1
TPR_2
TPR_8
TPR_7
SH3_1
TPR_10
TPR_14
SH3_9
Motif
Other DBs
NCBI-GeneID:
112259730
NCBI-ProteinID:
XP_024290116
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All DBs
Position
LG10:complement(14230081..14247916)
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AA seq
1374 aa
AA seq
DB search
MKKLIMSTAEQEVEPVAVVNRMDTSTRHYRRELSAEDHNHDPVKKGTRSRKMERSSSRGA
GTSEDCFPTALPMLLAMVEGPDKLPADEGSQEVLRGKLRLLEADSIEVNALFMELSARLV
SINCEENAIFVTFKTFEEIWRFTTYYTMGFLGQCMENLLLDQDFWLSSLDQEYFAIEISI
QEETLNLMYKGILMQEGSLFASCSSTQMFDSATSGRDLYLEQGDIALFEPPFLGSGWTVL
SLGDGARGTKPKPALEPVIPFHQWFLKSCAENILVGSGKPACDFPCQFATGSCVATVEYD
AGGPDELSLEQGDRIIIVGLLVSCFEWFTGRLERTGEVGLVMTTLVRPADSLCEASDIFL
EKEERLFFNLKEDQIKEETIALLKKINQNDVGHVYKLDLIAHPDSPNEPTQSRDGSQGNM
DAHQQAELRRKIEEILLKGKMKSKVPHATVTTNGTLEDQSETSKTTLPSGPHFTIQPVEE
GTTTNQEKFLPLLSFLGGSNYKPEFGALYGQTPERLLATFTGHSDDVDKLVAYLSVARET
ARKKRLHWSQSRLCFLLGKLCAGRSKFSQARVYFEEALSVPRDIFTDMLMLASIYANLAV
IYLMQKNTEKYLALSERIAALLMGIPYCVSTVEKDSEVLKFILKKAVLSHNKMAEARACF
LLAKLHWRRGEAADTIPFLERLLVLLAEPPGVRSVRPSHGYLSLAGLYSQLSLPHLCVSS
ARRATMHPSARLADCLNGMGLVLENTDRLYGIRKQDVAIPAQVAPYLSRSLSFTGRLDGV
GGTGDHTLSQALTLCLSQLFQEHGMLGHAVRSMHTLIDHHCAPSSSSGTSSIPERNIALV
WLAWLHICNSQPEVSLDVLDSVLASMPEHCTTPQEGLVHNMRGVALRSMGDLRRAAESYQ
TAIDVCEECEDRANWAVAEANLGLLCLKAGAKRLAEQHLTEAVEMLSALEGQEHEVNFTT
VLLELGQYYVNQRHLDRGKIYYEWALLMAIKSNHSDSQLSVTRRLCHLYRAVCPDEAQCI
IYNEHQLALLVTRGDRRQEGEVLETISQLYLSLGTERARRSALDYTKRSLGIFIDLGRRE
KEAYAWLQAGKIYHLLGQTELVDLYLQVAQDVGVSTGDTHFILQLLEAGGDVFFNSSTER
EKAVCFYGDRALPIAVKTSSTEVRLRLSNKLVELLLQMKLYGEAVEYAQTALDISVKLGN
RLNERVAFHRLATLYHCLGQFELAEHYYLKALSLCPTPLEFDEETLYYVRVYRTLGDIIF
YDLKDPYDAAGYYHLALAAAMDIGNKKSQLQLCTRLATIYHNFLVDRELSLFFYQKARAF
ASDLNVRRINLSPDQIFSSMSQYKTNRVNIQEPRNKSPPNGHLGLKLVRRGERL
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagttaattatgtcaaccgcggaacaagaggtggaacccgtggcggtggttaac
cgtatggatactagcactcgccattaccggagagagctctcagcagaagaccacaaccat
gatccggtaaaaaaggggaccagaagtagaaaaatggagcgctccagctccagaggagca
ggcacatccgaagactgcttcccaacagcgctgcccatgctgttggccatggtggagggg
ccggacaagcttcctgcagacgaggggtcacaggaagtgctgagggggaaactccgcctc
ctggaagccgacagcatagaggtcaacgctctcttcatggaactatcagctcggcttgtt
tccatcaactgtgaagaaaacgccatatttgtcacattcaaaacatttgaagagatatgg
aggttcaccacgtattacacaatgggctttctgggtcagtgcatggagaacctgctgttg
gaccaggacttctggttgagttctctggaccaggagtactttgccatagagatctctatc
caagaggagactctcaacctcatgtacaaaggcatcctcatgcaagagggttccttgttc
gccagctgcagctccacccagatgttcgacagcgccacctctggtagagacctctacctg
gagcagggggacatcgccctgtttgagcccccgttcctgggctcggggtggaccgtactc
tccctgggggatggagcccgggggaccaaacccaaaccagccctggagcccgtcatcccc
ttccaccaatggttcctcaaatcatgtgcggagaacatcttagttggcagtggcaagcca
gcatgtgatttcccctgccagtttgccactggctcttgcgtggccactgttgagtatgac
gccggtgggccagacgagctaagcctggagcagggcgaccgcatcatcattgtgggcctg
ttggtgtcgtgcttcgagtggttcactggcagactggagagaacaggagaagtgggattg
gtgatgacaacactggtcagaccggccgatagcctttgtgaggcatctgacattttccta
gagaaagaagagaggttgtttttcaacctgaaagaagatcagattaaagaggagacaatc
gccttgctgaaaaaaataaaccagaatgatgttggacacgtctacaaacttgatctgatt
gctcacccggattctccaaatgaaccaactcaaagtagggatggttcccaaggcaacatg
gacgctcaccaacaagcagaactgaggagaaagattgaagagattctgctaaaagggaag
atgaaatcgaaggtgcctcatgcaactgtgacgacaaatggaactctggaggaccagagt
gagacctctaagactacattacccagcgggcctcacttcaccatccaaccagttgaggaa
ggcaccaccaccaaccaggagaaattccttcctcttctatccttcctgggtggcagcaac
tacaagccagagtttggcgccctctatggccaaactccggaacggctcctcgccactttc
actggccactcggacgacgttgacaaattagtggcgtatctaagtgttgccagggaaact
gccagaaagaaacgtctccattggtcccagagccgcctctgtttccttttggggaaactc
tgcgcaggacgatcaaaattttcccaggctcgcgtctacttcgaggaggcccttagcgtc
cctcgagacatcttcacggacatgctaatgctagctagcatctacgctaacctagcggtg
atctatctcatgcagaaaaatacagagaaatacttggctctgtcggagcggatcgctgcg
ctgctaatgggcatcccttactgcgtctcaacagtggagaaagactcagaagttctgaaa
tttatcctgaagaaggcggtgcttagtcacaataaaatggcagaagccagagcatgcttc
cttttggccaagctccactggaggcgaggtgaggcggcggacaccattcccttcctggag
aggcttctggttctcttggcggagccccctggtgtccggagcgtcaggcccagccatggc
tacctcagcctggcggggctgtacagccagctctccctccctcacctctgtgtcagctcg
gccaggagagccacgatgcatccgtctgctaggctagccgattgtctgaatggaatgggg
ctggttctggagaacacagacagactctatgggatccggaagcaggacgtcgccattccg
gctcaagtggctccatatctcagccggtcgctctccttcactgggcgattagatggagtc
ggtggcactggtgaccacactctaagccaggctctaacactctgcctatcccagctgttt
caggaacatgggatgctaggtcacgccgtacgctccatgcacactctcatagaccatcat
tgtgcgccgtcatcatcatcgggcacctctagcattcctgaacgaaacatcgcccttgtg
tggctagcatggctccacatctgtaacagccaaccagaggtttctctagatgtcctcgac
tcagtgctggcctccatgccagaacattgcactaccccacaggaaggactggtccacaac
atgaggggtgtagccttgcgaagcatgggggacctgaggagggcagcagagagctaccag
acggccattgatgtgtgtgaggagtgtgaggaccgggctaactgggcagtagcagaagct
aacctggggttattgtgtctgaaggctggggctaagaggttagcggagcagcatctaaca
gaagctgttgagatgttgtcagcgctggagggacaagaacatgaggtgaactttaccact
gtgctgttggagctgggacagtactatgtgaaccagagacacctggacagaggaaagatc
tactatgaatgggctctactcatggctatcaagtcaaaccactcagacagtcagttgagc
gtgacgcgacgcttgtgccacctttacagagcagtgtgtcctgatgaggcccagtgcatc
atctacaacgaacatcagctggccctgctggtgacccggggagacaggagacaggaggga
gaggtgttggagaccatcagccagctataccttagtctggggacagagagggctaggcgg
tctgctctggactacaccaagcgtagcctggggatcttcatagacctgggccggagggag
aaggaggcttacgcctggttacaggctgggaagatataccacctgctgggccagactgaa
ctggtggacctttatttacaggtggcccaagatgtgggggtgagtacgggagacacacac
ttcatcctacagctgctggaggcaggaggggacgtcttcttcaacagctcaacggagaga
gagaaggctgtctgcttctatggggaccgtgccctgcccatcgcggtgaaaaccagcagt
acagaggtcagactgagactgtctaacaagctggtggagctgctgctgcagatgaagctg
tatggagaggctgttgagtacgcccagaccgccctggacatcagtgttaaactgggaaac
cgtctgaacgagcgtgtggcgttccaccgcctggctactctgtaccactgtctgggtcag
tttgagctggctgaacactactacctgaaggccctctccctctgccccacgcccctggaa
tttgatgaggaaaccctgtactatgtcagggtgtatcggacgctgggggatattatattc
tatgacctgaaggacccgtatgacgccgcagggtactaccacctagcacttgctgcagcc
atggacatcggcaacaagaagtcccagctccagctctgcacccgattggctaccatctac
cacaacttcctagtcgatcgggaactgtccctcttcttctaccagaaagcacgagcgttc
gcctccgacctcaatgtacgacgcatcaacctctcgccagaccagatcttcagcagtatg
tcacagtacaagacaaacagggtgaacatccaggaaccaagaaataagtcaccgccaaac
ggccatcttggtttgaagttagtgagaagaggggagaggttatag
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