Oncorhynchus tshawytscha (Chinook salmon): 112259966
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Entry
112259966 CDS
T05605
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw02010
ABC transporters
otw04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
112259966
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
112259966
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
otw02000
]
112259966
Transporters [BR:
otw02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
112259966
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
DUF4162
AAA_23
MukB
Motif
Other DBs
NCBI-GeneID:
112259966
NCBI-ProteinID:
XP_024290448
UniProt:
A0A8C8D303
LinkDB
All DBs
Position
LG10:complement(22513742..22761601)
Genome browser
AA seq
2254 aa
AA seq
DB search
MGLLTQLGLLLWKNFTLRKRQKVRLVVELLWPLFLFFILVWVRSTTQPIYQGECHYPNKA
MPSAGVLPWLQGMMCNIDNPCVNHSTPGEAPGQVNNFNNSIIAGMLIELQSLLANRSVLT
KIQTLSDDVDQWVLILPTSNREKGQPIPLRSILNDNEMFTTYLRENLSMPSTVADGLITS
NIRLNEMMGISRQDDLRITLCSGTALDRYVEFTSAFDKEAFQKVSCSLTAQQLRQTREVF
LQNLDPRKMLTNLPSALDLAPSETFGLVRKTTEDALTVIDEMNKLQNSMLFKAADRLDFR
ADAFGSLNILLCGKVSNSNSTKTTMNFPAFGAMRNDTENKARSSNSSAFCKVLIDTLEGT
PGLRIVWRTFRPLIQGKILYTPDTPATRLMVKEANSTFNALAMLKELLDAWEDFEPRGWN
YFQNGPQASALRAFLDNPVFAAALNHGLEGTRWTEELLANFLYNGPPEDRPAGMPPNDWR
DMFNATRQILDLLKKFIGCLDLDKFEAVDSEGHLVARALELLENDTYWAGIVFEDLDPAA
SHPPPYVKYKIRLDIDEGESTNKIKERGWSPGARDSFNNLRYIWGGFAYLQDMMDHGIIR
VHTNKSQPLGVFAQQMPYPCYVDDVFLASIGTMLPMYLVLAFMYTVCMTIKGLVLEKELR
LKEVQRAVGVQNGAIWFAWFTENFVLLMVPCAFISVMVKYGKVLQYSDPSVIFVFLLVFC
VATIMECFFISVFFSKANLAAACGGLIYFVLYLPHLLCYAWRDVMGFQVKIAVSLLSCVA
FGYGCENFAKYEEQGIGIQWSNIAQNPEDGDRYSFIVSIIMMLVDSLIYWLLTWYIENVF
PGQYGIAKPWYFPLTASYWCGTSPAPNADPSQFKDPIEYTGYLEKPPLNMKAGVSIRNLV
KIYKTGKKLAVDGLTVDFFENHITSFLGHNGAGKTTTMSILTGLFAPTSGTALINGYDIR
TDMDTIRKHLGMCPQHNVLFNDLTVEEHIYFYSRLKGRSRDEVKTEIDQMIEDVGLPHKR
KEFAKNLSGGMQRKLSVAIAFVGGSNIVILDEPTAGVDPYARRGIWELLLKYKQGRTIIL
STHHMDEADILGDRIAIISHGKMCCYGSSLFLKKYFGSGYYLTLVKAGDGQMTNQCTGVE
QRQVKEETGESLRRTSLVEGIAQQNWSNSEPTDVSKVVCRHVPEAVFLESIGQEITYILP
YGGAKDGTFALLFKELDLKMADIGVTNYGISDTTLEEIFLKVAEDTGVDAEIPAINAALV
RDKTRSSRESKRQRQSLTKVGDTSDEMPGKSAEDEMKVKFTSRVEDVERVANVNGKGSSV
ITGWELIRRQFLALFIKRFHHARRSRKGLIAQVILPAVFVCLSLIFSVIVPPFAEYPNLE
LQPWMYGLPQTTFYSNDGPPNNTEVARVADSLVNNPGFGTRCMANNPIPNLPCVPNDSKW
FTPTVDPSISNIFVNGNWSMANPSPNCQCSTPQKTTMLPDCPPGAGGLPPPQRTQNTTDT
LQDMTGRNMTDFLLKTYKEAGRKRYGGISVGGVNSQVRMTEPEIEAVIRDLRSLLNSSQD
NTTDQMLLNTEMLLKELGTRDNVKVWFYNQAWHGIVSFLNVANNAILRGNLPPGHDPREY
GISSSSHPLNLTKAQLSYQAMAATSTDVVVSICVIFAMSFIPASFVLFLIQERVSKAKHL
QFVSGVNPTVYWVANFAWDICNYIVPCLIVIVIFLCFQQKAYVSLPNLPALILLLLMYGW
SITPMMYPASFIFNVPSTAYVVLTCINLFIGINGSVATFVMELFADDNISKINGIVKQVL
LIFPHFCLGRGLIDMGKNQAMATLYDSFGEDRYQDPLSWDMVGKNLCAMAIQGAVMFTIT
LLIQYKFCCKPRLISGESFSKEDEDVDVARERARIHKGGSEKDLLRICDLSKVYSGKKIP
AVDRVCVGVPAAECFGLWGINGAGKTTTFKMLTGDISISGGEAFLNGYSVRTEMRDVHQN
MGYCPQFDALNDLLTGREHLEFYARLRGVPEKEVPMVAEWGIQKLGLVKYSNKSAGTYSG
GNKRKLSTAMALIGCPPVVFLDEPTTGMDPKARRFLWDCILSVIKEGRSVILTSHSMEEC
EALCTRMAIMVNGQFKCLGSIQHLKSRFGEGYTVIVRVGGSPPALGPVEEFVHESFPGSI
LKEKHHNTLQYQLPHSEGALASIFSHFTTHQQRLGVEDYSVSQTTLDQVFVNFARYQQEE
DNQALQAYDNKVDVSDEMPMETRISTDSTVPESV
NT seq
6765 nt
NT seq
+upstream
nt +downstream
nt
atgggtctcctgacacaactcggtctgctcctgtggaagaacttcactcttcggaagaga
caaaaggtgcgtctggtggtggagctgttgtggcctctctttctgttcttcatcctggtc
tgggtgagatcaaccacccaacccatttaccagggcgaatgtcattatccaaataaagcc
atgccttctgccggggtgctgccttggcttcaaggcatgatgtgtaacatagacaaccca
tgtgtaaaccattccacgccaggagaagcaccgggacaagtcaacaacttcaacaattcc
ataattgctgggatgttgatcgagttacagtcacttctggcgaacagatccgtcttaacc
aagatccagacgctttccgatgatgtggaccagtgggttttgattctaccgacatctaac
cgtgaaaaaggtcagcccattcctctgagaagtatcctgaatgacaatgaaatgttcacc
acatatctgagggaaaacttgtccatgccatcgacggtagccgacggtctgattacctca
aatattcgcctgaatgagatgatgggcatttcaaggcaagacgatctgaggatcaccctt
tgcagtggaacagctcttgatagatacgtagaattcaccagcgcctttgacaaggaggcc
tttcagaaagtcagctgctccctcacagcacagcagttgagacaaactagagaagttttc
ctacaaaacctggatccaaggaaaatgctcaccaatctaccttcagctttggatttggct
ccgtccgagacctttggattagtgagaaaaactacagaggatgccttaaccgtgattgat
gagatgaacaagttgcagaactcaatgttgttcaaggccgctgataggctggatttcaga
gcagatgcatttggcagtctgaacatcctactttgtggtaaagtatcaaactccaactcc
accaagaccaccatgaatttccctgcttttggagcgatgaggaatgacacagaaaacaag
gccaggagcagcaattccagtgccttctgcaaagtactgattgacactcttgagggaact
cctggcctacgtattgtttggaggacatttcggcccctaatccaagggaagatcctctac
acccctgacacacctgcaactagactaatggtgaaagaggcaaatagtactttcaatgca
ttggccatgttgaaagagttgttggatgcttgggaggattttgaaccacgtggttggaac
tactttcaaaatggcccccaagccagtgcactgcgggcctttctggataacccggtattt
gcagccgcactcaaccacgggctcgaaggcacaagatggacggaagagctgctcgccaac
ttcctgtacaacgggccccctgaggaccgccccgcgggcatgccgccgaatgactggcgc
gacatgttcaacgccaccagacaaatcctggacctcctgaagaagttcattgggtgcctg
gacctggataagtttgaggctgttgacagtgagggacatctcgtggctagagccttggag
cttctagaaaacgatacgtactgggctggtatagttttcgaagacctcgaccctgccgcc
agccacccccctccttacgtcaagtacaagatccgcttggacatcgatgagggggagagt
accaataagattaaagaaaggggatggtctcccggggcccgtgactccttcaacaacctg
cgctatatatggggaggcttcgcctatctgcaggacatgatggaccacggcattatacgg
gtgcacacgaacaaatcacagccgctcggcgtgtttgcccagcaaatgccgtatccctgc
tacgtggacgacgtcttcctcgcgagtatcggaaccatgcttcccatgtacctggtgctg
gccttcatgtacaccgtctgcatgaccatcaagggcctcgtcctggagaaggagctcagg
ctcaaggaggttcagcgggccgttggagttcagaatggtgccatttggtttgcgtggttc
accgagaactttgtcctgctcatggtcccatgcgcattcataagtgtcatggttaagtat
gggaaggtgctgcagtacagcgacccctcagtgatcttcgtcttcctgctggtcttctgc
gtggccaccattatggagtgtttcttcatcagcgtcttcttctccaaggccaacctggcg
gcggcgtgcggaggcctcatctacttcgtcctctacctgccgcacctcctctgctatgcc
tggagagacgtcatggggttccaggtcaaaatcgctgtgagtttgctgtcgtgcgtggcc
ttcgggtatggctgtgagaactttgccaagtatgaggagcagggcatcggtattcagtgg
agtaacatcgcccaaaatcctgaagacggagaccggtatagcttcatcgtgtccatcatc
atgatgctagtcgactccctcatctactggctgctcacgtggtacatcgagaacgtcttc
ccaggccaatatggaatagcaaagccatggtacttcccactcaccgcctcctattggtgt
gggacttcaccggcgcccaatgctgaccccagtcagttcaaggaccccattgaatacacc
ggttatttggaaaagccaccactcaatatgaaggcaggggtctcaatcaggaaccttgta
aagatctataaaactgggaaaaagcttgcagtggatggactaactgtggacttcttcgag
aatcacatcacctctttccttggtcacaatggggcaggaaaaacaaccaccatgtcgatc
ctgacaggactcttcgctccgacgtcggggaccgctctaataaacggttatgatatccgc
acagacatggacaccattagaaagcatctgggaatgtgccctcagcacaatgtcttattc
aatgacctcacagtggaggaacacatctacttctactccagattaaagggacgaagccga
gatgaagtgaaaacggagattgaccaaatgatcgaggatgtcgggctgccacacaaacgc
aaggaatttgccaagaacctgtcagggggaatgcagaggaaattgtcggtggcaatcgca
ttcgtgggagggtccaacatcgtcatcctggatgaacccacagcgggggtggacccatac
gcccggagggggatatgggaactactgttgaagtacaaacaaggtcgcacaatcatcctc
tccactcatcacatggatgaggcggacatcttgggagaccgcattgccattatctctcac
ggcaagatgtgttgctatggctcctccctgttcttgaagaaatactttggcagtggctac
tacctcactctggtcaaggccggagacgggcaaatgaccaaccagtgcactggagtcgag
cagcgccaggtgaaagaggagactggtgagtcattgaggagaaccagtctggttgaaggg
atcgcacaacagaactggagtaactctgaacccacagatgtcagtaaggtggtgtgtcgg
catgttcccgaggcggtgttcctcgagagcatcggccaggagatcacctacatccttccc
tatggcggggccaaggatggcacctttgccctcctcttcaaagagctggaccttaagatg
gccgacattggtgtcaccaactacggcatctcagataccacactagaggagattttcctc
aaagtggcagaggacacaggtgttgatgcggaaataccagctatcaacgcagctttggta
agagacaagacaagaagttcaagggaatccaagaggcaacggcaaagcctcaccaaagtt
ggggacacttcagacgaaatgcctgggaaaagtgctgaagacgagatgaaagtgaagttc
actagcagagtggaggatgtggagagagtggccaatgtgaatgggaagggctccagtgtg
atcacgggatgggaactgatccggagacagttcctggccctcttcatcaaacgctttcac
catgcacgcaggagccgcaaaggcctcattgctcaggtgattctgcctgctgtcttcgtc
tgcctgtctctcatcttctccgtcatcgtcccgccttttgcggagtaccccaacctggag
ttgcagccttggatgtatggactgccccaaacgacattctacagcaatgatggaccgcca
aataacacagaggttgctcgggtggcggactctttggtgaataatcctgggtttgggact
cgctgcatggccaacaacccgataccaaatctcccatgtgtcccgaatgattctaagtgg
ttcactcccacagtggatccctctatcagcaacatctttgtcaacggaaactggagcatg
gccaacccttcccctaactgccagtgcagcactcctcaaaagaccaccatgttgccagat
tgcccacctggagccggtgggctgcctccccctcagaggacccagaataccacagacaca
ctgcaggacatgacggggcggaacatgacagacttccttttaaagacctacaaggaagca
ggcagaaaaaggtatggagggatttctgtcggaggggtcaactcccaagtcaggatgact
gaaccggaaatagaagctgtgatcagggatttgaggagcctattaaattcctcgcaggat
aacacaaccgatcagatgctcctgaataccgagatgctcctgaaagagctcgggaccagg
gataatgtcaaggtgtggttctacaaccaggcgtggcacggtattgtatcgttcctcaat
gtggccaacaacgccatcctgaggggcaacctgccgccgggtcatgaccccagggagtat
ggaatctcctcctccagccaccccctcaacctcaccaaggctcagctttcctaccaggca
atggccgccacctccaccgatgtggtggtgtccatctgtgtcatctttgccatgtccttc
atcccagcaagcttcgtcctcttcctcatccaggagcgtgtcagcaaggccaagcacttg
cagtttgtcagtggcgtcaacccgaccgtctactgggtcgccaacttcgcctgggatatt
tgcaactacatagtcccgtgtctaatagtcatcgtcatcttcctgtgtttccaacaaaaa
gcctacgtgtcccttcctaacttaccagctttgattctgctactgctgatgtatgggtgg
tctatcacacccatgatgtacccagcctcgtttatcttcaacgttcccagcacggcctac
gtggtgctgacctgcatcaacctcttcatcggcatcaatgggagcgtggccaccttcgtc
atggagttgttcgctgatgataacatctcgaaaatcaatggtattgtgaagcaggtgctg
ctgatttttccgcacttctgtctgggtcgagggctcatcgacatgggcaagaaccaggcc
atggccaccttgtacgatagctttggggaagaccgttaccaggaccccctcagctgggac
atggtggggaagaacctctgtgccatggccatccagggggcagtcatgttcaccatcact
ctccttatccagtataagttctgctgcaaacccagactgatttctggagagtcattctcc
aaggaggacgaagatgtggacgtggcacgggaacgtgcacgcatccataaaggtggctca
gagaaagacctgttgagaatctgcgatctttctaaggtgtactcggggaagaagattcct
gctgtggacagggtgtgtgtgggcgttccagccgcagagtgctttggactttgggggatt
aacggggcaggaaaaaccaccaccttcaagatgctgacgggggacatctccatctccgga
ggggaggccttcctaaacggatacagcgtacggacagagatgagggacgttcaccagaac
atgggctactgcccgcagtttgacgccctcaacgaccttctcaccggacgagagcacctg
gagttctacgccagactacgaggcgtaccggagaaagaagtccccatggtggcagagtgg
ggcatccagaagctaggcctggtcaaatactccaacaagtcagccggtacctacagtgga
gggaacaaacgcaagctctccaccgccatggctttgattggctgtcctcctgtggtcttc
ctggatgagccaacaacagggatggaccccaaagccagacgcttcctgtgggactgcatc
ctgagtgtcatcaaagagggacgctcagtcatcctaacatcacacagcatggaggagtgt
gaggccctatgcacgcgcatggccatcatggtgaatggacagttcaagtgtctgggcagc
atccagcatcttaagagcaggttcggagaaggctacactgtgatcgtgagggtgggcggc
tcgccccccgccctgggccccgtggaggagtttgtccacgagtccttccccggtagcata
ttgaaggagaagcaccacaacacgctgcagtaccagctcccccacagcgagggcgctctg
gccagcatcttcagccatttcaccactcatcagcagaggctgggtgtggaggactactct
gtctcccagaccactctggatcaggtctttgtcaactttgcgaggtaccaacaggaggag
gacaatcaggccctgcaagcttatgacaacaaagtggacgtgtctgacgaaatgccaatg
gaaactcggatctcaaccgactcaactgtaccagagagcgtctga
DBGET
integrated database retrieval system
