Oncorhynchus tshawytscha (Chinook salmon): 112259969
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Entry
112259969 CDS
T05605
Name
(RefSeq) multiple PDZ domain protein isoform X3
KO
K06095
multiple PDZ domain protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
112259969
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
L27_2
MPDZ_u10
L27_1
Motif
Other DBs
NCBI-GeneID:
112259969
NCBI-ProteinID:
XP_024290458
LinkDB
All DBs
Position
LG10:23206922..23281453
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AA seq
2053 aa
AA seq
DB search
MIETMDTQRALQAVERLQAKLKDRGEVPTEEKLSLLKSVLQSPLFHQILALQKSVQLLKD
QGGVTSSLSDDLSECYTSAQANGGHLAYPEASTSTQVNGKQSPEEFEHIIRSMAQGRYVT
HMELVKPLSGGLGFSVVGLRSENRGELGIFVQEIQPGSVAHCDGKLKESDQILAINGQPL
DQTVTHQQAIGILQRASECVQLTIARGPIPQLASPVVSRTPSAASTLSAHSSAAHWNHVE
TMELVNDGTGLGFGIVGGKTTGVIVKTILPGGIADQDGHLRSGDHILKIGDTDLYGMGSE
QVAKVLRQCGNRVKLVITRGPPEETAIVPMVLPTVTEQQGYEEEEAEAFDVGLTKNAQGL
GITIAGYVGDKHSEPSGIFVKSITKDSAVEQDGRIHVGDQIIAVDGNNIQGYTNQQAVEV
LRHTSQTVHLKLIRRGFRPEDIPPAVVPSVIVVSPTPGGRDTTLEKTDVVDATTQGKKQY
QALSEESDVTNVKDQLTEKTRDEAKLTEDEEIELKKKWQETLGPSKEVVVAQVEKFSESS
GLGISLDANSGHHYIRSVLPEGPVGRCGKLFSGDELLEVNGISLIGETHKEVVSILKELP
VCVYMTCCRPAPLLKSDRDSGQPGLDEFATEPIMKIQGDLGSFLVFEGSEGVATRENVTD
ETLGAPLAMWETEIQDIELEKGESGLGFSILDYQDPMDPAKTVIVIRSLVSEGVAEQDGR
LLPGDRLMFVNSTNLDNASLEDAVQALKGANIGTVHIGVAKPLPIDSNEVDLTDERVLAH
RFSGEEDDTFQASMIALHGSTCSADLSYQMIFQSSTPKRNARLDLLTEHPFVTLSCLADD
TEPFSPEEKHIAFPLPRSIGSHTLMIDNNTLAISDQYLAHQLTQLEPSDLSNSCSPYTDP
EPGLNDLGEPMQSLRFPVEPTMVVADIGEMECLMKGDEPSVKQSKEEGEIRTTGSNFERT
ITVVKGNSSLGMTVSAVKDGLGMHIRSIIHGGSISRDGRLGVGDLILAINGEPTANLTNT
QARAMLRRHSLIGPDMGSACAPEDDLCPFYVITYVPMEYLEEYKASLEQPKDDIFSDAPQ
APKREIPELPEREEGEGEESELQSATFSNWNQPRKVELKKEAGKSLGISIVGGRGMGSRL
SNGEVMRGIFIKHILEDSPAGRDGTLKTGDRVVEVDGVDLRDASHEQAVEAIRRAGNPVV
FLVQSIVHRPRSSTTDTNEERAVAMARRNSDKEVESHSRLFLRLSPTNPFTPTPFKPLKR
EAGKSSSTTPHLSLPVVPHVGETDTDTLTEIPDRQAQAEDEDEFGYSWKSIIQRYGSLPG
LLHMIELEKGKTGLGLSLAGNRDRSRLSVFVVGIDPCGAAVKDGRIVVGDELLEINGQIL
YGRSHQNASSIIKSAPSKVKIIFIRNTDALNQMAVGPVREHGDTLEPQTELETCTSIAPS
AIDVDMFKYVQHVILPKEEGGFGITFSEEDPTNGVVIQSITEKGPAGKDGSIKSGDKLLA
VEDEPVVGYTVERVHSLLGNAKGSVKLTICANESLPLPPFYTDQATSIPSIYMANLGQPE
SEPIRSSSRSSTPGTLASSDPVTCPIIPGCETTIDISKGHTGLGLSIVGGCDTLLGTIII
HEVYEEGAASKDGRLWAGDQILEVNGIDLRVATHDEAINVLRQTPQRVRLSVFRDEAQYK
EEDLWDAFTVELNKKPGQGLGLSIVGRRKRKRKPSRTGTELKSLSGNWNDTGVFVSDIVK
GGVVESDGRLMQGDQILSVNKEDVRNATQESVAALLKCGVGPIVMEVGRFKAGPFHSERR
FSQSSQISETGSCKVTPHSLSASSGSLQMDCDSVQHTTLDHQEIRIVEFTKGFTDSLGIS
IAGGVGSPLGDVPIFIAMMNPTGLAAQTHKLKIGDMIVSICGTATEGMSHSQAVTLLKNA
TGTIELQVVAGRDTTVTGPSQEQTAAGLSVSSLTATSIFHDDLGPPQYKTITLARGPDGL
GFSIVGGFGSPHGDLPIYVKTVFGKGAASEDGRLKRGDQIMAVNGQSLEGVTHEEAVGIL
KRTKGTIALTVLS
NT seq
6162 nt
NT seq
+upstream
nt +downstream
nt
atgattgagacaatggatacccagcgtgccttgcaggcagtggagcgtctccaggccaag
ctgaaggaccggggggaggtccccaccgaggagaagctcagcctgctcaagtcagttctc
cagagccccctgttccaccagattcttgccctgcagaagtctgtccagctcctcaaagac
cagggtggtgtcacatcatcacttagcgatgacctgagtgaatgctacacatcagcccag
gccaatggtggccatcttgcctacccagaagcctccactagtacacaggtcaatgggaag
caatcgcctgaggaatttgagcacatcattcgctccatggctcaggggcgctacgtgacg
cacatggagctggtgaagccactgtctgggggtctgggcttcagcgtggttggcctgagg
agcgagaaccgcggggagctgggcatcttcgtccaggagatccagcccgggagcgtggcc
cactgcgatgggaagctgaaggagtcagaccagatcttggccatcaacggtcaacccctg
gaccagacagtgacccaccagcaggccataggcatcctgcagagagcatctgagtgcgtg
cagctcactatagccagaggacccattcctcagctggccagcccagtggtgtcccgtacc
ccctccgctgccagcaccctgtctgcccactccagtgcggcccactggaatcatgtggag
accatggagctggtcaacgacgggacaggcctgggctttggcattgtgggaggaaagacc
accggtgtcattgtcaaaaccatcctgcctggaggcatcgctgatcaggatgggcatctg
cgcagtggggaccacatcctcaagattggggacactgacctatatggcatgggaagtgag
caggtggctaaggtcctgaggcagtgtggtaaccgagtgaagttggtcatcaccagaggc
cctccagaggagaccgccatcgtcccaatggtgttgcccacggtcacagagcaacaggga
tacgaggaagaggaggccgaagcgtttgacgttgggctgaccaagaacgcccagggtctg
ggaatcaccatcgccggctatgtgggggacaaacattctgagccctctggtattttcgtg
aaaagtataactaaagacagtgcggtagagcaagacggccggatccatgttggggaccag
atcatagccgtggacggtaataacatccagggatacaccaaccagcaggccgtggaggtg
ctgagacacacgagccagacagttcacctgaagctgatcaggcgaggcttccgtccagag
gatatcccacccgctgtggtgcccagtgtgatcgtagtctcaccaaccccagggggcaga
gacacgacactggagaagacggatgttgtggacgccaccactcaaggtaagaaacagtac
caggcattgagtgaggaatctgatgtcaccaacgtgaaggatcagttaactgagaagacc
agagacgaagcaaagctaacagaggatgaggagatagagctgaagaagaagtggcaggag
actctcggccccagcaaggaagtagtggttgcccaagtggagaagttcagtgagagcagt
ggtctgggaatcagtctggatgccaacagcgggcaccactacatccgctccgtcctgccg
gaggggccagtgggacgctgtgggaaactcttcagtggggacgaactgctcgaagttaat
ggaatatccctgattggtgagacccacaaggaagtggtgagcattctgaaggagctgcct
gtctgtgtctacatgacttgctgtaggcccgcccctctcctgaagagtgacagggattct
ggccaaccggggttggatgaatttgctactgaacctataatgaagatacagggagacctc
ggcagtttcctggttttcgaaggttccgagggggtggcgacgagggaaaatgtaacagat
gagacactcggagctcctttggccatgtgggagacggagatacaggacattgagctggag
aagggtgagagcggactgggattcagcatcttggactaccaggacccaatggatcctgcc
aagacggtgattgtgattcgctctctggtgtctgaaggagtggcagaacaggatggcagg
ctattgccaggtgaccggctcatgttcgtcaacagcaccaacctggacaacgccagtctg
gaggacgctgtccaggcattgaagggggctaacatcggcacggtccacattggggtggcc
aaaccactacctattgactccaatgaggtagacctgaccgacgagagggtgttggcgcat
cgcttctctggcgaggaggatgacaccttccaggcatccatgattgccctccatggcagc
acctgcagcgctgacctgtcctaccagatgatctttcagtcctccacacccaagcggaat
gctcgtctggacttgttgaccgaacatcccttcgtgacgttgtcctgcctcgcagacgac
actgaacccttttccccggaggagaagcacatcgctttccccctgcccaggagtattgga
agtcacaccctaatgattgacaacaacacactagctatctccgatcagtacctggcgcat
caattaacccaattggagccgtcagatctgtcgaactcgtgcagtccgtacactgacccc
gagcccggtttgaatgatttgggggagccaatgcagtctcttcgttttccggtggagccc
accatggtcgttgcagacataggggagatggaatgcttaatgaagggggatgagccatct
gtaaagcagtccaaagaggaaggggagattagaaccactgggagtaattttgaaaggaca
atcactgttgtcaagggcaactccagtctcggaatgacggtgagcgccgtcaaggatggc
ttggggatgcacatccgcagcatcatccacggaggctccatcagccgagacggccgtctg
ggggtgggcgacctcatcctggccatcaacggcgagcccacggccaacctgaccaataca
caggcccgcgccatgctccggagacactccctcatcgggccagacatgggatctgcttgt
gcaccagaggacgatctgtgccccttttatgtcatcacctatgttcccatggagtatctg
gaggagtacaaggccagcctggagcagcctaaagatgacatcttctctgatgctcctcag
gccccaaaaagagaaatcccagaactcccagagagggaggaaggagagggagaggagagc
gagctacagagtgccaccttcagtaactggaaccagcccaggaaggtggagctcaaaaaa
gaagctggcaagtcccttggcatcagcattgtggggggcagaggaatgggcagtcgcctc
agcaacggcgaggtgatgcggggcatcttcatcaaacacatcctggaggacagccccgcc
ggccgggacgggaccctgaagacaggagacagggttgttgaggtggatggcgtggacttg
agagatgccagtcacgagcaggctgtggaggccatccgcagggcaggaaaccctgtcgtg
ttcctcgtgcagagtatcgtccacaggcccaggtcctcaaccacggacaccaacgaggag
agggcggtggccatggcacggcgcaatagtgacaaggaggttgagagtcacagtagacta
ttcctacgcctctccccaactaaccctttcactcctactccgtttaagccactaaagagg
gaagcgggaaagtcatcgtccaccactcctcacctctcgcttcccgtggttccccacgtc
ggagagacagacaccgataccctgacagagattcccgacagacaggcccaggcggaagac
gaggatgagtttggctacagctggaagagcatcattcagcgctacggcagccttccgggg
ctgctgcacatgattgagctggagaaggggaagaccggcctgggccttagtctggctggc
aaccgcgaccgctctcgcctgagcgtgtttgtggtcgggatcgacccctgtggcgccgcc
gtcaaagatggtcgcattgtggttggggatgaactgttggagatcaacgggcagattctg
tatgggcggagtcaccagaatgcctcctccatcatcaaaagcgctccgtcaaaggtcaag
atcattttcatcaggaacacagatgctctgaaccagatggctgtaggaccagtgagggaa
catggagataccctggagccccagacggagctggaaacatgtacttccattgcaccctcg
gcgatcgatgtcgacatgttcaagtatgtgcagcacgtcattctgccgaaggaggagggt
ggattcggcatcactttcagtgaggaagaccccacgaacggggtggtgattcagagtata
actgaaaaaggaccagcgggaaaggacggcagcatcaaatctggagataaactcctggct
gtggaggatgaaccagtggtgggctacactgtggagagggtccactctctactggggaac
gccaaaggctccgtgaagttgacaatctgcgcgaatgagtcattgcccctcccccccttc
tatactgatcaggccaccagcatccctagcatctacatggctaacctgggccagcctgag
tcagagccaatcaggagctcaagtcgctcgtccacccctggtactctggcctcctctgac
cctgtgacctgtcccatcatccccggctgtgagaccaccatagacatctccaaaggccac
acgggcctgggcctcagcatcgtggggggctgtgacactctattggggaccatcatcatt
cacgaggtctatgaggagggagctgcctccaaggatgggagactttgggctggggaccag
atcctggaggtgaatggcattgacctgcgcgtggccactcatgacgaagctatcaacgtg
ctacggcagacccctcagcgggtgcgtctgagcgtgttcagggatgaggcccagtacaag
gaggaggacctgtgggatgcctttaccgtggagctgaacaagaagcccggccagggcctg
ggcctcagcatcgtggggagaaggaaacgaaaaaggaaaccttctagaaccggtaccgaa
ttgaagagtctgagcgggaactggaacgacacaggggtgtttgtgtcggacatagtgaaa
gggggcgtggtggagagtgacgggaggctgatgcagggagaccagatcctgtccgtcaac
aaggaggatgtcagaaacgccacccaggagtcagtggctgcactgctgaagtgtggtgtg
ggacccatagtgatggaggtgggcagatttaaagccggaccctttcactctgagagaagg
ttctcacagagcagtcagataagtgaaacgggcagctgcaaggtgacccctcactcgctg
tcagcctcctctggtagcctccagatggactgtgacagcgtacaacatacaacactggac
caccaggagatcagaattgttgaattcacaaagggtttcactgattcattgggcatcagt
attgcgggtggagtgggcagtcccctgggcgatgtgcccatcttcatcgccatgatgaac
cctaccggcctcgctgcccagacacacaaactcaagatcggtgacatgatcgtcagtatc
tgtgggaccgctactgagggtatgagccacagccaggccgtcaccctgctgaagaatgcc
accggcaccatcgaactgcaggtggtagcagggcgtgataccacagtgaccggcccgtct
caggagcagacagctgccggactctcagtctccagccttactgctactagcatcttccac
gacgacctgggacctcctcaatataagaccattaccctggccaggggcccagatggcctg
ggcttcagcattgttggtggctttggaagcccacatggagacctgcccatttatgtgaaa
accgtgtttgggaagggggcagcgtcagaggacgggcgtctgaagcggggggatcagatt
atggctgttaacggacagagtctggagggggtcacccacgaggaggctgtgggcatcctg
aagaggaccaagggaacaattgccctcactgtgctctcctag
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